Susumu Tonegawa’s research while affiliated with Massachusetts Institute of Technology and other places

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Publications (308)


Fig. 1. Anterograde and retrograde tracing of VTA dopaminergic neurons to BLA. (A) Schematic of AAV9-DIO-ChR2-EYFP injection into VTA of DAT-IRES-Cre mice. (B) Left, representative image of ChR2-EYFP expression in the VTA, TH in red. Right, confocal images of anterograde EYFP-expressing fibers (green, Left Top and Bottom) through the medial-lateral axis of the BLA (red, Middle-Top Ppp1rb1 − and Middle-Bottom Ppp1rb1 + subregions; overlap on Right Top-Bottom panels, blue DAPI). (C) Quantification of mean pixel intensity in the LA, aBLA, and pBLA in arbitrary units (N = 3 replicate mice, n = 18 sections per region; One-way ANOVA, ***P < 0.001). (D) Schematic of helper and rabies virus injection into aBLA of Rspo2-Cre mice. (E) Representative confocal images of rabies-mediated retrograde tracing from BLA Rspo2 + neurons to VTA dopaminergic neurons (Inset: I = TH + and II = TH − neurons projecting to Rspo2 + neurons). (F) Schematic of helper and rabies virus injection into pBLA of Ppp1rb1-Cre mice. (G) Representative confocal images of rabies-mediated retrograde tracing from pBLA Ppp1r1b + neurons to VTA dopaminergic neurons (Inset: I = TH + and II = TH − neurons projecting to Ppp1r1b + neurons). (H) Bilateral rostro-caudal distribution of VTA dopaminergic cells projecting to Rspo2 + (green, n = 208 cells) or Ppp1r1b + (red, n = 101 cells) neurons (χ 2 < 0.0001, Rspo2-Cre mice N = 4, Ppp1r1b-Cre mice: N = 3, injections in the right hemisphere).
Fig. 2. Quantification of D1 and D2 dopamine receptor expression in the BLA. (A) Double smFISH of Drd1 (green) and Drd2 (red) in BLA along the AP axis. (B) Fourplex smFISH of Drd1 (white) and Drd2 (yellow), Rspo2 (green, and green dotted line) and Ppp1rb1 (red, and red dotted line) in BLA. (C) Left: high magnification images showing colocalization of neurons containing both Drd1 and Rspo2 or Ppp1r1b mRNA in BLA. Right: normalized count of double positive cells (Rspo2-Drd1 green, and Ppp1r1b-Drd1 red) plotted as a function of the Drd1 mRNA fluorescence intensity. Rspo2 cells: n = 272; Ppp1r1b cells: n = 325. Unpaired t test, P = 2.5*10^6.
Fig. 4. Bidirectional control of fear extinction by optogenetic manipulation of VTA Dopaminergic projection to pBLA or aBLA. (A) Experimental protocol of optogenetic manipulation during fear extinction training. (B) Confocal images showing fiber optic placement and ChR2-YFP + or NpHR3.0-EYFP + DA axons in anterior and pBLA in relation to schematics (C, E, G, and I), respectively. (C) Schematic of AAV-DIO-ChR2-EYFP injection into VTA and optical fiber implant targeting pBLA of DAT-IRES-Cre mice. (D) Optogenetic activation of VTA dopaminergic projections to pBLA facilitated fear extinction learning and fear extinction memory. EYFP group n = 9; ChR2 group n = 10. Day1 and Day 2: Two-way RM ANOVA; Day 3: Unpaired t test. (E) Schematic of AAV-DIO-NpHR3.0-EYFP injection into VTA and optical fiber implant targeting pBLA of DAT-IRES-Cre mice. (F) Optogenetic inhibition of VTA dopaminergic projections to pBLA impaired fear extinction learning and fear extinction memory. EYFP group n = 11; NpHR group n = 10. Day 1 and Day 2: Two-way RM ANOVA; Day 3: Unpaired t test. (G) Schematic of AAV-DIOChR2-EYFP injection into VTA and optical fiber implant targeting aBLA of DAT-IRES-Cre mice. (H) Optogenetic activation of VTA dopaminergic projections to aBLA suppressed fear extinction learning and fear extinction memory. EYFP group n = 8; ChR2 group n = 8. Day 1 and Day 2: Two-way RM ANOVA; Day 3: Unpaired t test. (I) Schematic of AAV-DIO-NpHR3.0-EYFP injection into VTA and optical fiber implant targeting aBLA of DAT-IRES-Cre mice. (J) Optogenetic inhibition of VTA dopaminergic projections to aBLA did not affect fear extinction behavior. EYFP group n = 9; NpHR group n = 8. Day 1 and Day 2: Two-way RM ANOVA; Day 3: Unpaired t test. Data are presented as mean ± SEM. *P < 0.05, **P <0.01, ***P <0.001, ****P <0.0001.
Fig. 6. Role of VTA DA innervation to Rspo + and Ppp1r1b + BLA neurons during fear conditioning and fear extinction. (A) Schematic model of the circuit activity in relation to fear conditioning and fear extinction. During fear conditioning (Left, Top to Bottom), the US (electric shock, red) causes DA release on both Rspo2 + (red) and Ppp1r1b + (blue) BLA neurons engaged in a competitive inhibitory antagonism. The DA release is larger on Rspo2 + BLA neurons, which in turn inhibit Ppp1r1b + BLA neurons promoting freezing. During fear extinction (Right, Top to Bottom), the lack of US causes DA release mainly on Ppp1r1b + BLA neurons, which in turn inhibit Rspo2 + BLA neurons promoting freezing cessation.
Dopamine induces fear extinction by activating the reward-responding amygdala neurons
  • Article
  • Full-text available

April 2025

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14 Reads

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1 Citation

Proceedings of the National Academy of Sciences

Xiangyu Zhang

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Katelyn Flick

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Marianna Rizzo

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[...]

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Susumu Tonegawa

The extinction of conditioned fear responses is crucial for adaptive behavior, and its impairment is a hallmark of anxiety disorders such as posttraumatic stress disorder. Fear extinction takes place when animals form a new memory that suppresses the original fear memory. In the case of context-dependent fear memory, the new memory is formed within the reward-responding posterior subset of basolateral amygdala (BLA) that is genetically marked by Ppp1r1b ⁺ neurons. These memory engram cells suppress the activity of the original fear-responding Rspo2 ⁺ engram cells present in the anterior BLA, hence fear extinction. However, the neurological nature of the teaching signal that instructs the formation of fear extinction memory in the Ppp1r1b ⁺ neurons is unknown. Here, we demonstrate that ventral tegmental area (VTA) dopaminergic signaling drives fear extinction in distinct BLA neuronal populations. We show that BLA fear and extinction neuronal populations receive topographically divergent inputs from VTA dopaminergic neurons via differentially expressed dopamine receptors. Fiber photometry recordings of dopaminergic activity in the BLA reveal that dopamine (DA) activity is time-locked to freezing cessation in BLA fear extinction neurons, but not BLA fear neurons. Furthermore, this dopaminergic activity in BLA fear extinction neurons correlates with extinction learning. Finally, using projection-specific optogenetic manipulation, we find that activation of the VTA DA projections to BLA reward and fear neurons accelerated or impaired fear extinction, respectively. Together, this work demonstrates that dopaminergic activity bidirectionally controls fear extinction by distinct patterns of activity at BLA fear and extinction neurons.

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Importance of diagnostic methods for round ligament leiomyomas in clinical practice

November 2022

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3 Reads

Benign uterine leiomyoma (U.LMA) and malignant uterine leiomyosarcoma (U.LMS), which are both uterine mesenchymal tumors, are distinguished by the number of cells with mitotic activity. However, uterine mesenchymal tumors contain tumor cells with various cell morphologies; therefore, making a diagnosis, including differentiation between benign tumors and malignant tumors, is difficult. For example, round ligament leiomyomas are uterine leiomyomas with a very rare placental lobed tissue morphology that can be misdiagnosed as a malignant uterine leiomyosarcoma because of its rarity and characteristic appearance on gross examination. Similar to the detection of a suspicious malignant mass during magnetic resonance imaging (MRI) examination by medical staff, healthcare professionals must understand the characteristic appearance of round ligament leiomyomas. Clinicians and pathologists must understand the oncologic features of round ligament leiomyomas to prevent misdiagnosis of malignancy and consequent overtreatment.


Cingulate-motor circuits update rule representations for sequential choice decisions

August 2022

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160 Reads

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11 Citations

Anterior cingulate cortex mediates the flexible updating of an animal’s choice responses upon rule changes in the environment. However, how anterior cingulate cortex entrains motor cortex to reorganize rule representations and generate required motor outputs remains unclear. Here, we demonstrate that chemogenetic silencing of the terminal projections of cingulate cortical neurons in secondary motor cortex in the rat disrupts choice performance in trials immediately following rule switches, suggesting that these inputs are necessary to update rule representations for choice decisions stored in the motor cortex. Indeed, the silencing of cingulate cortex decreases rule selectivity of secondary motor cortical neurons. Furthermore, optogenetic silencing of cingulate cortical neurons that is temporally targeted to error trials immediately after rule switches exacerbates errors in the following trials. These results suggest that cingulate cortex monitors behavioral errors and updates rule representations in motor cortex, revealing a critical role for cingulate-motor circuits in adaptive choice behaviors. The anterior cingulate cortex allows an animal to update its behaviour when the environment changes. In this work, the authors identify a pathway from cingulate to secondary motor cortex, critical for updating motor rules following behavioural errors.


Brain-wide mapping reveals that engrams for a single memory are distributed across multiple brain regions

April 2022

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834 Reads

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189 Citations

Neuronal ensembles that hold specific memory (memory engrams) have been identified in the hippocampus, amygdala, or cortex. However, it has been hypothesized that engrams of a specific memory are distributed among multiple brain regions that are functionally connected, referred to as a unified engram complex. Here, we report a partial map of the engram complex for contextual fear conditioning memory by characterizing encoding activated neuronal ensembles in 247 regions using tissue phenotyping in mice. The mapping was aided by an engram index, which identified 117 cFos+ brain regions holding engrams with high probability, and brain-wide reactivation of these neuronal ensembles by recall. Optogenetic manipulation experiments revealed engram ensembles, many of which were functionally connected to hippocampal or amygdala engrams. Simultaneous chemogenetic reactivation of multiple engram ensembles conferred a greater level of memory recall than reactivation of a single engram ensemble, reflecting the natural memory recall process. Overall, our study supports the unified engram complex hypothesis for memory storage. Where memories are located in our brains is not well understood. In this paper, the authors demonstrate that memories are spread out throughout multiple brain regions.



Cingulate-motor circuits update rule representations for sequential choice decisions

May 2021

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65 Reads

Anterior cingulate cortex mediates the flexible updating of an animal's choice responses upon rule changes in the environment. However, how anterior cingulate cortex entrains motor cortex to reorganize rule representations and generate required motor outputs remains unclear. Here, we demonstrate that chemogenetic silencing of the projection terminals of cingulate cortical neurons in secondary motor cortex disrupted sequential choice performance in trials immediately following rule switches, suggesting that these inputs are necessary to update rule representations for choice decisions stored in the motor cortex. Indeed, the silencing of cingulate cortex decreased rule selectivity of secondary motor cortical neurons. Furthermore, optogenetic silencing of cingulate cortical neurons that was temporally targeted to error trials immediately after rule switches exacerbated errors in following trials. These results suggest that cingulate cortex monitors behavioral errors and update rule representations in motor cortex, revealing a critical role for cingulate-motor circuits in adaptive choice behaviors.


Citations (73)


... However, other researchers reported lower sensitivities, at 48% and 53% [63][64][65]. To better understand this issue, larger research studies with a greater number of women are required. ...

Reference:

The Impact of Adenomyosis on Pregnancy
Importance of diagnostic methods for round ligament leiomyomas in clinical practice

Quantitative Imaging in Medicine and Surgery

... The symptoms of uterine leiomyosarcoma are irregular vaginal bleeding, lower abdominal pain, pelvic pain, and pelvic mass. Tumor rupture and metastatic lesions in distant organs are observed in the early stages of the disease (8). It is common for uterine leiomyosarcomas to adhere to the gastrointestinal tract and bladder. ...

Potential biomarkers associated with malignancy in uterine mesenchymal tumors
  • Citing Article
  • January 2021

... Recent studies suggest that dynamic transcriptional signatures play important roles in regulating CREB-Fos regulation, but the underlying temporal logic remains unclear [40][41][42] . Using CytoTape, we observed that CREB activation and Fos expression can become decoupled in cells exhibiting active Fos transcriptional activity prior to stimulation, suggesting a potential role for transcriptional history in shaping downstream responses [43][44][45] . In primary cultured neurons, we also observed that Arc-and Egr1promoter-driven gene expression display complex, multi-peak activation dynamics following a single upstream stimulation, revealing distinct temporal couplings dependent on stimulus type. ...

Brain-wide mapping reveals that engrams for a single memory are distributed across multiple brain regions

... Our task additionally enabled direct comparison between human and animal neuronal responses to time, revealing broadly conserved qualities across species. Specifically, we find that human time cells (1) span entire event durations 7,8,20 ; (2) accumulate error in the absence of external cues 26-28 ; (3) remap between events for which context discrimination (here gold searching versus digging) is behaviorally adaptive 7,8,20,27 ; (4) are encoded independently of place 10,[33][34][35] ; and (5) reside in the MTL 7,28,36-41 and mPFC. 42,43 Consistent with the original time cell study in rodents, 7 we also found an inverse correlation between population firing rates during delay and navigation intervals, denoting sharp contextual boundaries between these states. ...

Crucial role for CA2 inputs in the sequential organization of CA1 time cells supporting memory
  • Citing Article
  • January 2021

Proceedings of the National Academy of Sciences

... The ECN comprises lateral prefrontal and parietal regions and supports executive functions such as working memory, selective attention, and cognitive control [46]. Animal and human studies suggest that enhanced functional coupling of the LCC with the ECN is associated with increased goal-directed attention and decreased impulsivity [47,48]. ...

Differential attentional control mechanisms by two distinct noradrenergic coeruleo-frontal cortical pathways
  • Citing Article
  • November 2020

Proceedings of the National Academy of Sciences

... As a result, caveolin 1, cyclin B, cyclin E, Ki-67/MIB1, and LMP2/β1i were identified as biomarker candidate factors specifically expressed in uLMS. A differential diagnostic method with IHC staining using a combination of several monoclonal antibodies against LMP2/β1i and other candidate cellular factors, such as caveolin 1, cyclin B, cyclin E, Ki-67/MIB1, and CD44, has been investigated for uterine mesenchymal tumors, including uLMS (Table 1) [18,19]. Staining score of LMP2/β1i expression, CALPONIN h1 expression and CD44 expression from results of IHC experiments. ...

A potential diagnostic biomarker: Proteasome LMP2/b1i-differential expression in human uterus neoplasm

Nature Precedings

... ; focal+: focal-positive (focal or sporadic staining with less than 5% of cells stained); ++: staining with 5% or more, less than 90% of cells stained; +++: diffuse-positive (homogenecus distribution with more than 90% of cells stained); −: negative (no stained cells). U.LANT-like tumor: uterine leiomyomatoid angiomatous neuroendocrine tumor-like tumor, LMP2 [14,15], cyclin E [14,15], caveolin1 [15] NT5DC2 [16,17], CD133 [16] Ki-67 [14,15]. STUMP (smooth muscle tumor of uncertain malignant potential) [16,18]. ...

Candidate molecules as diagnostic biomarker for human uterine mesenchymal tumors

Annals of Cytology and Pathology

... Unlike the 1-back choice weight, the 2-back choice weight did not depend on previous exposure to temporal regularities ( Supplementary Fig. 4). Lastly, choice repetition was also modulated by the previous trial's stimulus contrast, being more pronounced after successful choices based on low-rather than high contrast stimuli (t(9) = 4.38, p = 0.002, two-sided paired t-test; Fig. 2h), similar to previous studies 9,21,32 . This modulation by past stimulus contrasts gradually decayed over n-back trials ( Supplementary Fig. 5). ...

Reinforcement biases subsequent perceptual decisions when confidence is low, a widespread behavioral phenomenon

... Several studies support the involvement of metacognitive confidence in decision-making in non-human primates and rodents 84,91,105,[114][115][116][117][118][119] . More precisely, Lak and colleagues (2017) demonstrated that (which was not certified by peer review) is the author/funder. ...

Reinforcement biases subsequent perceptual decisions when confidence is low: a widespread behavioral phenomenon
  • Citing Article
  • April 2020

eLife