Toshifumi Igarashi’s research while affiliated with Hokkaido University and other places

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Publications (132)


Hydrogeochemical Characteristics of an Abandoned Copper Mine Tailings Storage Facility Producing Circumneutral Seepage Waters产生近中性渗出水的废弃铜矿尾矿储存场的地球化学特征Características hidrogeoquímicas del drenaje circumneutral procedente de una balsa de estériles de una mina de cobreHydrogeochemische Merkmale circumneutraler Sickerwässer der Spülhalde einer stillgelegten Kupfermine
  • Article

March 2025

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17 Reads

International Journal of Mine Water

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Kenani Malama

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Toshifumi Igarashi

This study investigated the hydrogeochemical characteristics of a tailings storage facility (TSF) from an abandoned copper (Cu) mine, where circumneutral drainage is observed. Surface drainage streams of the tailings, tailings pore water, and seepage were analyzed to determine the TSF water chemistry. The mineralogy and chemical composition of the tailings were characterized using X-ray diffraction (XRD) and X-ray fluorescence (XRF). The tailings contain elevated Cu, up to 2530 mg/kg, and zinc (Zn), up to 2390 mg/kg. However, Cu and Zn were not leachable from the tailings bored cores and remained undetected in the tailings pore water. Mineralogical analysis of the bored cores identified pyrite, calcite, chlorite, and goethite, while pore water revealed elevated concentrations of calcium (Ca), up to 485 mg/L and sulfate (SO42−), up to 1720 mg/L. Thermodynamic modeling suggests pyrite oxidation and calcite dissolution are controlling the Ca–SO42− dominated water chemistry, maintaining a circumneutral pH ranging from 6.1 to 7.3. These conditions promote the precipitation of ferrihydrite and goethite, which may sequester the potentially toxic elements in the pore water. Sequential extraction confirmed the limited mobility of Cu and iron (Fe), which were strongly partitioned in the oxidizable and residual phases. Although acid–base accounting (ABA) indicates that the tailings remain susceptible to acid generation, the findings suggest the historical use of artificial neutralizing agents containing calcite during tailings disposal. This is derived from the correlation between the mineralogical compositions in the bored cores and the solubility controlling phases in the tailings water. Subsequently, the tailings indicate neutral drainage, leading to decreased potentially toxic element mobility; the predicted lifespan of the inorganic carbon in the calcite is estimated to last several hundred years before depletion.



Figure 8. Eh-pH predominance diagram of (a) As, (b) Fe, (c) Fe suppressed hematite and goethite to show the stability of magnetite, and (d) Fe(OH) 3 suppressed hematite, goethite, and magnetite to show the stability of Fe(OH) 3 at 25 • C, 1.013 bars. Plots represent the actual Eh and pH measured during the column experiment in Case 3. No. 1 to No. 66 in the legends refer to the number of times leachate was collected in Case 3.
Utilization of the Finer Particle Fraction of Arsenic-Bearing Excavated Rock Mixed with Iron-Based Adsorbent as Sorption Layer
  • Article
  • Full-text available

February 2025

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26 Reads

Excavated rocks generated during tunnel construction may pose an environmental hazard due to the release of acidic leachate containing potentially toxic elements (PTEs). Addressing this concern requires strategic countermeasures against mitigating the release of PTEs. This study investigated the efficacy of a novel approach for managing altered excavated rocks that generate acidic leachates with elevated arsenic (As) by utilizing the finer altered rock as a base material for the sorption layer. The proposed method involves classifying the altered excavated rocks into coarse (9.5–37.5 mm) and finer (<9.5 mm) fractions, with the finer fractions incorporated with iron (Fe)-based adsorbent to form a bottom sorption layer for the disposal of coarser rock samples. Leaching behavior and As immobilization efficiency were assessed through shaking, stirring leaching tests, batch sorption tests, and column tests under varying particle size fractions of the rock samples. Results indicate that altered finer rock fractions exhibit increased As leaching under shaking conditions due to enhanced dissolution. The addition of >1% of Fe-based adsorbent to the finer rock in the sorption layer effectively suppressed As leaching concentration, meeting the management criterion of <0.3 mg/L for specially controlled contaminated soils in Japan. Batch sorption tests using the finer rock samples with the Fe-based adsorbent confirmed their efficacy as effective adsorbents. This efficacy was further elucidated in column experiments consisting of the coarse rock samples and fine altered rock samples mixed with the Fe based adsorbent at the bottom as a sorption layer. Results showed that the sorption layer effectively decreased the As leached from the rock layer, utilizing the altered excavated fine rock as a base material in the sorption layer. This approach highlights the potential for repurposing excavated rocks as sorption media, enabling sustainable management strategies for As-contaminated rocks. This study provides an innovative framework for integrating adsorption-based remediation, contributing to sustainable countermeasure strategies for excavated rocks.

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Impact of effluents from a closed mine on the surrounding water resources: Groundwater contamination of the historical abandoned mine site in Japan

December 2024

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101 Reads

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1 Citation

The extraction of mineral deposits is often associated with the occurrence of acid mine drainage (AMD), which can persist even after mine closure due to remaining sulfide minerals. This study investigates a 200-year-old abandoned mine and its impacts on nearby water resources. The study area is well known for Kuroko ore deposits located upstream of spring and river water resources. To elucidate the impacts of the abandoned mine site, mine water and spring and river water samples were collected, and their geochemical properties were monitored between 2021 and 2022. Groundwater, seepage, and surface water at the mine site showed AMD characteristics with Ca²⁺–SO4²⁻/Mg²⁺–SO4²⁻ type. AMD-affected mine water showed a low pH range of 3.40–4.84, with elevated SO4²⁻ of up to 326 mg/L. At the downstream of the mine site, one of the groundwater samples showed pH of 3.55 and average concentrations of 5.03 mg/L of Al, 2.06 mg/L of Cu, 2.06 mg/L of Fe, 0.42 mg/L of Pb, and 8.04 mg/L of Zn, inferring the contaminant transport. Saturation indices of the mine water also indicated that the solubility controlling phases, anglesite, gibbsite, ferrihydrite, and jarosite influence the concentrations of Al, Fe, and Pb at the mine site. Meanwhile, spring and river water samples showed Ca²⁺–HCO3⁻, Ca²⁺–SO4²⁻, and Na⁺–K⁺–HCO3⁻ type with a circumneutral pH range of 5.59–8.02 and they were unaffected by AMD. The principal component analysis (PCA) of the spring and river water samples also showed higher loadings for Ca, Mg, NO3⁻, and Cl⁻ reflecting the abundance of carbonate and evaporite minerals while the mine water and groundwater downstream showed higher loadings of Cl⁻, Fe, SO4²⁻, and Zn. The results suggest that the past mining activities only influenced the mine site and groundwater downstream. Consequently, the fate and migration of contaminants in the downstream of the mine site should be evaluated in the near future. Graphical Abstract


Phylogenomic tree of Thiomicrospira sp. strain V2501 (marked with an asterisk) and related strains was obtained using the Type (Strain) Genome Server platform (https://tygs.dsmz.de/) (13). The tree was inferred with FastME 2.1.6.1 (16) using GBDP (Genome Blast Distance Phylogeny) distances calculated from genome sequences. The accession numbers of the genome sequences are shown in parentheses.
Complete genome sequence of Thiomicrospira sp. strain V2501 isolated from 250 m below the ground level in Horonobe, Hokkaido, Japan

October 2024

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8 Reads

Microbiology Resource Announcements

A thiosulfate-oxidizing bacterium, Thiomicrospira sp. strain V2501, was isolated from groundwater collected in a terrestrial deep subsurface environment. This strain was capable of chemolithoautotrophic growth on CO2 and thiosulfate. Here, we report the 2,240,851 bp complete genome sequence of strain V2501.


Geological conditions and fluid flow history that lead to the development of large clastic dykes in basins: A case study from Kushiro, Japan

October 2024

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21 Reads

Basin Research

Large clastic dykes (the Harutori‐Taro and Harutori‐Jiro dykes) and smaller dykes are exposed in the underground Kushiro Coal Mine (KCM), Japan. This study examines these dykes as a case study to investigate the geological conditions and fluid flow history that lead to the development of large clastic dykes in basins. The composition of the dykes indicates the Beppo and/or Harutori formations as their parent unit. Crystallite size distribution (CSD) analysis reveals Ostwald ripening of the kaolinite in the kaolinitised feldspar from the dykes, suggesting stagnant conditions in the parent unit before the dyke was formed. In contrast, smectite CSDs and the high carbonate content of the dykes suggest that large volumes of fluid flowed through the dykes along the established hydraulic gradient, which was triggered by the breaking of the upper seal. The isotopic and chemical compositions of the calcite and aragonite in the dykes, with moderate siderite and rhodochrosite content, indicate the fluid was a warm (>30°C) mixture of freshwater and saltwater, which was transferred from deeper levels of the parent unit towards the crest of an anticline. Immediately after sand injection, the semi‐closed system of the parent unit near the root of the large dyke was transformed into a major flow channel for overpressurised fluids. Subsequently, a large volume of fluid flowed along the vertical conduit (or dyke) over a long period of time (>1 Myr), which removed fluid from a widespread area (i.e., several hundred square kilometres) of the basin. The results show that thin parent units, poor lateral continuity of the upper seal, and spatially heterogeneous overpressurisation do not preclude the formation of large dykes.


Evaluation of formation of solubility-limited solid phase of calcium- and magnesium-bearing immobilizers by microscopic observation and element mapping analysis.不溶化処理後のカルシウム系・マグネシウム系資材の固相観察および元素マッピング分析による溶解度制限固相の評価

September 2024

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5 Reads

Japanese Geotechnical Journal

To estimate the lifetime of an immobilizer used for countermeasures for disposing of excavated rocks containing hazardous trace elements such as arsenic, the appropriate method for evaluating the solubility of the immobilizer is required. In our previous study, the solubility-limiting solid phase that governs the solubility of the immobilizer, was assumed based on the saturation index (SI) of each mineral calculated using water chemistry of the leachate obtained by batch immobilization experiments. In this study, the formation of the solubility-limiting solid phases was confirmed by electron microscopic (EPMA) observation and elemental mapping analysis by using the residues of batch immobilization experiments. The results observed by EPMA showed that brucite as a solubility-limiting solid phase of Mg-bearing immobilizers, formed surrounding magnesium oxide. In case of using Ca-bearing immobilizers containing Mg, Mg ion was sorbed on calcite and dolomite-like secondary mineral was formed, which could behave as the solubility-limiting solid phase. These results indicate that the prediction of the solubility-limiting solid phase by SI based on the results of batch immobilization experiments was also consistent with and supported by the results of microscopic observations and elemental mapping analysis of the solid phase.




Citations (68)


... These facilities present environmental challenges, especially in addressing the persistent issue of acid mine drainage (AMD), which is a concern at many abandoned mine sites (Bhattacharya et al. 2006;Kim et al. 2002;Navarro et al. 2008;Soro et al. 2023;Wang et al. 2019). The AMD is primarily driven by the oxidation of sulfide minerals (Bhattacharya et al. 2006;Plumlee et al. 1999;Wunn et al. 2025), with pyrite (FeS 2 ) typically serving as a key initiator (Cidu et al. 2009;Tomiyama and Igarashi 2022). The oxidation of pyrite not only generates acidity but also facilitates the dissolution of other sulfide minerals co-occurring with pyrite, such as arsenopyrite (FeAsS), chalcopyrite (CuFeS 2 ), sphalerite (ZnS), and galena (PbS). ...

Reference:

Hydrogeochemical Characteristics of an Abandoned Copper Mine Tailings Storage Facility Producing Circumneutral Seepage Waters产生近中性渗出水的废弃铜矿尾矿储存场的地球化学特征Características hidrogeoquímicas del drenaje circumneutral procedente de una balsa de estériles de una mina de cobreHydrogeochemische Merkmale circumneutraler Sickerwässer der Spülhalde einer stillgelegten Kupfermine
Impact of effluents from a closed mine on the surrounding water resources: Groundwater contamination of the historical abandoned mine site in Japan

... Although the upstream waters had a pH < 6.5, no Cu or Zn were detected and therefore attenuation could be related to co-precipitation or adsorption with iron oxyhydroxides. Iron-oxyhydroxides have propensity to sequester dissolved Cu and Zn (Carlson et al. 2002;Kajiyoshi et al. 2024;Tabelin et al. 2018), consequently, decreasing the Fig. 3 Piper diagram for hydrogeochemical facies of upstream west, upstream east, tailing pore water, and seepage for July to November (a-e) available Cu and Zn to the environment. Meanwhile, the (K + + Na + -Cl − ) versus (Ca 2+ + Mg 2+ -HCO 3 − -SO 4 2− ) and Na + versus Cl − (supplemental Fig. S-4) showed that the pronounced Na and K in tailings pore water is attributed to water-tailings interaction, possibly through processes like phyllosilicates weathering or cation exchange, which could have influenced their concentrations from July to November. ...

Long-term performance of the adsorption layer system for the recycling and repurposing of arsenic-bearing mudstone as road embankment
  • Citing Article
  • July 2024

Chemosphere

... Large-scale excavation projects, including tunnel construction, are essential for infrastructure development and underground space utilization. However, these activities generate substantial volumes of the excavated rocks [1][2][3][4], some of which may pose environmental risk due to the presence of potentially toxic elements (PTEs). For example, marine-derived mudstone and hydrothermally altered rocks often contain PTEs, such as arsenic (As) and lead (Pb) [5][6][7]. ...

Frequency distribution of naturally occurring arsenic leached from excavated rocks of Hokkaido Shinkansen tunnels between Shin-Hakodate-Hokuto and Oshamambe
  • Citing Article
  • June 2024

SOILS AND FOUNDATIONS

... Remarkably, the result showed that the 750 • C-sample had better antioxidant molecule (reduced glutathione) levels than 800 and 850 • C samples, while the 850 • C-sample had better antioxidant enzyme (superoxide dismutase and catalase) activities than 750 and 800 • C samples during in vitro study. The in vitro evaluation of the TCPM had better GSH, CAT and SOD concentrations compared to the modified chicken manure reported by Soe et al. [38]. The result indicates TCPM at 750 • C had more antioxidant molecules as the thermal degradation of reduced glutathione is minimized at this temperature in comparison to higher temperatures. ...

Effect of chicken manure amendment on lead burden in mice: exposure to lead-spiked soil

Journal of Soils and Sediments

... Sulfide oxidation can enrich the tailings pore water with high concentrations of sulfate (SO 4 2 ⁻) and potentially toxic elements, including arsenic (As), selenium (Se), copper (Cu), cadmium (Cd), iron (Fe), lead (Pb), and zinc (Zn) (Boualem and Egbueri 2024;Demir et al. 2013;Egbueri et al. 2024;Qian et al. 2021;Park et al. 2019;Tabelin et al. 2018). Mobilization of these elements can be detrimental to human health and the surrounding environment (Aralu et al. 2024;Bouselsal et al. 2024;Buch et al. 2021;Byrne et al. 2018;Mufalo et al. 2024;Nakamura et al. 2022;Nishimoto et al. 2021;Rahman and Singh 2019). For instance, elevated concentrations of Cd, Pb, and Zn have been reported in both arable and pasture soils in San Quintín, Spain, originating from nearby tailings associated with a historic Pb-Zn mine (Rodríguez et al. 2009). ...

Insights on hazardous metal bioaccessibility, and groundwater impacted by Zn residues from a legacy mine and risk evaluation of adjacent soils

Environmental Geochemistry and Health

... Tailings, residual by-products of ore extraction processes, are commonly stored in engineered containment systems known as tailings storage facility (TSF). These facilities present environmental challenges, especially in addressing the persistent issue of acid mine drainage (AMD), which is a concern at many abandoned mine sites (Bhattacharya et al. 2006;Kim et al. 2002;Navarro et al. 2008;Soro et al. 2023;Wang et al. 2019). The AMD is primarily driven by the oxidation of sulfide minerals (Bhattacharya et al. 2006;Plumlee et al. 1999;Wunn et al. 2025), with pyrite (FeS 2 ) typically serving as a key initiator (Cidu et al. 2009;Tomiyama and Igarashi 2022). ...

Geochemical Characterization of Rock Samples from Selected Fiji Mine Sites to Evaluate On-Site Environmental Vulnerabilities

... The circumneutral pH in NMD is influenced by the precipitation and dissolution kinetics of the elements within the tailings (Lindsay et al. 2009;Ljungberg and Ohlander 2001;Rodríguez et al. 2009), which are intricately influenced by a range of geochemical factors, such as the presence of ironoxyhydroxides (Tabelin et al. 2018), carbonates (Tangviroon et al. 2020) and/or silicate minerals (Otunola et al. 2020). These secondary minerals may serve as nucleation sites or alter the solution chemistry, thereby affecting the solubility and subsequent precipitation of metal complexes (Hansen et al. 2005;Mufalo et al. 2023;Tabelin et al. 2018). For example, carbonates tend to bind potentially toxic elements, retaining them in carbonate forms, while ferric ions from sulfide oxidation may precipitate as iron-oxyhydroxides directly onto the surface of the oxidized pyrite (Lindsay et al. 2009;Sracek et al. 2011). ...

Immobilization of Pb and Zn leached from mining residue materials in Kabwe, Zambia: Performance of calcined dolomite in column experiments
  • Citing Article
  • March 2023

Journal of Geochemical Exploration

... The social cost combines negative effects into one monetary value. It is helpful in defining the pollution issue and serves as a basis for solution planning (Yamada et al., 2023). Underdeveloped nations, there is little information on how much it will cost socially. ...

Social cost of mining-related lead (Pb) pollution in Kabwe, Zambia, and potential remediation measures

The Science of The Total Environment

... Aspergil laceae is considered a potential biological control agent that has been shown to mitigate the deleterious effects of pathogens. Chaetomiaceae has been shown to be an endo phytic fungus in some plants (35) that can increase the growth rate of host plants and improve their biotic stress tolerance (36). Furthermore, ectomycorrhizal fungi, endo phytic fungi, and N-fixing bacteria were more abundant at HA than at LA (Fig. 7). ...

Oosporein Produced by Root Endophytic Chaetomium cupreum Promotes the Growth of Host Plant, Miscanthus sinensis, under Aluminum Stress at the Appropriate Concentration

... Unlike AMD, which is usually evident due to its low pH, NMD systems may lack obvious indicators, making detection and monitoring more difficult (Davies et al. 2011;Masuda et al. 2008). Additionally, the slow release of contaminants in NMD can lead to prolonged environmental impacts that may go unnoticed for years, requiring longterm monitoring and predictive modeling to assess the risks (Karmakar et al 2023;Pat-Espadas et al. 2018;Sracek et al. 2011;Tabelin et al. 2022). Furthermore, the longevity of neutralizing minerals in TSF is finite, meaning that NMD systems may transition to AMD over time if the buffering capacity of the neutralizing minerals are depleted. ...

Geochemical audit of a historical tailings storage facility in Japan: Acid mine drainage formation, zinc migration and mitigation strategies
  • Citing Article
  • June 2022

Journal of Hazardous Materials