Tomas Urbina’s research while affiliated with Sorbonne University and other places

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Publications (104)


Mortality, functional outcome and health-related quality of life in patients with necrotizing skin- and soft tissue infections in the ICU: Protocol of a multinational prospective cohort study (SKIN-ICU)
  • Article

March 2025

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64 Reads

Infectious Diseases Now

Tomas Urbina

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Martin Bruun Madsen

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Camille Hua

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Fig. 1 Correlation between capillary refill time and skin blood flow at baseline. A Correlation between CRT and SBF measured on the index, B in patients with (red) or without norepinephrine (blue) C in patients with (green) or without sepsis (black). Spearman test. CRT, capillary refill time; SBF, skin blood flow; PU, perfusion units
Fig. 4 Variations of skin blood flow in survivors and non survivors. Variations between T0 and T1 of SBF in survivors with initial CRT > 2.5 s A and in non survivors C Example of variations between T0 (blue) and T1 (red) of SBF in a survivor B and a non-survivor D. CRT, capillary refill time; SBF, skin blood flow; PU, perfusion units
Relationship between skin microvascular blood flow and capillary refill time in critically ill patients
  • Article
  • Full-text available

February 2025

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20 Reads

Critical Care

Background Capillary refill time (CRT) and skin blood flow (SBF) have been reported to be strong predictors of mortality in critically ill patients. However, the relationship between both parameters remains unclear. Methods We conducted a prospective observational study in a tertiary teaching hospital. All patients older than 18 years admitted in the intensive care unit (ICU) with circulatory failure and a measurable CRT were included. We assessed index SBF by laser doppler flowmetry and CRT on the fingertip, at T0 (Within the first 48 h from admission) and T1 (4 to 6 h later). Correlation was computed using Spearman or Pearson’s formula. Results During a 2-month period, 50 patients were included, 54% were admitted for sepsis. At baseline median CRT was 2.0 [1.1–3.9] seconds and median SBF was 46 [20–184] PU. At baseline SBF strongly correlated with CRT (R² = 0.89; p < 0.0001, curvilinear relationship), this correlation was maintained whether patients were septic or not (R² = 0.94; p = 0.0013; R² = 0.87; p < 0.0001, respectively), and whether they received norepinephrine or not (R² = 0.97; p = 0.0035; R² = 0.92; p < 0.0001, respectively). Between T0 and T1, changes in SBF also significantly correlated with changes in CRT (R² = 0.34; p < 0.0001). SBF was related to tissue perfusion parameters such as arterial lactate level (p = 0.02), whilst no correlation was found with cardiac output. In addition, only survivors significantly improved their SBF between T0 and T1. SBF was a powerful predictor of day-28 mortality as the AUROC at T0 was 85% [95% IC [76–91]] and at T1 90% [95% IC [78–100]]. Conclusion We have shown that index CRT and SBF were correlated, providing evidence that CRT is a reliable marker of microvascular blood flow. Trial registration Comité de protection des personnes Ouest II N° 2023-A02046-39. Supplementary Information The online version contains supplementary material available at 10.1186/s13054-025-05285-y.

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Neurological manifestations in patients with VEXAS syndrome

February 2025

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85 Reads

Journal of Neurology

VEXAS syndrome (Vacuoles, E1 enzyme, X-linked, Autoinflammatory, Somatic) is a recently described syndrome linked to somatic mutations in the UBA1 gene, causing systemic autoinflammatory manifestations. To date, few data are available concerning neurological manifestations. The aim of this study was to describe their prevalence, clinical spectrum and outcome under treatment. Retrospective multicentre study including patients with VEXAS syndrome from the French VEXAS Registry between November 2020 and March 2023. Additional cases were included after a national call for observations. Each patient with confirmed UBA1 somatic mutation and neurological manifestation was reviewed during multidisciplinary meetings. Clinical, radiological, biological characteristics, treatments, and outcome were described. Of the 291 patients included in the French VEXAS Registry, 17 (6%) had central (CNS) or peripheral (PNS) neurological involvement, with 13 additional cases identified by the national call. Of the 30 patients included, 21 (70%) had PNS involvement and 9 (30%) CNS involvement. PNS involvements included polyneuropathy (n = 9), cranial nerve involvement (n = 7), non-length-dependent polyneuropathy (n = 5) and multiple mononeuropathy (n = 3). CNS involvements included encephalopathy (n = 6), lacunar cerebral infarcts (n = 4), posterior reversible encephalopathy syndrome (n = 3) and optic perineuritis (n = 2). Most neurological manifestations were improved by steroids (68%), steroid-sparing agents were used in 90% [most frequently ruxolitinib (n = 11), azacitidine (n = 8), tocilizumab (n = 4)], and mortality was 30% after a median follow-up of 4 years. Neurological manifestations may occur in a small but possibly underestimated proportion of patients with VEXAS syndrome, are heterogeneous and can involve both PNS and CNS.


Fig. 1 Study Flow chart. Contaminations were defined as any positive blood cultures not requiring treatment (antibiotic treatment or catheter removal) according to treating physician
Characteristics of bloodstream infections according to source of infection
Bloodstream infections among patients receiving therapeutic plasma exchanges in the intensive care unit: a 10 year multicentric study

July 2024

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35 Reads

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1 Citation

Annals of Intensive Care

Background Therapeutic plasma exchanges (TPE), which affect the humoral response, are often performed in combination with immunosuppressive drugs. For this reason, TPE may be associated with an increased susceptibility to infections. We aimed to describe blood stream infection (BSI) incidence in ICU patients treated with TPE and to identify associated risk factors. Methods We retrospectively included patients that had received at least one session of TPE in the ICU of one of the 4 participating centers (all in Paris, France) between January 1st 2010 and December 31th 2019. Patients presenting with a BSI during ICU stay were compared to patients without such an infection. Risk factors for BSI were identified by a multivariate logistic regression model. Results Over 10 years in the 4 ICUs, 387 patients were included, with a median of 5 [2–7] TPE sessions per patient. Most frequent indications for TPE were thrombotic microangiopathy (47%), central nervous system inflammatory disorders (11%), hyperviscosity syndrome (11%) and ANCA associated vasculitis (8.5%). Thirty-one patients (8%) presented with a BSI during their ICU stay, a median of 7 [3–11] days after start of TPE. In a multivariate logistic regression model, diabetes (OR 3.32 [1.21–8.32]) and total number of TPE sessions (OR 1.14 [1.08–1.20]) were independent risk factors for BSI. There was no difference between TPE catheter infection related BSI (n = 11 (35%)) and other sources of BSI (n = 20 (65%)) regarding catheter insertion site (p = 0.458) or rate of TPE catheter related deep vein thrombosis (p = 0.601). ICU course was severe in patients presenting with BSI when compared to patients without BSI, with higher need for mechanical ventilation (45% vs 18%, p = 0.001), renal replacement therapy (42% vs 20%, p = 0.011), vasopressors (32% vs 12%, p = 0.004) and a higher mortality (19% vs 5%, p = 0.010). Conclusion Blood stream infections are frequent in patients receiving TPE in the ICU, and are associated with a severe ICU course. Vigilant monitoring is crucial particularly for patients receiving a high number of TPE sessions.


Flow chart
ICU: intensive care unit, HFNO: high-flow nasal oxygen, NIV: noninvasive ventilation
Comparison of Kaplan-Meier survival curves between straight intubation after HFNO failure group and NIV after HFNO failure group. Abbreviations: HFNO: high flow nasal oxygenation. NIV: noninvasive ventilation
Effect of noninvasive ventilation on mortality and clinical outcomes among patients with severe hypoxemic COVID-19 pneumonia after high-flow nasal oxygen failure: a multicenter retrospective French cohort with propensity score analysis

July 2024

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67 Reads

Respiratory Research

Background We assessed the effect of noninvasive ventilation (NIV) on mortality and length of stay after high flow nasal oxygenation (HFNO) failure among patients with severe hypoxemic COVID-19 pneumonia. Methods In this multicenter, retrospective study, we enrolled COVID-19 patients admitted in intensive care unit (ICU) for severe COVID-19 pneumonia with a HFNO failure from December 2020 to January 2022. The primary outcome was to compare the 90-day mortality between patients who required a straight intubation after HFNO failure and patients who received NIV after HFNO failure. Secondary outcomes included ICU and hospital length of stay. A propensity score analysis was performed to control for confounding factors between groups. Exploratory outcomes included a subgroup analysis for 90-day mortality. Results We included 461 patients with HFNO failure in the analysis, 233 patients in the straight intubation group and 228 in the NIV group. The 90-day mortality did not significantly differ between groups, 58/228 (25.4%) int the NIV group compared with 59/233 (25.3%) in the straight intubation group, with an adjusted hazard ratio (HR) after propensity score weighting of 0.82 [95%CI, 0.50–1.35] (p = 0.434). ICU length of stay was significantly shorter in the NIV group compared to the straight intubation group, 10.0 days [IQR, 7.0-19.8] versus 18.0 days [IQR,11.0–31.0] with a propensity score weighted HR of 1.77 [95%CI, 1.29–2.43] (p < 0.001). A subgroup analysis showed a significant increase in mortality rate for intubated patients in the NIV group with 56/122 (45.9%), compared to 59/233 (25.3%) for patients in the straight intubation group (p < 0.001). Conclusions In severely hypoxemic COVID-19 patients, no significant differences were observed on 90-day mortality between patients receiving straight intubation and those receiving NIV after HFNO failure. NIV strategy was associated with a significant reduction in ICU length of stay, despite an increase in mortality in the subgroup of patients finally intubated.



Fig. 1 Study flow chart. CAPA COVID-19-associated pulmonary aspergillosis; ICU intensive care unit
Fig. 2 a Simon-Makuch estimates of overall survival status from ICU admission to day-90 according to CAPA status; b Simon-Makuch estimates of overall survival status from ICU admission to day-90 according to CAPA status using landmark times at 5 days
Fig. 3 Unsupervised analysis of the clinical and biological characteristics of the by self-organized maps (SOMs). Unsupervised analysis by SOM automatically located patients with similar clinical and paraclinical parameters within 1 of 40 small groupings ("districts") throughout the map. The more similar the patients, the closer on the map. Each individual map shows the mean values or proportions per district for each characteristic: blue indicates the lowest average values, red the highest, with numbers shown for a selection of representative districts in each SOM. For instance, immunosuppressed patients were more frequently located in the upper districts and also had higher serum urea levels, less frequent Delta variant infection, higher SAPS II and SOFA scores and day-28 mortality rates. WHO World Health Organization, SOFA Sequential Organ Failure Assessment, SAPS II Simplified Acute Physiology Score II, MV mechanical ventilation
COVID-19 associated pulmonary aspergillosis in critically-ill patients: a prospective multicenter study in the era of Delta and Omicron variants

April 2024

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166 Reads

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5 Citations

Annals of Intensive Care

Background During the first COVID-19 pandemic wave, COVID-19-associated pulmonary aspergillosis (CAPA) has been reported in up to 11–28% of critically ill COVID-19 patients and associated with increased mortality. As new SARS-CoV-2 variants emerged, the characteristics of critically ill COVID-19 patients have evolved, particularly in the era of Omicron. The purpose of this study is to investigate the characteristics of CAPA in the era of new variants. Methods This is a prospective multicenter observational cohort study conducted in France in 36 participating intensive care units (ICU), between December 7th, 2021 and April 26th 2023. Diagnosis criteria of CAPA relied on European Confederation of Medical Mycology (ECMM)/International Society for Human & Animal Mycology (ISHAM) consensus criteria. Results 566 patients were included over the study period. The prevalence of CAPA was 5.1% [95% CI 3.4–7.3], and rose to 9.1% among patients who required invasive mechanical ventilation (IMV). Univariable analysis showed that CAPA patients were more frequently immunosuppressed and required more frequently IMV support, vasopressors and renal replacement therapy during ICU stay than non-CAPA patients. SAPS II score at ICU admission, immunosuppression, and a SARS-CoV-2 Delta variant were independently associated with CAPA in multivariable logistic regression analysis. Although CAPA was not significantly associated with day-28 mortality, patients with CAPA experienced a longer duration of mechanical ventilation and ICU stay. Conclusion This study contributes valuable insights into the prevalence, characteristics, and outcomes of CAPA in the era of Delta and Omicron variants. We report a lower prevalence of CAPA (5.1%) among critically-ill COVID-19 patients than previously reported, mainly affecting intubated-patients. Duration of mechanical ventilation and ICU stay were significantly longer in CAPA patients.


Fig. 1 Flow chart of the study
Antibiotics in ICU before VAP related enterobacterales according to ESBL-E
Multivariable analysis of risk factors of ESBL-E related VAP
Ventilator-associated pneumonia related to extended-spectrum beta-lactamase producing Enterobacterales during severe acute respiratory syndrome coronavirus 2 infection: risk factors and prognosis

April 2024

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314 Reads

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1 Citation

Critical Care

Background Patients infected with the severe acute respiratory syndrome coronavirus 2 (SARS-COV 2) and requiring mechanical ventilation suffer from a high incidence of ventilator associated pneumonia (VAP), mainly related to Enterobacterales. Data regarding extended-spectrum beta-lactamase producing Enterobacterales (ESBL-E) VAP are scarce. We aimed to investigate risk factors and outcomes of ESBL-E related VAP among critically ill coronavirus infectious disease-19 (COVID-19) patients who developed Enterobacterales related VAP. Patients and methods We performed an ancillary analysis of a multicenter prospective international cohort study (COVID-ICU) that included 4929 COVID-19 critically ill patients. For the present analysis, only patients with complete data regarding resistance status of the first episode of Enterobacterales related VAP (ESBL-E and/or carbapenem-resistant Enterobacterales, CRE) and outcome were included. Results We included 591 patients with Enterobacterales related VAP. The main causative species were Enterobacter sp (n = 224) , E. coli (n = 111) and K. pneumoniae (n = 104). One hundred and fifteen patients (19%), developed a first ESBL-E related VAP, mostly related to Enterobacter sp (n = 40), K. pneumoniae (n = 36), and E. coli (n = 31). Eight patients (1%) developed CRE related VAP. In a multivariable analysis, African origin (North Africa or Sub-Saharan Africa) (OR 1.7 [1.07–2.71], p = 0.02), time between intubation and VAP (OR 1.06 [1.02–1.09], p = 0.002), PaO 2 /FiO 2 ratio on the day of VAP (OR 0.997 [0.994–0.999], p = 0.04) and trimethoprim-sulfamethoxazole exposure (OR 3.77 [1.15–12.4], p = 0.03) were associated with ESBL-E related VAP. Weaning from mechanical ventilation and mortality did not significantly differ between ESBL-E and non ESBL-E VAP. Conclusion ESBL-related VAP in COVID-19 critically-ill patients was not infrequent. Several risk factors were identified, among which some are modifiable and deserve further investigation. There was no impact of resistance of the first Enterobacterales related episode of VAP on outcome.


Between-group differences based on clustering analysis
Clinical description and outcome of overall varicella-zoster virus-related organ dysfunctions admitted in intensive care units: the VAZOREA cohort study

March 2024

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31 Reads

Annals of Intensive Care

Background: Due to aging population and increasing part of immunocompromised patients, a raise in life-threatening organ damage related to VZV can be expected. Two retrospective studies were already conducted on VZV in ICU but focused on specific organ injury. Patients with high-risk of VZV disease still must be identified. The objective of this study was to report the clinical features and outcome of all life-threatening VZV manifestations requiring intensive care unit (ICU) admission. This retrospective cohort study was conducted in 26 French ICUs and included all adult patients with any life-threatening VZV-related event requiring ICU admission or occurring in ICU between 2010 and 2019. Results: One-hundred nineteen patients were included with a median SOFA score of 6. One hundred eight patients (90.8%) were admitted in ICU for VZV disease, leaving 11 (9.2%) with VZV disease occurring in ICU. Sixty-one patients (51.3%) were immunocompromised. Encephalitis was the most prominent organ involvement (55.5%), followed by pneumonia (44.5%) and hepatitis (9.2%). Fifty-four patients (45.4%) received norepinephrine, 72 (60.5% of the total cohort) needed invasive mechanical ventilation, and 31 (26.3%) received renal-replacement therapy. In-hospital mortality was 36.1% and was significantly associated with three independent risk factors by multivariable logistic regression: immunosuppression, VZV disease occurring in ICU and alcohol abuse. Hierarchical clustering on principal components revealed five phenotypically distinct clusters of patients: VZV-related pneumonia, mild encephalitis, severe encephalitis in solid organ transplant recipients, encephalitis in other immunocompromised hosts and VZV disease occurring in ICU. In-hospital mortality was highly different across phenotypes, ranging from zero to 75% (p < 0.001). Conclusion: Overall, severe VZV manifestations are associated with high mortality in the ICU, which appears to be driven by immunosuppression status rather than any specific organ involvement. Deciphering the clinical phenotypes may help clinicians identify high-risk patients and assess prognosis.


Prediction of esophagogastroduodenoscopy therapeutic usefulness for in-ICU suspected upper gastrointestinal bleeding: the SUGIBI score study

February 2024

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30 Reads

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1 Citation

Annals of Intensive Care

Background Suspected upper gastrointestinal bleeding (SUGIB) is a common issue during ICU stay. In the absence of specific guidelines on the indication and timing of esophagogastroduodenoscopy (EGD), there is substantial variability in EGD indication depending on accessibility and clinical presentation. This study aimed to investigate factors associated with the need for per-EGD hemostatic therapy and to create a score predicting therapeutic benefit of emergency bedside EGD in ICU patients with SUGIB. Methods We conducted a retrospective study in our ICU to identify factors associated with the need for hemostatic procedure during EGD performed for SUGIB. From this observational cohort, we derived a score predicting the need for hemostasis during EGD, the SUGIBI score. This score was subsequently validated in a retrospective multicenter cohort. Results Two hundred fifty-five patients not primarily admitted for GI bleeding who underwent a bedside EGD for SUGIB during their ICU stay were analyzed. The preeminent EGD indication were anemia (79%), melena (19%), shock (14%), and hematemesis (13%). EGD was normal in 24.7% of cases, while primary lesions reported were ulcers (23.1%), esophagitis (18.8%), and gastritis (12.5%). Only 12.9% of patients underwent hemostatic endotherapy during EGD. A SUGIBI score < 4 had a negative predictive value of 95% (91–99) for hemostatic endotherapy [AUC of 0.81; 0.75–0.91 ( p < 0.0001)]. The SUGIBI score for predicting the need for an EGD-guided hemostatic procedure was next validated in a multicenter cohort with an AUC of 0.75 (0.66–0.85) ( p < 0.0001), a score < 4 having a negative predictive value of 95% (92–97). Conclusions Our study shows that the therapeutic usefulness of bedside emergency EGD for SUGIB in critically ill patients is limited to a minority of patients. The SUGIBI score should help clinicians stratify the probability of a therapeutic EGD.


Citations (64)


... The recent Coronavirus disease 2019 pandemic caused by the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) has recently expanded the clinical scenarios of A. fumigatus infection to include COVID-19-associated pulmonary aspergillosis (CAPA) [4][5][6][7]. A multicenter study in France reported a 15% prevalence of CAPA in critically ill patients requiring invasive mechanical ventilation during the first wave [8], and a 5.1% prevalence in the Delta and Omicron waves, which rose to 9.1% among patients who required invasive mechanical ventilation [9]. Along with influenza-associated pulmonary aspergillosis, CAPA represents a form of viral-associated pulmonary aspergillosis in which a severe viral infection, likely by disrupting epithelial integrity and inducing a severe inflammatory response in critical patients, predisposes to the development of invasive fungal infection [7]. ...

Reference:

Protective Effect of Indole-3-Aldehyde in Murine COVID-19-Associated Pulmonary Aspergillosis
COVID-19 associated pulmonary aspergillosis in critically-ill patients: a prospective multicenter study in the era of Delta and Omicron variants

Annals of Intensive Care

... У реанимационных пациентов с сепсисом инфузия альбумина может привести к большему улучшению тканевой перфузии по сравнению с 0,9% изотоническим раствором натрия хлорида [7]. ...

Albumin versus saline infusion for sepsis-related peripheral tissue hypoperfusion: a proof-of-concept prospective study

Critical Care

... [4,5] The bacterial spectrum of VAP includes Gram-negative bacilli, noting that the most common isolated pathogens are Pseudomonas, Acinetobacter species, and Enterobacteriaceae. [6,7] In addition, Gram-positive bacteria, such as methicillin-resistant Staphylococcus aureus (MRSA), are also important pathogens associated with VAP. [2] The regional prevalence of these pathogens can vary, underscoring the importance of local antimicrobial stewardship and resistance surveillance programs. ...

Antibiotic definitive treatment in ventilator associated pneumonia caused by AmpC-producing Enterobacterales in critically ill patients: a prospective multicenter observational study

Critical Care

... Bertrand Guidet from the Hôpital Saint-Antoine was the most productive author. Dr Guidet has worked on studies related to very old critically ill patients, mainly on mortality in critically ill older patients in the ICU, [22,23] clinical treatment of old ICU patients, [24][25][26] outcomes of older patients with COVID-19, [27][28][29] and multicenter studies on critically ill older patients. [30,31] Eight of the top 10 journals publishing studies in this field were ranked as Q1 or Q2 journals, underscoring the significance and prominence of this research area as a current focal point. ...

Corticosteroids induce an early but limited decrease in IL-6 dependent pro-inflammatory responses in critically ill COVID-19 patients
  • Citing Article
  • January 2024

Minerva Anestesiologica

... On the other hand, to date, very few works have explored the host genetic factors possibly associated with persistent OD [18]. Our study aims to fill this knowledge gap by applying an approach that has recently proven powerful in the identification of genes associated with the host response to COVID-19 [19][20][21], namely the analysis of the genetic landscape of rare and common variants. In particular, our study focuses on the identification of rare and common biallelic variants in genes involved in the antiviral response regulation pathway, taking advantage of Whole Genome Sequencing (WGS) data of a cohort of deeply characterized Italian patients who suffered from COVID-19 presenting with long-lasting OD. ...

Correction: Rare predicted loss-of-function variants of type I IFN immunity genes are associated with life-threatening COVID-19

Genome Medicine

... Healthcare professionals must receive adequate training in catheter insertion and maintenance to minimize the risk of complications. Techniques such as ultrasound-guided catheter insertion can improve success rates and reduce the risk of vessel injury [84]. Additionally, proper flushing and locking protocols help maintain catheter patency and reduce the risk of occlusion and infection [85]. ...

Improvement of central vein ultrasound-guided puncture success using a homemade needle guide—a simulation study

Critical Care

... Sonoscore is the average decibel level of three consecutive coughs performed with maximum effort. Currently, there is only one related study that involved patients receiving invasive mechanical ventilation (43). The results indicated that a Sonoscore <67.1 dB was able to predict extubation failure. ...

Sonometric assessment of cough predicts extubation failure: SonoWean—a proof-of-concept study

Critical Care

... We extend our sincere gratitude to Dr. Wasiq and colleagues for their in-depth analysis of our work investigating bleeding risk in a prospective cohort of thrombocytopenic patients admitted to the ICU [1]. We are pleased to address and clarify their comments. ...

Prospective evaluation of bleeding risk among thrombocytopenic patients admitted in intensive care unit
  • Citing Article
  • August 2023

Journal of Critical Care

... Two large retrospective studies were able to identify risk factors regarding the epidemiology of lung abscesses. Pulmonary abscesses were more common in men aged 54-74 years [3,4], with a history of smoking, alcohol or other sedative use, and immunodeficiency. Also, significant literature relates improved dentition to decreased incidence of pulmonary abscess [4]. ...

Epidemiology and Clinical Patterns of Lung Abscesses in ICU: A French Multicenter Retrospective Study
  • Citing Article
  • August 2023

Chest

... If no multi-drug resistance (MDR) is suspected, piperacillin-tazobactam or meropenem may be used empirically, according to the local/regional prevalence of Enterobacterales producing extended-spectrum beta-lactamases (ESBLs) [1]. In selected cases, when risk factors for MDR are present (e.g., local ecology, previous/present colonization, health care-related acquisition, or previous antimicrobial therapy) treatment should include anti methicillin-resistant Staphylococcus aureus (MRSA) coverage (vancomycin, linezolid, or daptomycin) and/or MDR Gram-negative activity (ceftazidime-avibactam, ceftolozane-tazobactam, or cefiderocol) [11,12] (ESM). ...

Severe skin infections
  • Citing Article
  • July 2023

Current Opinion in Critical Care