Thomas R. Fleming’s research while affiliated with University of Washington and other places

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Publications (332)


A Perspective on the Appropriate Implementation of ICH E9(R1) Addendum Strategies for Handling Intercurrent Events
  • Article
  • Full-text available

May 2025

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5 Reads

Statistics in Medicine

Thomas R Fleming

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Kevin J Carroll

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Janet T Wittes

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[...]

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Gregory Levin

In randomized clinical trials, stopping study medication, use of rescue treatment, and other intercurrent events can complicate interpretation of results. The ICH E9(R1) Addendum on estimands stimulated important cross‐disciplinary discussions on trial objectives. Unfortunately, with influence of the Addendum, many trials have proposed analyzing primary endpoints using “while on treatment”, “hypothetical”, or “principal stratum” strategies that handle intercurrent events in ways that use post‐randomization outcomes to exclude information from randomized participants and don't preserve integrity of randomization, or that don't reliably capture the intervention's meaningful net effects. These approaches have inherent limitations in ability to draw scientifically rigorous inference on clinically relevant causal effects important for decisions about adopting interventions. We describe advantages of trials with standard‐of‐care control arms targeting estimands using “treatment policy” approaches for intercurrent events, while potentially incorporating other meaningful intercurrent events, such as death, into the primary endpoint applying a composite strategy. Well‐designed and ‐conducted trials targeting such estimands achieve scientifically rigorous causal inference through analyzes that protect the integrity of randomization. Such estimands also provide meaningful information relevant to real‐world settings because they (1) are unconditional in nature i.e., they don't condition on post‐treatment circumstances that might not be many participants' experiences; and (2) properly evaluate the experimental intervention within a regimen that includes possible ancillary care that would be clinically appropriate in real‐world settings. We hope to add clarity about appropriate strategies for intercurrent events and how to improve design, conduct, and analysis of clinical trials to address questions of greatest clinical importance reliably.

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Kaplan–Meier curve of survival probability for patients who received NP001 at a dose of 2 mg/kg of chlorite compared with placebo. Blue line: 2 mg/kg dose, median survival 2.7 years (95% CI: 2.3, 3.5); red line: placebo, median survival 2.3 years (95% CI: 1.8, 2.9).
Kaplan–Meier curve of survival probability for patients ≤65 years old who received NP001 at a dose of 2 mg/kg compared with placebo. Blue line: 2 mg/kg dose, median survival 3.3 years (95% CI: 2.4, 3.9); red line: placebo, median survival 2.4 years (95% CI: 1.7, 3.3).
Kaplan–Meier curve of survival probability for patients >65 years old who received NP001 at a dose of 2 mg/kg compared with placebo. Blue line: 2 mg/kg dose, median survival 2.2 years (95% CI: 1.7, 3.4); red line: placebo, median survival 2.1 years (95% CI: 1.6, 3.4).
Baseline Demographic Characteristics for Patients Who Received at Least One Infusion of NP001.
Cont.
The Effectiveness of NP001 on the Long-Term Survival of Patients with Amyotrophic Lateral Sclerosis

October 2024

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50 Reads

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2 Citations

Background/Objectives: The aim of this study was to estimate the effect of a 6 months’ treatment course of the innate immune modulator NP001 (a pH-adjusted intravenous formulation of purified sodium chlorite), on disease progression, as measured by overall survival (OS) in patients with amyotrophic lateral sclerosis. Methods: Blinded survival data were retrospectively collected for 268 of the 273 patients who had participated in two phase 2 placebo-controlled clinical trials of NP001 (ClinicalTrials.gov: NCT01281631 and NCT02794857) and received at least one dose of either 1 mg/kg or 2 mg/kg of NP001 as chlorite based on actual body weight, or placebo. Kaplan–Meier methods were used on the intent-to-treat population to estimate survival probabilities. Results: In the overall population, the median OS was 4.8 months (2.7 years [95% CI: 2.3, 3.5] in the 2 mg/kg NP001group and 2.3 years [95% CI: 1.8, 2.9] in the placebo group). Hazard ratio (HR): 0.77 (95% CI: 0.57, 1.03), p = 0.073. Among patients aged ≤ 65 years, the median OS for the 2 mg/kg NP001 group was 10.8 months (3.3 years [95% CI: 2.4, 3.8] in the 2 mg/kg NP001 group and 2.4 years [95% CI: 1.7, 3.3] in the placebo group). HR: 0.69 (95% CI: 0.50, 0.95). No differences were observed in the 1 mg/kg NP001 group or in patients aged > 65 years. Conclusions: The findings from this study suggest that a 6 months’ treatment course of NP001 resulted in a 4.8-month increase in overall survival in patients with ALS. The findings from this study indicate that targeting inflammation associated with the innate immune system may provide a pathway for new therapeutic options for the treatment of ALS.


TABLE 1 Continued
Ongoing or recently completed phase 2 and phase 3 clinical trials in pulmonary arterial hypertension (PAH)
Clinical trial design, end-points, and emerging therapies in pulmonary arterial hypertension

August 2024

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109 Reads

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10 Citations

European Respiratory Journal

Clinical trials in pulmonary arterial hypertension (PAH) have led to the approval of several effective treatments that improve symptoms, exercise capacity and clinical outcomes. In phase 3 clinical trials, primary end-points must reflect how a patient “feels, functions or survives”. In a rare disease like PAH, with an ever-growing number of treatment options and numerous candidate therapies being studied, future clinical trials are now faced with challenges related to sample size requirements, efficiency and demonstration of incremental benefit on traditional end-points in patients receiving background therapy with multiple drugs. Novel clinical trial end-points, innovative trial designs and statistical approaches and new technologies may be potential solutions to tackle the challenges facing future PAH trials, but these must be acceptable to patients and regulatory bodies while preserving methodological rigour. In this World Symposium on Pulmonary Hypertension task force article, we address emerging trial end-points and designs, biomarkers and surrogate end-point validation, the concept of disease modification, challenges and opportunities to address diversity and representativeness, and the use of new technologies such as artificial intelligence in PAH clinical trials.


The Case for Access to Data Monitoring Committee Charters

August 2024

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22 Reads

NEJM Evidence

Clinical trials investigating novel or high-risk interventions often use data monitoring committees (DMCs) to ensure that the participants' best interests are safeguarded. The typical DMC charter describes procedures by which the DMC operates, including important details concerning organizational structure, membership, meeting frequency, statistical monitoring guidelines, and contents of DMC reports for interim review. These charters, however, are not routinely publicly available; in some cases, their access could be important to the interpretation of trial results. We recommend including DMC charters for such trials in ClinicalTrials.gov at the time of trial completion; trial protocols, informed consent documents, and statistical analysis plans are already available in this repository.







Citations (74)


... A recent study was published [11] that showed overall survival results from patients who participated in the two NP001 phase 2 trials. Phase 2A ended in 2012 and phase 2B ended in 2017, allowing a true long-term survival analysis. ...

Reference:

Respiratory Function Improvement and Lifespan Extension Following Immunotherapy with NP001 Support the Concept That Amyotrophic Lateral Sclerosis (ALS) Is an Immuno-Neurologic Disease
The Effectiveness of NP001 on the Long-Term Survival of Patients with Amyotrophic Lateral Sclerosis

... In previsione della prossima disponibilità di sotatercept, farmaco che costituisce una quarta via terapeutica completamente nuova in quanto non agisce come vasodilatatore ma riequilibrando il rapporto tra proliferazione e apoptosi cellulare (13), lo specialista dell'ipertensione polmonare dovrà posizionare il farmaco come consentito dalla scheda tecnica. Gli atti del simposio mondiale 2024 (14,15) suggeriscono di introdurre sotatercept nel follow-up, nei pazienti a rischio intermedio-basso, intermedio-alto e alto. Per ciascun trattamento si consiglia di considerare i le possibili reazioni avverse ed ogni altra importante indicazione (Tab. ...

Clinical trial design, end-points, and emerging therapies in pulmonary arterial hypertension

European Respiratory Journal

... There have been few new breakthroughs and innovations in the treatment of IPF in the past few years. New drugs such as connective tissue growth factor (CTGF) inhibitors and pentraxin analogues have not met expectations in phase III clinical trials [66], but these attempts have opened new avenues of exploration for the treatment of IPF. Due to hyperstability in the cell, as well as significant expression changes in response to specific disease states, circRNA can be used as biomarkers and therapeutic Fig. 9 Integrative analysis of proteomics and metabolomics. ...

Moving forward in IPF: lessons learned from clinical trials
  • Citing Article
  • June 2024

The Lancet Respiratory Medicine

... 23,24,25,26 For example, one might consider a Kaplan-Meier estimate of the 2-year survival probability to be mature provided that the width of its confidence interval is within a certain range ("precision" and "reliability"), or that the estimate will change little given longer follow-up ("stability"). In other cases, defining mature follow-up may be difficult (e.g., overall survival in indolent cancers 27 ). ...

Monitoring Overall Survival in Pivotal Trials in Indolent Cancers
  • Citing Article
  • June 2024

Statistics in Biopharmaceutical Research

... There are numerous features available for analysing and modifying images through dedicated software. Image manipulation using digital images represents a crucial aspect of image processing [1]. This process is employed to rectify signal data errors that arise during transmission and acquisition, as well as to enhance image quality, thereby facilitating interpretation by the human visual system [2]. ...

Training the Next Generation of Data Monitoring Committee Members
  • Citing Article
  • March 2024

... Idiopathic pulmonary fibrosis is a progressive lung disease significantly impacting 58 patients' quality of life. Patient-reported outcomes are increasingly recognized for their 59 ability to capture patient experience of health, encompassing how they feel and 60 function, which may not be reflected by clinical outcomes alone 1 . Understanding the 61 physical, emotional, and social impacts of patients with idiopathic pulmonary fibrosis, 62 ...

Meaningful Endpoints for Idiopathic Pulmonary Fibrosis (IPF) Clinical Trials: Emphasis on 'Feels, Functions, Survives'
  • Citing Article
  • January 2024

American Journal of Respiratory and Critical Care Medicine

... The results indaicate that major motor seizures frequency were reduced in patients receiving GNX (− 32.2%) compared to those receiving placebo (4.0%). In the same trials 7 patients were codiagnosed with Lennox-Gastaud Syndrome, and 4 of them demonstrated improvement in seizure frequency (mean 31.5% reduction in major motor seizure frequency) (NCT03572933) (Pestana-knight et al., 2020). In 2022 the Ztalmy (ganaxolone in form of oral suspension) was approved by FDA and now it is commercialy available for treatment of CDKL5 deficiency disorder (Knight et al., 2022). ...

Ganaxolone Significantly Reduces Major Motor Seizures Associated with CDKL5 Deficiency Disorder: A Randomized, Double-blind, Placebo-Controlled Phase 3 Study (S13.009)
  • Citing Article
  • May 2022

Neurology

... The high cost of many new medicines has created significant challenges in the accessibility of cancer treatment for patients and healthcare systems [6]. The rapidly changing treatment landscape, combined with marginal clinical gains and high costs for many therapies, creates an immensely challenging environment for national governments, policymakers, regulators, private payers, patients, and clinicians around the world [7]. Therefore, drug repurposing is a good strategy to try to decrease the cost of antitumor drugs. ...

Global Cancer Drug Development-A Report From the 2022 Accelerating Anticancer Agent Development and Validation Meeting

JCO Global Oncology

... In adaptive clinical trial designs, the conditional power is one standard tool for evaluating the chance of study success through interim analyses, given the observed amount of data. Based on this interim assessment (sometimes supported by simulations), an independent data monitoring committee will issue adaptation recommendations, such as changing the sample size [33,34]. Ideally, during the implementation of platform trials, similar conditional evaluations should be considered whenever a decision to include a new intervention is undertaken. ...

Bringing data monitoring committee charters into the sunlight
  • Citing Article
  • May 2023

Clinical Trials

... Although biomarker-driven subgroup analyses are popular, concerns about their statistical validity have emerged (Huber et al. 2025;McShane et al. 2023a). For example, model-based analyses, which rely on model assumptions and asymptotic approximations, can exhibit inflated type I errors in the presence of model misspecification and small-sample clinical trials (Athey and Imbens 2015;Burke et al. 2015). ...

Finding the (biomarker-defined) subgroup of patients who benefit from a novel therapy: No time for a game of hide and seek

Clinical Trials