Til Aach’s research while affiliated with University of Lübeck and other places

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Publications (351)


Bayesian spatio-temporal motion detection under varying illumination
  • Article

March 2015

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25 Reads

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17 Citations

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T. Aach

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V. Metzler

The detection of moving objects in image sequences acquired by a static camera is a demanding task in the presence of noise. With fast illumination variations detection becomes even more difficult since simple motion detection will always be subject to illumination artifacts. To solve these problems, we propose a Bayesian spatio-temporal motion detection algorithm combined with homomorphic filtering. The image sequence is modelled as being generated by an illumination and a reflectance component that are approximately separated by the filter. Detection of changes in the reflectance component is directly related to scene changes, i.e. object motion. Experimental results show that the presented method is considerably less sensitive to noise and time-varying scene illumination.


Diagnostic Cytometry

October 2013

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18 Reads

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3 Citations

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Chen Jin

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[...]

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Til Aach

While oral lesions that macroscopically are highly suspicious for cancer shall be submitted to scalpel-biopsy and histologic evaluation, the majority of facultatively precancerous lesions, such as leuko- and erythroplakias or even persistent lichen planus lesions, may be assessed by brush-biopsy and cytology. As this non-invasive procedure is well tolerated by patients, more lesions may be screened and thus more oral cancers may be found in early, curable stages. Oral brush-biopsies can easily be performed by dentists, dental surgeons and general practitioners. While sensitivity of exfoliative cytology alone is about 4 % lower than bioptic histology, the combination of the latter with DNA-image-cytometry reaches the same diagnostic accuracy as the former (sensitivity 97.8–100 %, specificity, 97.4–100 %). As clonal chromosomal- and DNA-aneuploidy mostly precede cytological and histological evidence of malignancy in the squamous epithelium, its detection allows the diagnosis of oral squamous cell carcinomas up to 2 years earlier. Moreover, the additional use of DNA-image cytometry is a reasonable tool for the assessment of the resection margins of squamous cell carcinomas. DNA-image-cytometry could help to find the appropriate treatment option for patients and thus might improve their prognosis. Diagnostic DNA-image-cytometry is an objective method and has internationally been standardized. Here for the first time we describe the performance of a device for automated screening of oral brush-biopsy-smears, based on a cascaded diagnostic strategy: (1) Automated selection of morphologically suspicious nuclei, (2) Interactive control and correction of these on digital image galleries, (3) DNA-measurements on these only, (4) Final diagnosis on DNA-histograms and nuclear morphology.


Fig. 1. Reduced FRAP in AK13-1 cells producing fl uorescent HK13 at increased times after seeding. Cells were grown for either 24 – 33 h (early) or 48 – 57 h (late) before bleaching. ( A ) Examples of fl uorescence images (sum projections at a z- resolution of 0.7 μ m) immediately after (0 min) and 25 min after bleaching are shown for early and late time points after seeding. The horizontal lines depict borders between bleached and unbleached regions. The cell circumference is also demarcated. Percentage values were de fi ned as 0% for the bleached half ( Upper ) and as 100% for the unbleached half ( Lower ) immediately after bleaching. The percent decrease of fl uorescence in the lower half after 25 min (precisely corresponding to the increase in fl uorescence in the upper half) was 
Fig. 2. Reduced KF motion, polymerization, and depolymerization at increased times after seeding. Keratin dynamics were recorded by high-resolution laser scanning microscopy at 30-s intervals for 15 min in AK13-1 cells expressing fl uorescent keratin 13 either at early (24 – 33 h) or late (48 – 57 h) time points after seeding. ( Upper ) Work fl ow is diagrammed as detailed in Materials and Methods . Denoising was performed using the method of Herberich et al. (15). Cell shape normalization was determined according to the method of Möhl et al. (39). Motion was determined according to the registration method of Herberich et al. (15) and the optimization of Komodakis and Tziritas (25) and Komodakis et al. (41). ( A, Top ) Derived color-coded speed heat maps of single cells at 27 h (early) and 54 h (late) after seeding. (Scale bar, 10 μ m.) ( Middle ) Correction of cell shape by converting the image data into a normalized circular cell resulted in the heat maps shown. ( Bottom ) Averaging of multiple independently derived heat maps ( n = 50 for early time points and n = 84 for late time points) led to the images depicted. ( B ) Histogram of the determined mean speeds of keratin motion in nonnormalized cells (nn) in nanometers per minute vs. normalized cells (n) in arbitrary units (au). Note that both methods detect a comparable and signi fi cant speed reduction at late time points after seeding ( P < 0.0001). ( C ) Vector maps correspond to the speed heat maps shown in A . The speed of motion is represented by different vector lengths. ( D ) Detail of vector maps in C ( Top ). ( E ) Sources and sinks corresponding to regions of assembly and disassembly, respectively, in color codes that were calculated for the cells whose speed and vector maps are depicted in the corresponding images of A and C . ( F ) Histogram provides a comparison of sources/sinks in arbitrary units determined for nonnormalized and normalized fl uorescence recordings. In both instances, sources/sinks decrease signi fi cantly (*** P < 0.0001) with increasing time after seeding. 
Fig. 3. EGF-induced increase of FRAP. AK13-1 cells synthesizing fl uorescent keratin 13 were grown for 48 – 57 h after seeding in serum-free medium on laminin-332. Imaging medium containing either 20 ng/mL EGF or no EGF was then substituted immediately before photobleaching of cell halves (time point = 0 min). FRAP was subsequently monitored as a measure of keratin translocation. Approximately 10% of cells that showed considerable contraction ( > 10% decrease in contact area during recording) were excluded from the analyses. The histogram reveals that FRAP increased in the presence of EGF. 
Fig. 4. EGF-induced increase of keratin dynamics. AK13-1 cells expressing fl uorescent keratin 13 were imaged by confocal laser scanning microscopy at 30-s intervals for 15 min before and for 15 min starting 3 min after addition of 20 ng/mL EGF. Image analysis was done as diagrammed in Fig. 2 and detailed in Materials and Methods . ( A ) Motion heat maps for a nonnormalized single cell ( Top ), the corresponding normalized cell ( Middle ), and the average of 16 normalized cells ( Bottom ). (Scale bar, 10 μ m.) ( B ) Histogram depicts the relative increase in speed in comparison to the speed measured before EGF addition determined for either the nonnormalized recordings or the normalized recordings. No signi fi cant differences are detectable between the two methods. ( C ) Vector heat maps correspond to the speed maps depicted in A . ( D ) Higher magni fi cation view is taken from C ( Middle ). The speed of motion is represented by different vector lengths. ( E ) Graphic representation of sources and sinks corresponds to the heat maps in A and the vector maps in C . ( F ) Histogram shows the overall increase of sources/sinks after addition of EGF. Zero percent corresponds to the level observed before EGF addition. Note that the measurements for the normalized and nonnormalized recordings do not differ. 
Measuring the regulation of keratin filament network dynamics
  • Article
  • Full-text available

June 2013

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137 Reads

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48 Citations

Proceedings of the National Academy of Sciences

The organization of the keratin intermediate filament cytoskeleton is closely linked to epithelial function. To study keratin network plasticity and its regulation at different levels, tools are needed to localize and measure local network dynamics. In this paper, we present image analysis methods designed to determine the speed and direction of keratin filament motion and to identify locations of keratin filament polymerization and depolymerization at subcellular resolution. Using these methods, we have analyzed time-lapse fluorescence recordings of fluorescent keratin 13 in human vulva carcinoma-derived A431 cells. The fluorescent keratins integrated into the endogenous keratin cytoskeleton, and thereby served as reliable markers of keratin dynamics. We found that increased times after seeding correlated with down-regulation of inward-directed keratin filament movement. Bulk flow analyses further revealed that keratin filament polymerization in the cell periphery and keratin depolymerization in the more central cytoplasm were both reduced. Treating these cells and other human keratinocyte-derived cells with EGF reversed all these processes within a few minutes, coinciding with increased keratin phosphorylation. These results highlight the value of the newly developed tools for identifying modulators of keratin filament network dynamics and characterizing their mode of action, which, in turn, contributes to understanding the close link between keratin filament network plasticity and epithelial physiology.

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Segmentation of colonic polyps in NBI-forming material using gabor filter-based multi-channel level sets

February 2013

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15 Reads

Das Narrow Band Imaging (NBI) erleichtert die Differenzierung zwischen Adenomen und harmlosen Darmwandgebilden (Hyperplasten) durch eine kontrastreiche Blutgefäßdarstellung. Dadurch wird eine automatische Segmentierung der Blutgefäße und Klassifizierung der Kolonpolypen hinsichtlich ihrer Entartungsfähigkeit ermöglicht. Eine erste Voraussetzung besteht in der automatisierten Trennung der Polypenoberfläche von der umliegenden Darmwand. In dieser Arbeit wird ein Verfahren vorgestellt, welches die Nachahmung der Fähigkeiten des Menschen zur Mustererkennung umsetzt. Die kombinierte Einbeziehung von Farbe und Textur gelingt mithilfe eines Gaußschen Farbmodells und Gaborfilterbasierten Aktiven Konturen. Eine Lokalisierungsgenauigkeit von 81 % und eine Spezifität von 94 % gewährleisten eine akkurate Polypensegmentierung durch die vorgestellte Level-Set-Methode und verprechen eine erfolgreiche Erkennung auch anderer Gewebe im Rahmen optischer sowie radiologischer Untersuchungen.


Orientation-Based Segmentation of Textured Images Using Graph-Cuts

January 2013

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17 Reads

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1 Citation

Communications in Computer and Information Science

In this work we present a hierarchical segmentation algorithm for textured images, where the textures are composed of different number of additively superimposed oriented patterns. The number of superimposed patterns is inferred by evaluating orientation tensor based quantities which can be efficiently computed from tensor invariants such as determinant, minors and trace. Since direct thresholding of these quantities leads to non-robust segmentation results, we propose a graph cut based segmentation approach. Our level dependent energy functions consist of a data term evaluating orientation tensor based quantities, and a smoothness term which assesses smoothness of the segmentation results. We present the robustness of the approach using both synthetic and real image data.


Shift Variance Measures for Multirate LPSV Filter Banks With Random Input Signals

October 2012

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39 Reads

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9 Citations

IEEE Transactions on Signal Processing

The linear periodically shift variant (LPSV) properties within critically sampled multirate FIR filter banks are generally analysed using deterministic signals. Periodic shift variance is, however, closely related to cyclostationarities introduced by the LPSV system into originally wide sense stationary (WSS) random signals passing through the system. We provide first a unified framework to measure both shift variance of the LPSV system and the amount of cyclostationarity it generates. In this respect, the key concept is the covariance operator associated to a random variable. Cyclostationarity of the variable translates to LPSV properties of the operators, and vice versa. We study several related concepts for the quantification of shift variance in operators and their interpretation in the stochastic setting. We then introduce a new concept called expected shift variance. Fourier-analytic expressions for the various measures are given, and subsequently used to derive explicit formulae for the case of critically sampled two-channel filter banks, as well as sharp upper bounds for unitary two-channel filter banks. Numerical evaluations of the measures show that they provide largely consistent rankings between various critically sampled two-channel filter banks.


Signal and Noise Modeling in Confocal Laser Scanning Fluorescence Microscopy

October 2012

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354 Reads

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15 Citations

Lecture Notes in Computer Science

Fluorescence confocal laser scanning microscopy (CLSM) has revolutionized imaging of subcellular structures in biomedical research by enabling the acquisition of 3D time-series of fluorescently-tagged proteins in living cells, hence forming the basis for an automated quantification of their morphological and dynamic characteristics. Due to the inherently weak fluorescence, CLSM images exhibit a low SNR. We present a novel model for the transfer of signal and noise in CLSM that is both theoretically sound as well as corroborated by a rigorous analysis of the pixel intensity statistics via measurement of the 3D noise power spectra, signal-dependence and distribution. Our model provides a better fit to the data than previously proposed models. Further, it forms the basis for (i) the simulation of the CLSM imaging process indispensable for the quantitative evaluation of CLSM image analysis algorithms, (ii) the application of Poisson denoising algorithms and (iii) the reconstruction of the fluorescence signal.


Volume-preserving correction for image registration using free-form deformations

September 2012

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70 Reads

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3 Citations

Proceedings / ICIP ... International Conference on Image Processing

Registration of an image non-rigidly to another one causes deformations, which generally do not preserve the initial volume. Volume preservation is however indispensable for observing tumors in medical images. This paper presents the correction of B-spline based registration to preserve the volume in observed regions. In contrast to other approaches, our solution is not obtained through energy minimization, but by calculating the correction parameters for the deformation directly. Especially for high resolution image data this strategy is very efficient in terms of computational expenses. We derive a closed form solution to optimize the registration with respect to the compression at a single point and then extend the problem to multiple points. Finally we prove also that the correction terms do not have any significant influence on the registration quality.


A vision based system for high precision online fabric defect detection

July 2012

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84 Reads

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14 Citations

A prototype system for automatic in-line flaw detection in industrial woven fabrics is presented. Where state of the art systems operate on low-resolved (≈ 200 ppi) image data, we describe here the process flow to segment single yarns in high-resolved (≈ 1000 ppi) textile images. This work is partitioned into two parts: First, mechanics, machine integration, vibration cancelling and illumination scenarios are discussed based on the integration into a real loom. Subsequently, the software framework for high precision fabric defect detection is presented. The system is evaluated on a database of 54 industrial fabric images, achieving a detection rate of 100% with minimal false alarm rate and very high defect segmentation quality.


Vision-based Auto-Teaching for automated PCB depaneling

July 2012

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82 Reads

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2 Citations

Machines for automated PCB depaneling have greatly improved the industrial production efficiency of electronic products. But the preparation for automated depaneling could be very complex and time-consuming. In this paper, we propose a novel systematic solution for this problem. Using a vision-based assistant system, called ”Auto-Teaching”, all connection tabs that should be milled off panels are detected automatically. Highly accurate milling curves are generated with respect to the geometry of the corresponding tabs. Then they could be easily converted into CNC code which drive milling cutters later. Moreover, placement suggestions of supporting pins used to fix panels are obtained. All image analysis functions are implemented in C++ and optimized to meet the minimal hardware and time requirements. Thus the whole process of the preparation is simplified for users and the PCB manufactures can benefit from reduced idle running of machines and labor costs.


Citations (67)


... Intermediate filaments have a tubular network structure similar to a blood vessel tree but with a higher branchness and a lower variability in radius. In [5] it was shown that image processing algorithms used for vessels' contrast enhancement and segmentation can be adapted to confocal images of intermediate filaments. ...

Reference:

An Algorithm for Individual Intermediate Filament Tracking: Methods and Protocols
FLUX-BASED 3D SEGMENTATION OF KERATIN INTERMEDIATE FILAMENTS IN CONFOCAL LASER SCANNING MICROSCOPY
  • Citing Conference Paper
  • January 2012

... The applied algorithms for the detection of DNA stemline and single-cell aneuploidy as specific marker for malignant cells were consented by the European Society for Analytical Cellular Pathology (ESACP) [25][26][27][28]. Stemlines <1.8c, >2.2c and <3.6c, >4.4c were interpreted as DNA stemline aneuploidy, and the occurrence of nuclei >9c was interpreted as single-cell aneuploidy. ...

Identification of Prostate Cancer Cell Nuclei for DNA-Grading of Malignancy
  • Citing Article
  • March 2012

... At present, computed tomography (CT) has become the most common imaging modality for the diagnosis of lung disease. In analysis of chest CTscans, pulmonary vascular extraction is often required before proceeding to diagnose disease and also is an important step in the treatment planning, and follow-up of lung diseases [1]. In computer-aided diagnosis of lung disease, pulmonary vascular extraction can reduce ambiguities and improve nodule detection performance [2] and is used to aid detection of other pulmonary anatomical structures such as airway tree, pulmonary tissue, lung vein, and artery [3][4][5]. ...

Pulmonary Vessel Segmentation for Multislice CT Data: Methods and Applications
  • Citing Chapter
  • August 2011

... In recent years, the management of medical images has become increasingly complex as the data are produced using equipment with digital techniques. Image management covers all the techniques used to store, communicate, transmit, archive and access (retrieve) image data efficiently [21,22]. For instance, a single grayscale radiograph in its original state may necessitate a storage capacity of several megabytes, for which compression techniques are applied. ...

Advances in medical image processing
  • Citing Article
  • February 2011

Computer Science - Research and Development

... We used Monte-Carlo simulation (GATE) of the NEMA image quality phantom to visualize the effect of different CRT values in TOF-PET reconstruction (figure 4). With 30 million simulated counts in 10 litre phantom volume and a cubic voxel size of 2 mm, the average number of counts per voxel in the central slice is 48 counts per voxel because of the triangular PET system sensitivity with only one bed position (Dey et al 2012). In our analytical theory on reconstruction image quality (Wieczorek 2010) ...

Fast convergence and low noise in time-of-flight PET reconstruction - Analytical theory and Monte Carlo simulation
  • Citing Conference Paper
  • January 2012

... The alignment of multispectral cameras can be realized using a beam splitter 10 or stereo matching. 11,12 In the stereo vision-based concept it is possible to additionally calculate the 3D locations of each matched image point pairs using the stereo calibration information. The recovered 3D information of scene can further serve as geometric data basis for the guidance of cleaning robots. ...

Spectral and Colorimetric Constancy and Accuracy of Multispectral Stereo Systems
  • Citing Article
  • January 2012

Conference on Colour in Graphics Imaging and Vision

... Because open field experiment to assay RSA features is taxing and expensive as well as destructive nature of field screening igniting considerable loss of the root geometry, especially when dealing with large number of plants and genotypes (Cristopher et al., 2013), a number of different indoor approaches/platforms have been developed, and are in practice for the comprehensive screening of RSA phenome in controlled platforms at different levels of throughput and cost (Tuberosa et al., 2002;Sanguineti et al., 2007;Nagel et al., 2009;Zhu et al., 2011;Grossman & Rice, 2012;Pacheco-Villalobos & Hardtke, 2012;Postma & Lynch, 2012;Bai et al., 2013;Lavenus et al., 2013;Watt et al., 2013;Wasson et al., 2014), for instance, using hydroponic culture (Ayalew et al., 2015;Kabir et al., 2015), gel filled chambers (Manschadi et al., 2008;Christopher et al., 2013), Germination bags (Robertson et al., 1979), sand filled pots (Waines and Ehdaie, 2007;Hamada et al., 2012), soil filled pots (Cao et al., 2014), clear pots (Richard et al., 2015), a germination paper-based 'pouch and wick' system (Atkinson et al., 2015), a paper-based 'cigar roll' system Bai et al., 2013) and soil-filled columns (Gregory et al., 2009). These reasonably pragmatic approaches, coupled with digital image analysis software, permit the rapid and reliable measurement of RSA over a large number of genotypes, which have been used to investigate the diversity and genetics of RSA in wheat (Xie et al., 2017). ...

Temperature responses of roots: impact on growth, root system architecture and implications for phenotyping

... Even though FFD is a versatile method for the parameterization and deformation of any given arbitrary two-or three-dimensional shape, there is no guarantee that provides the preservation of the shape's enclosed area or volume, respectively, after its application. In an effort to provide a remedy for this shortcoming, several approaches have been developed for the constrained deformation of 2D and 3D shapes in computer graphics and animation (Hahmann et al., 2005(Hahmann et al., , 2011Weng et al., 2006;Faltin et al., 2012), to produce visually attractive results and more realistic looking deformations. Alternatively, these techniques, could easily be adopted for the constrained deformation of aerodynamic shapes in an optimization process, to exactly preserve the crosssectional area of the reference airfoil and maintain, as far as possible, the required structural integrity of the optimal geometry. ...

Volume-preserving correction for image registration using free-form deformations
  • Citing Conference Paper
  • September 2012

Proceedings / ICIP ... International Conference on Image Processing

... Sekiranya pemotongan yang tidak kemas, isu kualiti akan timbul semasa proses pemotongan, sama ada elektrik atau mekanikal [14]. Hal ini menimbulkan kebimbangan tentang kualiti PCB, seperti kecacatan yang berlaku semasa pemotongan PCB, antaranya seperti gerigis, retak, pengelupasan atau serpihan topeng pateri [15]. Topeng pateri ialah lapisan nipis bahan polimer lapisan nipis yang biasanya berwarna hijau pada permukaan PCB. ...

Vision-based Auto-Teaching for automated PCB depaneling
  • Citing Conference Paper
  • July 2012

... The processing time of the algorithms revealed in [29,30] stays high at 5.2 s and 5.9 s, respectively. Furthermore, the methods proposed in [31,32] fail to give acceptably accurate performances, while detecting the finer defects in the fabrics. ...

A vision based system for high precision online fabric defect detection
  • Citing Conference Paper
  • July 2012