Ulrich Hennecke’s research while affiliated with Vrije Universiteit Brussel and other places

What is this page?


This page lists works of an author who doesn't have a ResearchGate profile or hasn't added the works to their profile yet. It is automatically generated from public (personal) data to further our legitimate goal of comprehensive and accurate scientific recordkeeping. If you are this author and want this page removed, please let us know.

Publications (76)


A comparative study between phenylglycine and phenylalanine derived peptide hydrogels: Towards atomic elucidation
  • Article

March 2025

·

26 Reads

Materials Today Chemistry

·

·

·

[...]

·




Genotypic indication for PHA production in P. kondratievae. (A) Schematic representation of the genetic organization of PHA‐related genes in P. kondratievae BJQ0001, including gene numbers and amino acid sequence identities with homologues in P. denitrificans PD1222. Below, gene syntenies of the corresponding PHA gene clusters in selected Paracococcus strains are schematically represented, based on an analysis in SyntTax (Oberto, 2013). (B) In silico analysis of the transcriptional structure of the PHA gene clusters in P. kondratievae. Nucleotide sequences of intergenic regions are depicted, with indication of translational start and stop codons (boxed in purple), putative −10 and −35 promoter elements (boxed in green) and putative transcription start sites (TSSs) (region boxed in green, TSS indicated with a red arrow). Coding regions are shaded in grey, while the length of the intergenic region is mentioned. For the phaP‐phaR intergenic region, only the part immediately upstream of phaR is shown, while the length of the total intergenic region is mentioned. The BPROM algorithm was used for predicting −10 and −35 boxes, with the prediction scores mentioned below the boxes in italics. TSSs were predicted manually based on their spacing with the −10 box.
Chemical and thermal analysis of PHA extracted from P. kondratievae. (A) Nile Red stained cells of P. kondratievae NCIMB13773 cells visualized with fluorescence microscopy. (B) FTIR spectrum of the extracted PHA sample as compared to that of commercial PHBV as a reference. Characteristic PHA peaks are indicated by their respective wavenumber. (C) GC–MS analysis of the extracted polymer. Top: GC chromatogram of the extracted PHA sample. The x‐axis represents the retention time and the y‐axis depicts a quantitative presentation of the number of molecules with the same retention time. The peak with a retention time of 6.200 min, indicated in purple letter type, is hypothesized to be PHB as this is the characteristic retention time. Bottom: MS spectrum of the main peak with retention time 6.2 min; x‐axis: relative mass of the charged cation compound (m/z); y‐axis: relative intensity of the occurrence of cations formed during fragmentation at the start of MS. At the top‐right corner, a 3‐(trimethylsilyl)‐methyl ester derived of a 3HB monomer is displayed. The most important peaks on the graph are indicated with a letter that correspond to a specific fragment of the 3‐(trimethylsilyl)‐methyl ester.
Temperature and time dependence of growth and PHB production in P. kondratievae and P. denitrificans. (A) FL/OD values, OD600 values and growth rates were determined for flask cultures of P. kondratievae NCIMB13773 and P. denitrificans DSM413. (A) Fluorescence and OD600 values were measured at time points 10 h (corresponding to exponential growth phase) and 24 h (corresponding to stationary growth phase). Growth rates were calculated for the growth curve segments representing exponential growth. (B) FL/OD and OD600 values measured for P. denitrificans and P. kondratievae flask cultures during stationary growth phase at specified time points. Cultivation was performed at 42°C for P. kondratievae NCIMB13773 and at 30°C for P. denitrificans DSM413. Statistical significance was calculated using a paired t‐test (*p < 0.05; **p < 0.01; ***p < 0.001).
Effect of C/N ratio on PHB production by P. kondratievae NCIMB13773. Cultivation was performed in MSM with glycerol (A), sodium gluconate (B) or glucose (C) as a sole carbon source and cells were harvested after 24 h of growth. Corresponding data are presented in Table S1 and results of statistical tests in Supplementary Dataset S2.
Effect of NaCl concentration on growth and PHA accumulation. This experiment was performed for (A) P. kondratievae cultivated in TSB medium and (B) P. denitrificans cultivated in LB medium. Samples were analysed after 72 h. A statistical analysis could not be performed for these data because duplicate measurements were performed. (C) Bottom‐view picture taken of cultures of P. kondratievae cultivated on TSB medium (left) and TSB + 5% NaCl (5%), with indication of cell aggregates for the latter.
Paracoccus kondratievae produces poly(3‐hydroxybutyrate) under elevated temperature conditions
  • Article
  • Full-text available

June 2024

·

55 Reads

As part of ongoing efforts to discover novel polyhydroxyalkanoate‐producing bacterial species, we embarked on characterizing the thermotolerant species, Paracoccus kondratievae, for biopolymer synthesis. Using traditional chemical and thermal characterization techniques, we found that P. kondratievae accumulates poly(3‐hydroxybutyrate) (PHB), reaching up to 46.8% of the cell's dry weight after a 24‐h incubation at 42°C. Although P. kondratievae is phylogenetically related to the prototypical polyhydroxyalkanoate producer, Paracoccus denitrificans, we observed significant differences in the PHB production dynamics between these two Paracoccus species. Notably, P. kondratievae can grow and produce PHB at elevated temperatures ranging from 42 to 47°C. Furthermore, P. kondratievae reaches its peak PHB content during the early stationary growth phase, specifically after 24 h of growth in a flask culture. This is then followed by a decline in the later stages of the stationary growth phase. The depolymerization observed in this growth phase is facilitated by the abundant presence of the PhaZ depolymerase enzyme associated with PHB granules. We observed the highest PHB levels when the cells were cultivated in a medium with glycerol as the sole carbon source and a carbon‐to‐nitrogen ratio of 10. Finally, we found that PHB production is induced as an osmotic stress response, similar to other polyhydroxyalkanoate‐producing species.

Download


Fast Self‐Assembly Dynamics of a β‐Sheet Peptide Soft Material

February 2023

·

97 Reads

·

15 Citations

Peptide‐based hydrogels are promising biocompatible materials for wound healing, drug delivery, and tissue engineering applications. The physical properties of these nanostructured materials depend strongly on the morphology of the gel network. However, the self‐assembly mechanism of the peptides that leads to a distinct network morphology is still a subject of ongoing debate, since complete assembly pathways have not yet been resolved. To unravel the dynamics of the hierarchical self‐assembly process of the model β‐sheet forming peptide KFE8 (Ac‐FKFEFKFE‐NH2), high‐speed atomic force microscopy (HS‐AFM) in liquid is used. It is demonstrated that a fast‐growing network, based on small fibrillar aggregates, is formed at a solid–liquid interface, while in bulk solution, a distinct, more prolonged nanotube network emerges from intermediate helical ribbons. Moreover, the transformation between these morphologies has been visualized. It is expected that this new in situ and in real‐time methodology will set the path for the in‐depth unravelling of the dynamics of other peptide‐based self‐assembled soft materials, as well as gaining advanced insights into the formation of fibers involved in protein misfolding diseases.





Brønsted Acid‐Catalyzed Enantioselective Iodocycloetherification Enabled by Triphenylphosphine Selenide Cocatalysis

June 2021

·

30 Reads

·

10 Citations

Enantioselective iodocycloetherifications can be conducted using sterically highly demanding BINOL‐based phosphoric acid diesters as catalyst. To achieve highly enantioselective reactions, cocatalysis by triphenylphosphine selenide is necessary. With cocatalysis, good to excellent enantioselectivities can be achieved for a broad range of substrates using catalyst and cocatalyst loadings as low as 1 mol %. The triphenylphosphine selenide cocatalyst itself does not strongly influence diastereoselectivity, but leads to higher reactivity and, in combination with a BINOL‐based phosphoric acid diester, to good enantioselectivity. magnified image


Citations (49)


... 201,202 Later, Ye and Zhu 203 investigated the intermolecular hydroamination of N-tosylated 5-amino-1pentene by employing a cobalt catalyst, to produce N-tosylated 2-methylpyrrolidine derivatives. Recently, Hennecke and coworkers 204 reported the hydroamination of N-Nosyl 5-amino-1pentene. Hultzsch et al. 205 synthesized chiral rare-earth-metal Please do not adjust margins Please do not adjust margins (yttrium and lanthanide) complexes containing biphenolate and binaphtholate amido complexes, which were utilized for the hydroamination/cyclization of 5-amino-1-pentene. ...

Reference:

’Green’ synthesis of amines from renewable resources? A detailed analysis of case studies using the CHEM21 Green Metrics Toolkit
Enantioselective, Bro̷nsted Acid-Catalyzed Anti-selective Hydroamination of Alkenes
  • Citing Article
  • June 2024

Journal of the American Chemical Society

... Boc and Fmoc are the most common protecting groups used and are removed under acidic and basic conditions respectively [174]. Various resins have been used in SPPS, for example: polystyrene, Merrifield, hydroxymethyl, phenylacetamidomethyl, Wang, Sieber, Rink amide and 4methylbenzhydrylamine resins [174,175]. SPPS based on Fmoc chemistry is the most popular choice of synthesizing peptides nowadays [174]. Since the invention of solid phase synthetic methods by Merrifield in 1963, the number of research focusing on peptide synthesis and their applicability has grown exponentially, finally enabling the routine production of peptides on industrial scale [174,175]. ...

Fast Self‐Assembly Dynamics of a β‐Sheet Peptide Soft Material

... Out of these, lactones are crucial synthetic intermediates in the synthesis of many biologically active natural products. [14][15][16][17] Given the high importance of lactones, numerous methodologies were developed, [18][19][20][21] and amongst them, halolactonization [22][23][24][25][26][27] is widely used to synthesize many natural and biologically active compounds. Due to its high synthetic utility and poor atom economy, there is a great demand for alternative methods, which are mild, efficient, and more atom economical. ...

A dynamic picture of the halolactonization reaction through a combination of: Ab initio metadynamics and experimental investigations

... The cyclic dipeptides cyclo (L-phenylalanine-Lproline (2) was derived from the ethyl acetate fraction of endophytic fungus Marchantia polymorpha as major volatile chemical compound, showed cytotoxic and anticancer activity [20]. Previously, Silva et al. [21] synthesized quinoline and its derivatives, moreover quinolone derivatives isolated from pathogen microorganism P. aeruginosa [22]. In our preset work we obtained metabolite 1-methylquinolin-4(1h)-one (3) ethyl acetate extract of most active endophtytic bacteria B. halotolerans XJB-35 for first time. ...

Modification of the Pseudomonas aeruginosa toxin 2‐heptyl‐1‐hydroxyquinolin‐4(1H)‐one and other secondary metabolites by methyltransferases from mycobacteria

... This innate stereochemical characteristic is highly reliable and thus indispensable for the stereoselective synthesis of organohalides [3][4][5][6][7][8][9][10][11] . Furthermore, the recent advancements in this field have even reached a remarkably sophisticated level of enantioselectivity control [12][13][14][15][16][17][18][19][20][21][22][23] . On the other hand, the alteration of the diastereochemical course turns out to be more challenging, and only limited examples can be found in the old chemical literature (Fig. 1b) [24][25][26] . ...

Enantioselective Dihalogenation of Alkenes

... 1.13.11.47) from Pseudomonas putida (Qi et al., 2007) and 2-heptyl-3-hydroxy-4(1H)-quinolone dioxygenase (AqdC) from Mycobacteroides abscessus (Wullich et al., 2019) have been structurally characterized. Although HOD and QDO only share 37 % identity, both act on similar substrates, mainly the name-giving 1H-3-hydroxy-4-oxoquinaldine (Scheme 17) (Steiner et al., 2007). ...

Structural basis for recognition and ring-cleavage of the Pseudomonas quinolone signal (PQS) by AqdC, a mycobacterial dioxygenase of the α/β-hydrolase fold family
  • Citing Article
  • June 2019

Journal of Structural Biology

... The chlorinated TPs formed from QSMs very likely lead to reduced QS activity (Syrpas et al., 2014b), reduced bacterial growth (Ritzmann et al., 2019) or/and are potentially harmful (Richardson et al., 2007). For the halogenation of 3-Oxo-C n -AHL, reduced QS activity was observed in Escherichia coli JB523 bioassays (Syrpas et al., 2014b) and a loss of the total QS activity for the final cleavage of the halogenated N-acyl chain was reported (Syrpas et al., 2014a). ...

Bromination of alkyl quinolones by Microbulbifer sp. HZ11, a marine Gammaproteobacterium, modulates their antibacterial activity
  • Citing Article
  • May 2019

Environmental Microbiology

... Later in 2019, the Hennecke group reported an asymmetric dichlorination of unfunctionalized alkenes using C10a as catalyst (Scheme 10). [31] In the following year Yeung group. reported a novel amino-acid-derived phthalazine reagent C10b for the enantioselective fluorocyclizations of prochiral indoles. ...

Organocatalytic, Enantioselective Dichlorination of Unfunctionalized Alkenes

... This innate stereochemical characteristic is highly reliable and thus indispensable for the stereoselective synthesis of organohalides [3][4][5][6][7][8][9][10][11] . Furthermore, the recent advancements in this field have even reached a remarkably sophisticated level of enantioselectivity control [12][13][14][15][16][17][18][19][20][21][22][23] . On the other hand, the alteration of the diastereochemical course turns out to be more challenging, and only limited examples can be found in the old chemical literature (Fig. 1b) [24][25][26] . ...

Organocatalytic, Enantioselective Dichlorination of Unfunctionalized Alkenes
  • Citing Article
  • April 2019

Angewandte Chemie

... In addition, adamantylidene-adamantane (8) did not retard the reaction (Table 1, entry 9), which is consistent with the fact that the isolated bromiranium ion of 8 was used as a reactive brominating agents. [18] Moreover, as expected in Scheme 2b, trans-cycloocten-5-ol (9) did not possess inhibitory effects (Table 1, entry 10), indicating the negative influence of the generation of HBr. Indeed, the addition of pyridine hydrobromide significantly accelerated the reaction in the presence of 1 a (Table 1, entries 2 and 11). ...

Stable Bromiranium Ion Salts as Reagents for Biomimetic Indole Terpenoid Cyclizations
  • Citing Article
  • March 2019

Organic Letters