Theo Heller’s research while affiliated with National Institutes of Health and other places

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Publications (432)


Listen to Patient’s Gut. A Case Report of a Woman with Fatigue and Bruising
  • Article

June 2025

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2 Reads

Gastro Hep Advances

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Nadera Altork

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Theo Heller

Phase 1/2 Study of High-Dose Palifermin for GVHD Prophylaxis in Patients Undergoing HLA-Matched Unrelated Donor HCT

May 2025

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4 Reads

Blood

Graft-versus-host disease (GVHD) is a major complication of allogeneic hematopoietic cell transplantation (HCT). Palifermin, a recombinant N-truncated keratinocyte growth factor (KGF), protects epithelial tissues, including the thymus and gut. While high-dose KGF prevents GVHD in preclinical models, lower doses of palifermin were ineffective in humans. We conducted a phase 1/2 trial evaluating high-dose palifermin for preventing severe chronic GVHD (GVHD) in matched unrelated donor T-cell replete peripheral-blood HCT following reduced-intensity conditioning (RIC). Using a 3+3 design, we determined the recommended phase 2 dose (RP2D), followed by an expansion phase. Palifermin (180-720 μg/kg) was given on day −7 before HCT. All 31 patients received fludarabine/cyclophosphamide RIC with tacrolimus, methotrexate, and sirolimus for GVHD prophylaxis. Palifermin was well tolerated, with self-limiting rash and pancreatic enzyme elevations as notable grade 3/4 adverse events. The RP2D was 720 μg/kg. Remarkably, no patients at this dose developed grade II-IV acute GVHD (0/19), though severe chronic GVHD rates (primary endpoint) remained unchanged compared to historical controls. Post-transplant lymphocyte phenotyping suggests palifermin modulates Treg and naïve CD4+ T-cell numbers. These findings indicate high-dose palifermin with RIC is safe and may prevent acute GVHD, though it did not impact chronic GVHD rates in this study. NCT02356159



Spatial Analysis of Hereditary Diffuse Gastric Cancer Reveals Indolent Phenotype of Signet Ring Cell Precursors

April 2025

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38 Reads

Germline CDH1 loss-of-function mutations are causally linked to an increased lifetime risk of diffuse gastric cancer (DGC). Early, multifocal signet ring cell (SRC) lesions are ubiquitous among CDH1 variant carriers, yet only a subset of patients will develop advanced DGC. A multiomic analysis was performed to establish the molecular phenotype of early SRC lesions and how they differ from advanced DGC using 20 samples from human total gastrectomy specimens of germline CDH1 variant carriers. Spatial transcriptomic analysis demonstrated reduced CDH1 gene expression and increased expression of extracellular matrix remodeling in SRC lesions compared with unaffected adjacent gastric epithelium. Single-cell RNA sequencing revealed an SRC-enriched signature with markers REG1A, VIM, AQP5, PRR4, MUC6, and AGR2. Importantly, SRC lesions lacked alterations in known drivers of gastric cancer (TP53, ARID1A, and KRAS) and activation of associated signal transduction pathways. Advanced DGC demonstrated E-cadherin reexpression, somatic TP53 and ERBB3 mutations, and upregulated CTNNA1, MYC, and MET expression when compared with SRC lesions. Implications: The marked differences in the genomic and transcriptomic profiles of SRC lesions and advanced DGC support the consideration of SRC lesions as precancers in patients with germline CDH1 mutations.


Portal sinusoidal vascular diseases: Assessment and therapy

April 2025

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25 Reads

Hepatology

The term porto-sinusoidal vascular disease (PSVD) was introduced in 2019 to describe a group of liver conditions that can lead to portal hypertension (PH) in the absence of cirrhosis or portal vein thrombosis, with or without specific findings on liver histology. The new nomenclature has facilitated the consolidation of knowledge on diseases previously referred to by various terms, including Banti’s disease, non-cirrhotic portal hypertension, non-cirrhotic portal fibrosis, and idiopathic portal hypertension, while excluding certain etiologies like sarcoidosis, congenital hepatic fibrosis, and Budd-Chiari syndrome. The prevalence and recognition of the disorder has been increasing. Advances in diagnostics and treatment have improved life expectancy for patients with associated conditions, such as immunodeficiencies and autoimmune diseases. Similar to cirrhosis, patients with PSVD may experience complications of PH, including variceal bleeding and ascites. However, less is known about its natural history, screening strategies, prognosis, and treatment options. This review discusses methods for assessing PSVD, including clinical and histological features, imaging techniques, and currently available treatments. It also addresses the challenges posed by the new nomenclature and the remaining questions in disease assessment.


Correction: The intestinal microbiome and metabolome discern disease severity in cytotoxic T-lymphocyte-associated protein 4 deficiency
  • Article
  • Full-text available

March 2025

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26 Reads

Download


Impact of CTLA4 deficiency on intestinal microbiome signatures. Data for the National Institutes of Health (NIH) Clinical Center and Center for Chronic Immunodeficiency of the Medical Center of the Faculty of Medicine of Freiburg Treatment Consortium (CCI) cohorts are designated by 1 and 2, respectively. Microbiome analyses comparing healthy subjects with patients with CTLA4 deficiency (CTLA4) are shown (NIH cohort: healthy n = 16; CTLA4 n = 32 and CCI cohort: healthy n = 23; CTLA4 n = 23). Alpha diversity measures (Chao1, Shannon, and Fisher) with line and whiskers in the box plot representing the median and inter-quartile range, respectively (A1, A2). Principal coordinates analysis (PCoA) plot of beta diversity based on unweighted UniFrac distances for the two comparison groups with p-values determined by analysis of similarities (ANOSIM) (B1, B2). Heat tree depicting the significant differential abundances of bacterial genera between CTLA4 and healthy (red = higher abundance; blue or teal = lower abundance) (C1 and C2). Linear discriminant analysis (LDA) score determined by the LDA effect size (LEfSe) analysis showing the defining genera (D1, D2) and species (E1, E2) for each cohort. p-values are provided for each comparison with p < 0.05 considered as significant
Distinct intestinal microbiome changes associated with CTLA4 deficiency disease severity in the NIH cohort. Comparisons between healthy individuals and patients with different classifications of CTLA4 deficiency based on disease severity are presented for the NIH cohort (healthy n = 16, mild n = 7, severe without gastrointestinal illness [severe no GI] n = 6, severe with GI illness [severe GI] n = 19). A Relative abundance of phyla. B Alpha diversity analyses (*p < 0.05, **p < 0.01). C Principal coordinates analysis (PCoA) plot of beta diversity based on the Bray-Curtis metric with p-values determined by analysis of similarities (ANOSIM; p = 0.029). D Heat tree depicting the significant differential abundance (p< 0.05) of bacterial genera between severe GI and severe no GI groups (red = higher abundance; blue = lower abundance). Linear discriminant analysis (LDA) score determined by the LDA effect size (LEfSe) analysis showing biomarkers at genus (E) and species (F) levels
Distinct intestinal microbiome changes associated with CTLA4 deficiency disease severity in the CCI Cohort. Comparisons between healthy individuals and patients with different classifications of CTLA4 deficiency based on disease severity are presented for the CCI cohort (healthy n = 23, mild n = 9, severe without gastrointestinal illness [severe no GI] n = 4, severe with GI illness [severe GI] n = 10). A Relative abundance of phyla. B Alpha diversity analyses (*p < 0.05,**p < 0.01, ***p < 0.001). C Principal coordinates analysis (PCoA) plot of beta diversity based on the Bray-Curtis metric with p-values determined by analysis of similarities (ANOSIM; p = 0.001). D Heat tree depicting the significant differential abundance (p < 0.05) of bacterial genera between severe GI and severe no GI groups (red = higher abundance; blue = lower abundance). Linear discriminant analysis (LDA) score determined by the LDA effect size (LEfSe) analysis showing biomarkers at genus (E) and species (F) levels
Microbial biomarkers that distinguish CTLA4 deficiency from another inborn error of immunity. Comparisons between healthy (WT) individuals, patients with CTLA4 deficiency (CTLA4), and patients with common variable immunodeficiency (CVID) (C) from the CCI cohort (healthy n = 23, CTLA4-D n = 23, CVID n = 20) are shown. A Principal coordinates analysis (PCoA) plot of beta diversity based on the Bray–Curtis metric with p-values determined by analysis of similarities (ANOSIM). B Random forest plots highlighting microbial biomarkers at the genus level (red = high abundance, blue = low abundance). C Relative abundance of phyla. D Venn diagram of differentially abundant genera between comparison groups (genera are listed in Supplementary Table S4). E Genera that are distinct in CTLA4 deficiency. F Log-transformed counts of bacterial genera that are potential biomarkers of CTLA4 deficiency
Metabolomic changes in CTLA4 deficiency. Heatmap (A), principal coordinates analysis (PCoA) plot (B), and volcano plot (C) of the metabolomic profiles distinguishing healthy individuals (n = 16) from patients with CTLA4 deficiency (CTLA4, n = 25). In the heatmap, rows display metabolites, and columns represent samples (blue = decreased, red = increased). The brightness of each color corresponds to the magnitude of the difference when compared with average values. The lines in the volcano plots indicate the significance cutoff for p-value (-log10 p-value of 1.3013 corresponding to p < 0.05) and fold change (FC) (log2FC > 2, log2FC < −2). All significantly different metabolites are shown. D Random forest plots highlighting metabolic biomarkers (red = high intensities, blue = low intensities). E Box-whisker plots showing metabolite levels with their area under the curve (AUC) for the receiver operating characteristics (ROC) analysis. F Impacted pathways with their respective -log10p-values. The size of the bubble is proportional to the size of the p-value (the larger the size, the higher the significance). G ROC curves are shown for the individual biomarkers along with the AUC value and 95% confidence interval. H Distribution of individual values is shown in a box-whisker plot. I Enrichment ratio is shown for significant metabolic pathways (top) and associated disease databases (bottom) according to CTLA4 deficiency disease severity. p-values are indicated wherever required, and p < 0.05 is considered significant

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The intestinal microbiome and metabolome discern disease severity in cytotoxic T-lymphocyte-associated protein 4 deficiency

February 2025

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55 Reads

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2 Citations

Background Cytotoxic T-lymphocyte-associated protein 4 deficiency (CTLA4-D) is an inborn error of immunity (IEI) caused by heterozygous mutations, and characterized by immune cell infiltration into the gut and other organs, leading to intestinal disease, immune dysregulation and autoimmunity. While regulatory T-cell dysfunction remains central to CTLA4-D immunopathogenesis, mechanisms driving disease severity and intestinal pathology are unknown but likely involve intestinal dysbiosis. We determined whether the intestinal microbiome and metabolome could distinguish individuals with severe CTLA4-D and identify biomarkers of disease severity. Results The genera Veillonella and Streptococcus emerged as biomarkers that distinguished CTLA4-D from healthy cohorts from both the National Institutes of Health (NIH) Clinical Center, USA (NIH; CTLA-D, n = 32; healthy controls, n = 16), and a geographically distinct cohort from the Center for Chronic Immunodeficiency (CCI) of the Medical Center - University of Freiburg, Germany (CCI; CTLA4-D, n = 25; healthy controls, n = 24). Since IEIs in general may be associated with perturbations of the microbiota, a disease control cohort of individuals with common variable immunodeficiency (CVID, n = 20) was included to evaluate for a CTLA4-D-specific microbial signature. Despite common IEI-associated microbiome changes, the two bacterial genera retained their specificity as biomarkers for CTLA4-D. We further identified intestinal microbiome and metabolomic signatures that distinguished patients with CTLA4-D having severe vs. mild disease. Microbiome changes were associated with distinct stool metabolomic profiles and predicted changes in metabolic pathways. These differences were impacted by the presence of gastrointestinal manifestations and were partially reversed by treatment with abatacept and/or sirolimus. Conclusions Loss of intestinal microbial diversity and dysbiosis causing metabolomic changes was observed in CTLA4-D. Albeit some of these features were shared with CVID, the distinct changes associated with CTLA4-D highlight the fact that IEI-associated microbiome changes likely reflect the underlying immune dysregulation. Identified candidate intestinal microbial and metabolic biomarkers distinguishing individuals with CTLA4-D based on severity should be studied prospectively to determine their predictive value, and investigated as potential therapeutic targets. 5D3rs3jgvo7MqmP_TFVE2KVideo Abstract


Adolescents and Young Adults with Germline CDH1 Variants and the Risk of Overtreatment

January 2025

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6 Reads

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4 Citations

JNCI Journal of the National Cancer Institute

Background Adolescents and young adults (AYA) with germline CDH1 variants are at risk of overtreatment when precancer lesions are detected with endoscopic screening. We characterize diffuse-type gastric cancer prevalence and survival in AYA managed with prophylactic total gastrectomy (PTG) or endoscopic surveillance. Methods Prospective cohort study of 188 individuals aged 39 and younger enrolled from January 27, 2017, to May 1, 2023. Clinicopathologic data, prevalence of early gastric signet ring cell (SRC) lesions, advanced gastric cancer diagnoses, and cancer-specific survival were measured. Results Among 188 AYA patients, 104 chose surveillance and 67 pursued PTG for management of elevated gastric cancer risk. AYA who enrolled early in the study period and had SRC lesions detected on preoperative endoscopy were more likely to elect for PTG compared to surveillance. SRC were detected on preoperative endoscopy in 48% of patients who subsequently had PTG, yet nearly all (93%, 62/67) had multifocal SRC (pT1aN0) on final pathology. Median age at enrollment (30 vs. 31 years, p = .21), biologic sex (p = .17), and median number of family members with gastric cancer (3 vs. 4, p = .14) were not different between groups. No patients under surveillance developed advanced cancer or developed cancer recurrence after PTG with a median follow-up of 2.5 years (IQR 1.6-4.0) from initial endoscopy. Conclusions Cancer-specific outcomes were not different in AYA who harbored SRC and were managed with surveillance or PTG. Lack of cancer-specific deaths and low prevalence of advanced gastric cancer underscore the risk of overtreatment of SRC lesions and suggest that active surveillance is warranted.


Lessons learned from 150 total gastrectomies for prevention of cancer

November 2024

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28 Reads

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3 Citations

Journal of Gastrointestinal Surgery

Background Prophylactic total gastrectomy (PTG) is performed in carriers of CDH1 pathogenic and likely pathogenic (P/LP) variants and is becoming more frequent with broader use of germline genetic testing. There is an unmet need to standardize care and enhance outcomes among patients undergoing surgery for the prevention of gastric cancer. Methods This was a retrospective analysis of 150 individuals with germline CDH1 P/LP variants who underwent PTG as part of a prospective natural history study from October 2017 to May 2023. All individuals received multidisciplinary, protocolized care before and after total gastrectomy. Results A total of 150 asymptomatic patients with germline CDH1 P/LP variants underwent PTG with the aid of a multidisciplinary enhanced recovery after surgery (ERAS) pathway. This study demonstrated that acute major morbidity (Clavien-Dindo grade of ≥3) was low (17/150 [11.3%]) and that the most common complication was anastomotic leak (11/150 [7.3%]) in the setting of a comprehensive preoperative and postoperative care pathway. Nearly all gastrectomy specimens (132/150 [88.0%]) harbored occult signet ring cell lesions on final pathology. There were no gastric cancer recurrences or gastric cancer-related deaths during the study period, with a median overall follow-up of 36 months (IQR, 24–48) from gastrectomy. Conclusion PTG can be performed with low surgical morbidity in a high-volume center. The delivery of patient-centered care by a multidisciplinary team and the application of an ERAS pathway may improve short-term outcomes. However, interventions that can reduce chronic morbidity associated with total gastrectomy warrant further study.


Citations (43)


... In addition, studies have shown that parasitic infestations not only directly affect the gut microbiota but also may indirectly impact the microbiota by altering the host's immune response. For example, certain immunodeficiency diseases (such as CTLA4-D) are associated with specific changes in the gut microbiota [42], which further illustrates the complex interaction between host immune status and gut microbiota. In summary, although PCoA did not detect significant differences in our study, future research is expected to more comprehensively reveal the impact of parasitic infestations on the gut microbiota by combining other statistical methods and more sample data. ...

Reference:

Effects of Different Levels of Flea Infestation on Gut Microbiota of Brandt’s Voles (Lasiopodomys brandtii) in China
The intestinal microbiome and metabolome discern disease severity in cytotoxic T-lymphocyte-associated protein 4 deficiency

... TP53 is one of the most frequently mutated genes, with its alterations typically associated with tumor progression, increased invasiveness, and poor prognosis [22,23]. CDH1 mutations play a critical role in HDGC, representing a core pathogenic driver [24,25]. Additionally, ARID1A mutations are closely linked to tumor immune evasion and alterations in the tumor microenvironment [26]. ...

Adolescents and Young Adults with Germline CDH1 Variants and the Risk of Overtreatment
  • Citing Article
  • January 2025

JNCI Journal of the National Cancer Institute

... Patient referral to a registered dietitian experienced with postgastrectomy nutritional requirements for guidance before and after TG is strongly recommended [2,7,10]. Dietitians and healthcare providers alike must emphasize the need for lifelong multivitamin supplementation in individuals who undergo TG and review appropriate supplementation with each patient. ...

Lessons learned from 150 total gastrectomies for prevention of cancer

Journal of Gastrointestinal Surgery

... Genome sequencing is crucial for detecting variants in noncoding regions, but techniques like ChIP-seq, ATAC-seq, RNA-seq, Fiber-seq and Massively Parallel Reporter Assays can help identify and provide mechanistic explanation for potential pathogenic noncoding variation. For example, noncoding variants such as deep intronic variants may be involved in alterations in splicing, where exons or introns may be incorrectly skipped or included during mRNA processing leading to changes in the final transcript potentially leading to clinical phenotypes175 . While these variants are often visible in primary DNA sequencing, their interpretation is typically speculative without orthogonal validation such as RT-PCR, RNA sequencing, or mini-gene splicing assays to validate whether or not aberrant splicing occurred by understanding the sequence of the processed mRNA. ...

A deep intronic splice-altering AIRE variant causes APECED syndrome through antisense oligonucleotide-targetable pseudoexon inclusion
  • Citing Article
  • September 2024

Science Translational Medicine

... Other liver disorders, such as alcoholic liver cirrhosis and hepatitis C, also exhibited increased levels of serum taurine-conjugated bile acids. [49,50] In hepatitis C patients, an increase in taurine-conjugated bile acids was linked to increases in the G-proteincoupled bile acid receptor S1PR2 and inflammation. [50] Fatty liver is often associated with WD, but the unique amino acid conjugation findings in WD:Liver group suggest that changes in bile acid conjugation have specific copper-driven changes in bile acid metabolism. ...

Taurine-conjugated bile acids and their link to hepatic S1PR2 play a significant role in hepatitis C-related liver disease
  • Citing Article
  • July 2024

Hepatology Communications

... However, as a detrimental effect, these C. albicans-induced T H 17 cells can cross-react with other fungi, including Aspergillus fumigatus, promoting airway inflammation, especially during acute allergic bronchopulmonary aspergillosis 156 Similarly, C. albicans can induce a cytotoxic T H 1 cell phenotype and selective expansion of T cell clones that cross-react with several commensal and food-derived yeasts in patients with Crohn's disease 157 . Although type 17 responses are critically important in promoting protection against mucosal candidiasis, defective type 1 immunity can also drive susceptibility to Candida infections in primary immune deficiencies, such as autoimmune polyglandular syndrome type 1 (APS-1) caused by variants in the AIRE (autoimmune regulator) gene 158,159 . Mice and humans with AIRE deficiency are selectively susceptible to mucosal (but not systemic) candidiasis, resulting from enhanced mucosal interferon-γ (IFNγ) production and STAT1 activation leading to barrier defects. ...

The Role of Interferon-γ in Autoimmune Polyendocrine Syndrome Type 1
  • Citing Article
  • May 2024

The New-England Medical Review and Journal

... We thank Üçdal et al. for their interest and comments on our research. 1 Üçdal et al. raised a concern that non-cirrhotic portal hypertension (NCPH) and porto-sinusoidal vascular disease (PSVD) were not distinguished in the paper and subtypes of NCPH were not addressed, such as idiopathic NCPH and extrahepatic portal vein obstruction. To describe the cohort, we used the criteria from the original article by De Gottardi et al. 2 We used 'NCPH' as an umbrella term as it encompasses the full spectrum of liver diseases in the cohort: PSVD and diseases excluded from PSVD definition but causing portal hypertension (PH) without cirrhosis, such as sarcoidosis, Budd-Chiari and congenital hepatic fibrosis. ...

Prospective evaluation of patients with non‐cirrhotic portal hypertension: A single centre study

... Recently, the presence of hepatitis delta RNA in extracellular vesicles was reported [23], but their involvement in HDV transmission was not assessed. Hepatitis delta is a severe form of chronic viral hepatitis [24], affecting between 12 and 72 million people worldwide [25][26][27]. It is caused by the hepatitis delta virus (HDV), a defective virus that needs the envelope protein from the HBV to form mature infectious virions [24]. ...

HDV: Epidemiology, lifecycle, testing, and treatment
  • Citing Article
  • April 2024

Clinical Liver Disease

... a Given the central role of identifying and managing AUD in patients with MetALD and ALD, basic AUD management should be an integrated part of the training curriculum for hepatologists in the future. Screening for unhealthy alcohol use should be part of any initial hepatologist consultation in patients with MetALD and ALD, as the hepatologist consultation might improve outcomes in itself 133 . ...

Hepatology consultation is associated with decreased early return to alcohol use after discharge from an inpatient alcohol use disorder treatment program
  • Citing Article
  • April 2024

Hepatology Communications

... Although TB was the most common cause of GLD in our study, consistent with previous studies from Eastern countries, its prevalence was lower than the reported rates in the Middle East and India (42.6%-88.9%). 19 In contrast, this finding differs significantly from Western studies, which have shown that non-infectious causes such as sarcoidosis and primary biliary cholangitis are predominant. [20][21][22] In our study, we observed only one case of sarcoidosis and three cases of autoimmune hepatitis-primary biliary cholangitis overlap syndrome. ...

Granulomatous liver diseases

Hepatology Communications