Thomas F. McCutchan’s research while affiliated with Second Military Medical University, Shanghai and other places

What is this page?


This page lists works of an author who doesn't have a ResearchGate profile or hasn't added the works to their profile yet. It is automatically generated from public (personal) data to further our legitimate goal of comprehensive and accurate scientific recordkeeping. If you are this author and want this page removed, please let us know.

Publications (199)


Chemical structures of BMS249524 (parent compound) and its semisynthetic analogues BMS461996 and BMS411886, the focus of this study (15).
Dose-response curve for CQ and nocathiacin derivatives BMS461996 and BMS411886. (A) P. falciparum 3D7 CQ-sensitive parasite line; (B) P. falciparum Dd2 parasite line; (C) P. falciparum K1 parasite line.
In vitro effect of the nocathiacin derivative BMS461996 on the asexual blood stages of P. falciparum 3D7 after 24 h at the 100 nM concentration. Thin smears were stained with Giemsa stain. (A) Untreated control culture; (B) culture treated with 100 nM BMS461996. Similar results were observed at the 48-h time point.
In vitro effect of BMS461996 on the P. falciparum 3D7 gametocytes over a 5-day period. (A) Control untreated gametocytes; (B) gametocytes cultured in the presence of 100 nM; (C) gametocytes cultured in the presence of 1 μM.
In Vitro Antimalarial Activity of Novel Semisynthetic Nocathiacin I Antibiotics
  • Article
  • Full-text available

May 2015

·

39 Reads

·

18 Citations

·

·

Thomas F. McCutchan

Presently the arsenal of anti-malarial drugs is limited and needs to be replenished. We evaluated the potential anti-malarial activity of two water soluble derivatives of nocathiacin (BMS461996 and BMS411886) against asexual blood stages of Plasmodium falciparum. Nocathiacins are a thiazolyl peptide group of antibiotics, structurally related to thiostrepton, have potent activity against a wide spectrum of multi drug resistant gram positive bacteria, and inhibit protein synthesis. We evaluated the potential anti-malarial activity of the derivatives of nocathiacin (BMS461996 and BMS411886) against asexual blood stages of Plasmodium falciparum. The in vitro growth inhibition assay was done using three laboratory strains of P. falciparum displaying varying levels of chloroquine (CQ) susceptibility. Our results indicates that, BMS461996 has potent anti-malarial activity and inhibits parasite growth with mean IC50 of 51.55 nM for P. falciparum 3D7 (CQ susceptible), 85.67 nM for P. falciparum Dd2 (accelerated resistance to multiple drugs, ARMD) and 99.44 nM for P.falciparum K1 strain (resistant to CQ, pyrimethamine and sulfadoxine). Similar results at approximately 7-fold higher IC50 values were obtained with BMS411886 in comparison to BMS461996. We also tested the effect of BMS491996 on gametocytes, our results show that at 20 fold excess of mean IC50 concentration, gametocytes were deformed with a pyknotic nucleus and growth of stage I-IV gametocytes was arrested. This preliminary study shows significant potential for nocathiacin analogues to be developed as anti-malarial drug candidates and warrants further investigation. Copyright © 2015, American Society for Microbiology. All Rights Reserved.

Download

Regulation of Plasmodium yoelii Oocyst Development by Strain- and Stage-Specific Small-Subunit rRNA

March 2015

·

526 Reads

·

14 Citations

·

Feng Zhu

·

·

[...]

·

Xin-zhuan Su

One unique feature of malaria parasites is the differential transcription of structurally distinct rRNA (rRNA) genes at different developmental stages: the A-type genes are transcribed mainly in asexual stages, whereas the S-type genes are expressed mostly in sexual or mosquito stages. Conclusive functional evidence of different rRNAs in regulating stage-specific parasite development, however, is still absent. Here we performed genetic crosses of Plasmodium yoelii parasites with one parent having an oocyst development defect (ODD) phenotype and another producing normal oocysts to identify the gene(s) contributing to the ODD. The parent with ODD—characterized as having small oocysts and lacking infective sporozoites—was obtained after introduction of a plasmid with a green fluorescent protein gene into the parasite genome and subsequent passages in mice. Quantitative trait locus analysis of genome-wide microsatellite genotypes of 48 progeny from the crosses linked an ~200-kb segment on chromosome 6 containing one of the S-type genes (D-type small subunit rRNA gene [D-ssu]) to the ODD. Fine mapping of the plasmid integration site, gene expression pattern, and gene knockout experiments demonstrated that disruption of the D-ssu gene caused the ODD phenotype. Interestingly, introduction of the D-ssu gene into the same parasite strain (self), but not into a different subspecies, significantly affected or completely ablated oocyst development, suggesting a stage- and subspecies (strain)-specific regulation of oocyst development by D-ssu. This study demonstrates that P. yoelii D-ssu is essential for normal oocyst and sporozoite development and that variation in the D-ssu sequence can have dramatic effects on parasite development.



FIGURE 1. Map of 2008-2009 sample sites. Total of 8 sites located on Isabela and Fernandina islands. Numbers in parentheses show prevalence of parasite DNA by PCR and seroprevalence (no. PCR positive/total) (no. seropositive/total). 
FIGURE 2. Standard. Pool of 3 penguins from the 2008 field season that amplify as Plasmodium on PCR, run in serial dilution from 1/100 to 1/ 1,600 on each plate. Curve includes the mean absorbance values across 10 plates 6 SD. 
FIGURES 3-5. (3) 2008-2009 absorbance distribution. Box plots displaying antibody levels, as shown by absorbance (630 nm), of 181 total penguins, 149 adults, 24 juveniles, and 8 penguins of undetermined age. Positive cut-off indicated by dotted line at an absorbance of 0.044. (4) 2008-2009 penguins by age group. Box plots displaying distribution of antibody levels, as shown by absorbance (630 nm), for juvenile and adult penguins. Juveniles (n ¼ 24), adults (n ¼ 149). Positive cut-off indicated by dotted line at an absorbance of 0.044. (5) Comparison over time. Distribution of antibody levels, as shown by absorbance (630 nm), of 64 penguins from the 2004-2005 field seasons as compared to 181 penguins from the 2008-2009 field seasons. Positive cut-off indicated by dotted line at an absorbance of 0.044. 
Seroprevalence of Malarial Antibodies in Galapagos Penguins (Spheniscus mendiculus)

April 2013

·

218 Reads

·

28 Citations

Journal of Parasitology

Abstract Plasmodium parasites have recently been documented in the endangered Galapagos penguin (Spheniscus mendiculus). Because avian malaria (caused by Plasmodium spp.) causes high mortality in other avian species after initial exposure, there is great concern for the conservation of the endemic Galapagos penguin. Using a Plasmodium spp. circumsporozoite protein antigen, we have standardized an enzyme-linked immunosorbent assay (ELISA) to test the level of exposure to the parasite in this small population, as indicated by seroprevalence. Sera from adult and juvenile Galapagos penguins collected between 2004 and 2009 on the Galapagos archipelago was tested for the presence of anti - Plasmodium spp. antibodies. Penguins were also tested for prevalence of avian malaria parasite DNA, determined by polymerase chain reaction (PCR) screening. Total seroprevalence of malarial antibodies in this sample group was 97.2%, while total prevalence of Plasmodium parasite DNA by PCR screening was 9.2%. This large discrepancy suggests high exposure to the parasite and low Plasmodium - induced mortality, at least under normal environmental conditions. The results of this study also suggest that parasite prevalence may be under-detected through PCR screening and multiple detection methods are necessary to better understand the extent of Plasmodium exposure on the archipelago.


Figure 1: Geographic distribution of P.vivax isolates collected in China. (b) Diagram of pvpppk-dhps, pvdhfr and the flanking microsatellites, and the strategy of amplifying.
Figure 2: Network diagram depicting three independent origins for different mutant dhfr alleles in China. The network diagram showing the origins for mutant pvdhfr alleles in China based on the 6-loci microsatellite profile around dhfr. The size of the circle is proportional to the number of isolates harboring particular haplotype. The proportion of dhfr alleles on that haplotype background are indicated in pie charts. The lines represent evolutional steps. The gray dots represent hypothetical median vectors. (b) Network diagram assessing the evolution of the resistance-conferring mutations in P.vivax dhps-pppk genes in Yunnan. The network diagram showing the evolution of the mutations in pvdhps-pppk in Yunnan based on the mutation in dhps-pppk gene and intron region. The size of the circle is proportional to the number of isolates showing particular allele. The lines represent evolutional steps connecting haplotypes.
Table 2 | Linkage disequilibrium values D' and r 2
Anti-folate combination therapies and their effect on the development of drug resistance in Plasmodium vivax

January 2013

·

78 Reads

·

22 Citations

Can we predict the rise and spread of resistance to multi-drug therapy in a more predictable manner? We raise this question after analyzing over 500 Plasmodium vivax isolates collected from different, geographically isolated regions of China for sequence variation in and around the dhfr and dhps genes. We find: that resistance lineages have arisen at least once in each region; that there appears to have been little movement of parasite populations between these areas; and that highly resistant parasites contain dhfr and dhps alleles that are in linkage disequilibrium. We show a direct relationship between this linkage disequilibrium and a parasite's fitness in the absence of drug pressure. Such fitness would increase the spread of drug resistant phenotypes and is thus a selectable trait. These conclusions raise questions about the appropriate use of some other drug combinations to prevent and treat infection.



Radiation Induced Cellular and Molecular Alterations in Asexual Intraerythrocytic Plasmodium falciparum Parasites.

October 2012

·

296 Reads

·

21 Citations

The Journal of Infectious Diseases

Background: γ-irradiation is commonly used to create attenuation in Plasmodium parasites. However, there are no systematic studies on the survival, reversion of virulence, and molecular basis for γ-radiation-induced cell death in malaria parasites. Methods: The effect of γ-irradiation on the growth of asexual Plasmodium falciparum was studied in erythrocyte cultures. Cellular and ultrastructural changes within the parasite were studied by fluorescence and electron microscopy, and genome-wide transcriptional profiling was performed to identify parasite biomarkers of attenuation and cell death. Results: γ-radiation induced the death of P. falciparum in a dose-dependent manner. These parasites had defective mitosis, sparse cytoplasm, fewer ribosomes, disorganized and clumped organelles, and large vacuoles-observations consistent with "distressed" or dying parasites. A total of 185 parasite genes were transcriptionally altered in response to γ-irradiation (45.9% upregulated, 54.1% downregulated). Loss of parasite survival was correlated with the downregulation of genes encoding translation factors and with upregulation of genes associated with messenger RNA-sequestering stress granules. Genes pertaining to cell-surface interactions, host-cell remodeling, and secreted proteins were also altered. Conclusions: These studies provide a framework to assess the safety of γ-irradiation attenuation and promising targets for genetic deletion to produce whole parasite-based attenuated vaccines.



Figure 1: Analysis of Sj29 sequence. (A) Neighbor-joining tree of Sj29 alleles and Sm29 (AF029222) based on p, the proportion of amino acid difference was generated by using Mega 4. (B) Cladogram of Sj29.
Figure 2: Comparasion of the distribution of homozygotes and heterozygotes in immunized and control groups. Mice (10 per group) were immunized with the antigens (Sj29-2, Sj29-4 or Sj29-mix) adjuvanted by ISA 70 M, the adjuvant alone and PBS, respectively and challenged with cercariae. The survival worms from individual group were pooled for genotyping of Sj29 gene. The survival worms from were categorized as homozygotes (Homo-A, Homo-B), heterozygotes (Heter-A, Heter-B and AB) and others(Non-A, Non-B). The number of the surviving worms with various categorized genotypes in the immunization groups were compared to that in the control groups exception of the Sj29-mix group (D) where the data was converted before statistic analysis (see “Statistic Anaysis” in Method section). (A) Sj29-2 immunized group of the first experiment. (B) Sj29-2 immunized group of the second experiment. (C) Sj29-4 immunized group of the second experiment. (D) Sj29 multiple antigens immunized group.
Figure 3: Establishment and infection of clonal parasites. (A) Establishment of clonal parasites. Snails were infected with single miracidia. Then cercariae from snails were paired to infect rabbits and adult worms from each rabbit were genotyped. One pair showed only 2 alleles (i.e. Sj29-4/Sj29-4 homozygous female worms and Sj29-2/Sj29-4 heterozygous male worms). This clonal parasite of S. japonicum was designated Sj6M8. Eggs from this line were collected to establish clonal parasites. (B) Comparasion of the distribution of homozygotes and heterozygotes in Sj29-4 immunized and control groups infected with clonal parasites. N: the number of sequenced survival worms.
Having a pair: The key to immune evasion for the diploid pathogen Schistosoma japonicum

March 2012

·

85 Reads

·

10 Citations

Schistosomes, unlike malaria parasites, are in their diploid stage when targeted by the human immune system. Diploids can be either homozygous or heterozygous. The difference has profound significance for developing immunity and yet has not previously been addressed. We examined the implications of zygosity on immunity to a diploid pathogen, Schistosoma japonicum and showed that the diploid state, and its associated heterozygous advantage, significantly affects the outcome of attack by the immune system and the accumulation of antigenic diversity in the parasite population. We demonstrate here that diploidy provides a novel means of immune evasion for diploid pathogens.


Clinical and molecular aspects of malaria fever

July 2011

·

88 Reads

·

83 Citations

Trends in Parasitology

Although clinically benign, malaria fever is thought to have significant relevance in terms of parasite growth and survival and its virulence which in turn may alter the clinical course of illness. In this article, the historical literature is reviewed, providing some evolutionary perspective on the genesis and biological relevance of malaria fever, and the available molecular data on the febrile-temperature-inducible parasite factors that may contribute towards the regulation of parasite density and alteration of virulence in the host is also discussed. The potential molecular mechanisms that could be responsible for the induction and regulation of cyclical malaria fevers caused by different species of Plasmodium are also discussed.


Citations (62)


... All of these biochemical processes are critical for parasite survival, development, and transition from the asexual blood stages to gametocytes (4). The current antibiotics for the treatment of malaria infection include doxycycline, azithromycin, tetracycline, and clindamycin (5). These antibiotics interfere with apicoplast function and result in the slow killing of parasites termed "delayed death." ...

Reference:

In Vitro Antimalarial Activity of Novel Semisynthetic Nocathiacin I Antibiotics
Plasmodium Ribosomes and Opportunities for Drug Intervention
  • Citing Chapter
  • April 2014

... Cells with A-type chimeric rRNA grew normally, but S-type chimeric rRNA was lethal. Additionally, it was demonstrated that one of the S-type genes (D-type SSU) in P. yoelii, an etiological agent of rodent malaria, is essential for oocyst and sporozoite development, and disruption of this gene causes the oocyst development defect (OOD), characterized as having small oocysts and lacking infective sporozoites [83]. However, studies made on both types of rRNAs from P. berghei, another causative agent of rodent malaria, did not show structural differences in core regions of LSU rRNA molecules including GTPase sites. ...

Regulation of Plasmodium yoelii Oocyst Development by Strain- and Stage-Specific Small-Subunit rRNA

... Recently, thiazoles have been reported as antimalarial agent. Sharma et al. [8] evaluated the antimalarial potential of two water soluble derivatives of nocathiacin against asexual blood stages of P. falciparum and found that one of the derivatives inhibited parasite growth with mean 50% inhibitory concentration of 51.55 nM. Sahu et al. [9] reported the antimalarial properties of thiazole-1,3,5-triazines using inhibition of P. falciparum dihydrofolate reductase (Pf-DHFR). ...

In Vitro Antimalarial Activity of Novel Semisynthetic Nocathiacin I Antibiotics

... From the phylogenetic point of view, the current taxonomic distinction between Plasmodium and Haemoproteus genera is known to be incorrect (Chagas et al., 2017;Pacheco et al., 2018). The genera are polyphyletic and do not provide an insight into vertebrate host preference, but rather provide evidence of coevolution with their respective insect vectors (Carreno et al., 1997;Galen et al., 2018a). In accordance with that, phylogenetic relationships between Plasmodium and Haemoproteus variants recovered in our analysis ( Supplementary Fig. S1) showed extensive polyphyly between the two genera. ...

Phylogenetic analysis of haemosporinid parasites (Apicomplexa: Haemosporina) and their coevolution with vectors and intermediate hosts
  • Citing Article
  • October 1997

Archiv für Protistenkunde

... In 1996, shortly after C. quinquefasciatus is thought to have been introduced, a survey of Galaṕagos penguins (Spheniscus mendiculus) identified no positive cases of avian malaria (Miller et al., 2001). Conversely, in 2013, avian malaria was identified in Galaṕagos penguins (Palmer et al., 2013;Levin et al., 2013) and yellow warblers (Setophaga petechia) (Levin et al., 2013), proposed to have been transmitted from migratory birds to mosquitoes in the archipelago, and subsequently transmitted to endemic birds. These findings suggest that the naturalization of C. quinquefasciatus was sufficient to allow avian malaria to gain a foothold in the Galaṕagos Islands. ...

Seroprevalence of Malarial Antibodies in Galapagos Penguins (Spheniscus mendiculus)

Journal of Parasitology

... Partial regions flanking major mutations of drug resistance marker genes, including Pvmdr1, Pvdhfr, and Pvdhps were amplified by nested PCR using primer sets from previous studies ( Table 1) [48][49][50]. The reactions were performed in a total volume of 20 μl containing 1× PCR buffer, 1.5 mM MgCl 2 , 1 U Taq DNA polymerase (Vivantis, Malaysia), 0.2 mM dNTPs (Biotechrabbit, Germany), 0.2 μM each of forward and reward primers (Bio Basic Inc., Canada), and 2 μl of DNA template. ...

Anti-folate combination therapies and their effect on the development of drug resistance in Plasmodium vivax

... On the other hand, ionizing radiation affected the growth and survival of Plasmodium parasites. Oakley et al. (2013) found that γ-radiation induced the death of P. falciparum in a dose-dependent manner in vitro. The authors reported that a dose of 60 Kilorads (0.6 kGy) induced TEM abnormalities in the asexual erythrocytic-stage of P. falciparum in the form of sparse cytoplasm, fewer ribosomes, disorganized and clumped organelles and large vacuoles, observations consistent with distressed or dying parasites. ...

Radiation Induced Cellular and Molecular Alterations in Asexual Intraerythrocytic Plasmodium falciparum Parasites.

The Journal of Infectious Diseases

... Regulation of the S2 loci is also quite distinct in P. falciparum. Under standard culture at 37 • C, these loci are only weakly expressed but their expression increases rapidly if parasites are exposed to the same temperatures experienced in the mosquito [14][15][16]. ...

The Effects of Glucose Concentration on the Reciprocal Regulation of rRNA Promoters in Plasmodium falciparum

Journal of Biological Chemistry

... The infection affects over 200 million people worldwide (WHO 2016). The multicellular nature of the Schistosoma parasite along with its complex life cycle impede the development of an efficient protective immune response (Xu et al. 2012). Previous studies have recorded the role of (NO)-mediated cytotoxicity in eliminating lung-stage schistosomula in vaccinated mice Wynn et al. 1994). ...

Having a pair: The key to immune evasion for the diploid pathogen Schistosoma japonicum

... Fusarium pallidoroseum also produces other peptide antibiotics which showed anti-malarial activities such as • Takaokamycin (Otoguro et al. 2003) • Enniatins (Nilanonta et al. 2003) • Leucinostatin, efrapeptins and peptaibols (Nagaraj et al. 2001) Streptomyces azureus produces thiostrepton that is found to be effective against infection with Plasmodium berghei in mice. It inhibits protein synthesis by interacting with the GTPase binding domain of the apicoplast large subunit rRNA and Sullivan et al. (2000). ...

Effects of interruption of apicoplast function on malaria infection, development, and transmission
  • Citing Article
  • July 2000

Molecular and Biochemical Parasitology