Sonja J Olsen’s research while affiliated with Centers for Disease Control and Prevention and other places

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Publications (232)


Patterns in prescribing and dispensing of influenza antivirals among adults with influenza presenting to urgent care and emergency department settings, VISION Network, 2023-2024
  • Article

April 2025

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11 Reads

Clinical Infectious Diseases

Katherine Adams

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Background We describe prescribing and dispensing patterns of influenza antivirals among patients with laboratory-confirmed influenza within US urgent care and emergency department settings. Methods A retrospective cross-sectional study was conducted for encounters from 4 large, integrated health systems participating in the VIrtual Sars-cov-2, Influenza, and Other respiratory viruses Network (VISION) of adult patients presenting with acute respiratory illness to urgent care or emergency departments and with positive influenza virus test results during the 2023–2024 influenza season. The analysis was restricted to adult patients at higher risk of influenza complications based on presence of underlying medical conditions, older age, pregnancy, and severe obesity. We calculated proportions and odds of prescribed and dispensed antivirals by demographic and clinical characteristics. Results A total of 10 700 patient encounters were eligible for analysis. Among encounters with a positive standard molecular influenza test result (n = 5231), 58% (range across sites: 47%–64%) were prescribed antivirals, with 67% of prescribing occurring on the encounter date. Among those prescribed antivirals (n = 3050), 80% (range across sites: 75%–91%) had them dispensed, with 65% of dispensing occurring on the prescription date. Encounters among persons aged ≥65 years had lower odds of same-day prescribing (.57; 95% CI: .42–.78) and lower odds of same-day dispensing (.58; 95% CI: .36–.94) compared with those aged 18–49 years. Conclusions Gaps in antiviral treatment within urgent care and emergency department settings remain for patients at higher risk of influenza complications, notably among older adults. Strategies to improve earlier initiation of antiviral treatment may help reduce the risk of influenza-associated complications.


Highly Pathogenic Avian Influenza A(H5N1) Virus Infections in Humans

December 2024

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26 Reads

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36 Citations

The New-England Medical Review and Journal

Background: Highly pathogenic avian influenza A(H5N1) viruses have caused widespread infections in dairy cows and poultry in the United States, with sporadic human cases. We describe characteristics of human A(H5N1) cases identified from March through October 2024 in the United States. Methods: We analyzed data from persons with laboratory-confirmed A(H5N1) virus infection using a standardized case-report form linked to laboratory results from the Centers for Disease Control and Prevention influenza A/H5 subtyping kit. Results: Of 46 case patients, 20 were exposed to infected poultry, 25 were exposed to infected or presumably infected dairy cows, and 1 had no identified exposure; that patient was hospitalized with nonrespiratory symptoms, and A(H5N1) virus infection was detected through routine surveillance. Among the 45 case patients with animal exposures, the median age was 34 years, and all had mild A(H5N1) illness; none were hospitalized, and none died. A total of 42 patients (93%) had conjunctivitis, 22 (49%) had fever, and 16 (36%) had respiratory symptoms; 15 (33%) had conjunctivitis only. The median duration of illness among 16 patients with available data was 4 days (range, 1 to 8). Most patients (87%) received oseltamivir; oseltamivir was started a median of 2 days after symptom onset. No additional cases were identified among the 97 household contacts of case patients with animal exposures. The types of personal protective equipment (PPE) that were most commonly used by workers exposed to infected animals were gloves (71%), eye protection (60%), and face masks (47%). Conclusions: In the cases identified to date, A(H5N1) viruses generally caused mild illness, mostly conjunctivitis, of short duration, predominantly in U.S. adults exposed to infected animals; most patients received prompt antiviral treatment. No evidence of human-to-human A(H5N1) transmission was identified. PPE use among occupationally exposed persons was suboptimal, which suggests that additional strategies are needed to reduce exposure risk. (Funded by the Centers for Disease Control and Prevention.).


Serologic Evidence of Recent Infection with Highly Pathogenic Avian Influenza A(H5) Virus Among Dairy Workers — Michigan and Colorado, June–August 2024

November 2024

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24 Reads

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26 Citations

MMWR. Morbidity and mortality weekly report

Since April 2024, sporadic infections with highly pathogenic avian influenza (HPAI) A(H5) viruses have been detected among dairy farm workers in the United States. To date, infections have mostly been detected through worker monitoring, and have been mild despite the possibility of more severe illness. During June-August 2024, CDC collaborated with the Michigan Department of Health and Human Services and the Colorado Department of Public Health and Environment to implement cross-sectional serologic surveys to ascertain the prevalence of recent infection with HPAI A(H5) virus among dairy workers. In both states, a convenience sample of persons who work in dairies was interviewed, and blood specimens were collected. Among 115 persons, eight (7%; 95% CI = 3.6%-13.1%) had serologic evidence of recent infection with A(H5) virus; all reported milking cows or cleaning the milking parlor. Among persons with serologic evidence of infection, four recalled being ill around the time cows were ill; symptoms began before or within a few days of A(H5) virus detections among cows. This finding supports the need to identify and implement strategies to prevent transmission among dairy cattle to reduce worker exposures and for education and outreach to dairy workers concerning prevention, symptoms, and where to seek medical care if the workers develop symptoms. Timely identification of infected herds can support rapid initiation of monitoring, testing, and treatment for human illness, including mild illness, among exposed dairy workers.


The burden of all-cause mortality following influenza-associated hospitalizations, FluSurv-NET, 2010-2019

November 2024

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19 Reads

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1 Citation

Clinical Infectious Diseases

Background While the estimated number of U.S. influenza-associated deaths is reported annually, detailed data on the epidemiology of influenza-associated deaths, including the burden of in-hospital versus post-hospital discharge deaths are limited. Methods Using data from the 2010-11 through 2018-19 seasons from the Influenza Hospitalization Surveillance Network, we linked cases to death certificates to identify patients who died from any cause during their influenza hospital stay or within 30 days post discharge. We described demographic and clinical characteristics of patients who died in hospital versus post discharge and characterized locations and causes of death (COD). Results Among 121,390 cases hospitalized with laboratory-confirmed influenza over 9 seasons, 5.5% died; 76% of deaths were in patients ≥65 years, 71% were non-Hispanic White, and 34% had ≥4 underlying medical conditions. Among all patients with an influenza-associated hospitalization who died, 48% of deaths occurred after hospital discharge; the median days from discharge to death was 9 days (IQR 3-19 days). Post-discharge deaths more often occurred in older patients and among those with underlying medical conditions. Only 37% of patients who died had “influenza” as a COD on their death certificate. Influenza was more frequently listed as a COD among persons who died in-hospital compared with cardiovascular disease among those who died after discharge. Conclusions All-cause mortality burden is substantial among patients hospitalized with influenza, with almost 50% of deaths occurring within 30 days after hospital discharge. Surveillance systems should consider capture of post-discharge outcomes to better characterize the impact of influenza on all-cause mortality.



Wastewater Surveillance for Influenza A Virus and H5 Subtype Concurrent with the Highly Pathogenic Avian Influenza A(H5N1) Virus Outbreak in Cattle and Poultry and Associated Human Cases - United States, May 12-July 13, 2024

September 2024

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29 Reads

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14 Citations

MMWR. Morbidity and mortality weekly report

As part of the response to the highly pathogenic avian influenza A(H5N1) virus outbreak in U.S. cattle and poultry and the associated human cases, CDC and partners are monitoring influenza A virus levels and detection of the H5 subtype in wastewater. Among 48 states and the District of Columbia that performed influenza A testing of wastewater during May 12-July 13, 2024, a weekly average of 309 sites in 38 states had sufficient data for analysis, and 11 sites in four states reported high levels of influenza A virus. H5 subtype testing was conducted at 203 sites in 41 states, with H5 detections at 24 sites in nine states. For each detection or high level, CDC and state and local health departments evaluated data from other influenza surveillance systems and partnered with wastewater utilities and agriculture departments to investigate potential sources. Among the four states with high influenza A virus levels detected in wastewater, three states had corresponding evidence of human influenza activity from other influenza surveillance systems. Among the 24 sites with H5 detections, 15 identified animal sources within the sewershed or adjacent county, including eight milk-processing inputs. Data from these early investigations can help health officials optimize the use of wastewater surveillance during the upcoming respiratory illness season.



Quantified impacts of non‐pharmaceutical interventions on influenza circulation during the COVID‐19 pandemic in 13 African countries, 2020–2022

January 2024

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13 Reads

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3 Citations

Nonpharmaceutical interventions (NPIs) for SARS‐CoV‐2 disrupted circulation of influenza. We used data from 13 African countries and generalized linear models to identify associations between levels of NPIs, using the Oxford Stringency Index, and seasonal influenza activity, using parameters derived from 2020–2022 seasonal influenza surveillance. We found that for each step increase in school closings, the average percentage of respiratory specimens testing positive for influenza across the influenza season dropped by 20% (95% CI: 1–38%); no other NPI was significant. These findings may inform interventions to slow influenza circulation in pandemics and possibly during seasonal epidemics.


Avian influenza A(H5) virus circulation in live bird markets in Vietnam, 2017–2022

December 2023

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38 Reads

Background Highly pathogenic avian influenza A(H5) human infections are a global concern, with many A(H5) human cases detected in Vietnam, including a case in October 2022. Using avian influenza virus surveillance from March 2017–September 2022, we described the percent of pooled samples that were positive for avian influenza A, A(H5), A(H5N1), A(H5N6), and A(H5N8) viruses in live bird markets (LBMs) in Vietnam. Methods Monthly at each LBM, 30 poultry oropharyngeal swab specimens and five environmental samples were collected. Samples were pooled in groups of five and tested for influenza A, A(H5), A(H5N1), A(H5N6), and A(H5N8) viruses by real‐time reverse‐transcription polymerase chain reaction. Trends in the percent of pooled samples that were positive for avian influenza were summarized by LBM characteristics and time and compared with the number of passively detected avian influenza outbreaks using Spearman's rank correlation. Results A total of 25,774 pooled samples were collected through active surveillance at 167 LBMs in 24 provinces; 36.9% of pooled samples were positive for influenza A, 3.6% A(H5), 1.9% A(H5N1), 1.1% A(H5N6), and 0.2% A(H5N8). Influenza A(H5) viruses were identified January–December and at least once in 91.7% of sampled provinces. In 246 A(H5) outbreaks in poultry; 20.3% were influenza A(H5N1), 60.2% A(H5N6), and 19.5% A(H5N8); outbreaks did not correlate with active surveillance. Conclusions In Vietnam, influenza A(H5) viruses were detected by active surveillance in LBMs year‐round and in most provinces sampled. In addition to outbreak reporting, active surveillance for A(H5) viruses in settings with high potential for animal‐to‐human spillover can provide situational awareness.


Safety and immunogenicity of locally produced trivalent inactivated influenza vaccine (Tri Fluvac) in healthy Thai adults aged 18–64 years in Nakhon Phanom: A Phase III double blinded, three-arm, randomized, controlled trial

December 2023

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31 Reads

Vaccine

Background Domestic influenza vaccine production facilitates a sustainable supply for mitigating seasonal influenza and improves national health security by providing infrastructure and experience for pandemic vaccine production, if needed. Methods A Phase III, double blind, randomized controlled trial was conducted from Sep 2019-Oct 2020 in healthy adults 18–64 years in Nakhon Phanom, Thailand. Randomization (3:3:1) compared study vaccine (Tri Fluvac), saline placebo, and an active comparator (licensed vaccine). Primary outcomes were superior efficacy compared to placebo based on RT-PCR-confirmed influenza virus infection within 12 months and non-inferiority compared to active comparator based on immunogenicity (HAI assay) at 28 days. Safety was also assessed. Results The trial enrolled 4,284 participants (Tri Fluvac = 1,836; placebo = 1,836; active comparator = 612). There were 29 RT-PCR positive influenza infections (10 Tri Fluvac, 5.5/1,000 PY; 19 placebo, 10.4/1,000PY; 0 comparator) for an absolute protective efficacy of 46.4 (95 % CI = −22.0–76.5) compared with placebo, but the power was 43.7 %. Seroconversion difference rates between Tri Fluvac and comparator at Day 28 were 1.74 (95 % CI: −2.77, 6.25), 2.22 (−2.40, 6.84), and −0.57 (−5.41, 4.27) for A(H1N1), A(H3N2), and B strains, respectively. Adverse and severe adverse events occurred in 175 (9.5 %) Tri Fluvac, 177 (10.8 %) placebo, and 66 (10.8 %) comparator arms (p-value = 0.437, Tri Fluvac vs. comparator) Conclusions Tri Fluvac was well tolerated, and immunogenicity was non-inferior to the active comparator, meeting U.S. Food and Drug Administration (FDA) criteria for adult vaccine licensure. Few acute respiratory infections were reported during intense COVID-19 pandemic restrictions, resulting in insufficient power to evaluate clinical efficacy.


Citations (74)


... Human infections typically result from direct or indirect contact with infected poultry. Recent outbreaks in animals, alongside sporadic human cases, highlight the urgent need for continuous surveillance, rapid response systems, and ongoing research into vaccines and antiviral treatments [12,13]. ...

Reference:

Highly Pathogenic Avian Influenza H5N1 in Cats (Felis catus): A Systematic Review and Meta-Analysis
Highly Pathogenic Avian Influenza A(H5N1) Virus Infections in Humans
  • Citing Article
  • December 2024

The New-England Medical Review and Journal

... Another reassortant clade 2.3.4.4b variant has been circulating in North America, causing infections of dairy cattle in the US since early 2024 8,9 . Although human infections with these H5N1 variants are still sporadic and human-to-human transmissions have not been reported 10 , respiratory droplet transmission has been observed in studies using mammalian models 11 . The altered tissue tropism for a greater range of mammalian species has raised major concerns regarding the evolutionary pathway of clade 2.3.4.4b viruses towards human infections 8,12 . ...

Serologic Evidence of Recent Infection with Highly Pathogenic Avian Influenza A(H5) Virus Among Dairy Workers — Michigan and Colorado, June–August 2024
  • Citing Article
  • November 2024

MMWR. Morbidity and mortality weekly report

... Despite the availability of sensitive diagnostic techniques for the identification of RSV in biological samples it is often underdiagnosed, and as a consequence the impact of RSV infection on hospitalisation and mortality may be underestimated. In particular, limited data are available on RSV infection in patients in Italy, although it is known that a high proportion of patients discharged after hospitalisation with influenza die after discharge (5.5% in one study, 50% of whom died in the 30 days after discharge [10]). In addition, limited retrospective data have been published for patients hospitalised with RSV [11,12], and prospectively collected data are scarce, and thus the outcome, clinical presentation, risk factors and markers (including prognostic) of RSV infection are largely unknown. ...

The burden of all-cause mortality following influenza-associated hospitalizations, FluSurv-NET, 2010-2019
  • Citing Article
  • November 2024

Clinical Infectious Diseases

... CVV has been proposed (57). An outbreak of HPAI H5N1 B3.13 genotype in humans may be detected-given passive (60) and active surveillance at human-animal interfaces (9)-and minimized through deployable medical countermeasures (9). However, preemptive control of animal IAV in wild and domestic populations before zoonoses is ideal. ...

Wastewater Surveillance for Influenza A Virus and H5 Subtype Concurrent with the Highly Pathogenic Avian Influenza A(H5N1) Virus Outbreak in Cattle and Poultry and Associated Human Cases - United States, May 12-July 13, 2024
  • Citing Article
  • September 2024

MMWR. Morbidity and mortality weekly report

... More alarmingly, CDC-confirmed H5N1 HPAIV outbreaks have impacted 989 cattle herds across 17 U.S. states as of March 25, 2025, with affected dairy cows demonstrating clinical manifestations including abnormal fecal consistency, respiratory distress, and decreased milk production [15][16][17][18]. Notably, the bovine-origin H5N1 HPAIV has demonstrated transmission from infected cattle to poultry, domestic cats, raccoons, rodents, and opossums on farms [19][20][21] and even humans [20]. These findings collectively highlight the virus's expanding host range, adaptation to mammalian species, and potential for sustained transmission in agricultural and domestic environments [9]. ...

Outbreak of Highly Pathogenic Avian Influenza A(H5N1) Viruses in U.S. Dairy Cattle and Detection of Two Human Cases — United States, 2024
  • Citing Article
  • May 2024

MMWR. Morbidity and mortality weekly report

... It has been reported that the combination of SARS-CoV-2 circulation and NPIs across the world has had a significant impact on the circulation of other respiratory viruses [9][10][11][12][13][14]. Notably, a global decline in influenza cases and a shift in the seasonal transmission pattern of respiratory syncytial virus (RSV) were evident worldwide. ...

Quantified impacts of non‐pharmaceutical interventions on influenza circulation during the COVID‐19 pandemic in 13 African countries, 2020–2022
  • Citing Article
  • January 2024

... In the past two decades, Vietnam has experienced annual circulation of H5N1, a highly pathogenic avian influenza (HPAI) virus, leading to substantial economic losses and a notable fatality rate 8 . From 2017 to 2022, scientists identified the H5N1 virus strain in live bird markets across various provinces, which poses a significant risk for avian influenza transmission to humans 9 . During 2009-2010, H1N1 was transmitted from swine to humans, resulting in an outbreak in Vietnam 10 . ...

Avian influenza A(H5) virus circulation in live bird markets in Vietnam, 2017–2022
  • Citing Preprint
  • September 2023

... Environmental factors are important in the dynamics of H5N1 transmission. Early diagnosis of newly developing infectious illnesses depends on wildlife health monitoring [42]. Potential epidemics can be detected early with surveillance systems that monitor health trends in wild bird populations [43]. ...

Reported Global Avian Influenza Detections among Humans and Animals during 2013–2022: A Comprehensive Review and Analysis of Available Surveillance Data (Preprint)
  • Citing Article
  • Full-text available
  • February 2023

JMIR Public Health and Surveillance

... Since 2009, the government has provided free influenza vaccines to vulnerable groups such as the elderly, children under five, pregnant women, healthcare workers, and individuals with chronic medical conditions. Tropical African countries are advised to administer the most recent vaccine formulation; however, occasionally due to antigenic drift of circulating strains or incorporation of egg-adaptive substitutions during egg-based vaccine production, vaccine mismatch occurs leading to an impact on vaccine effectiveness [6][7][8]. The choice to select between Northern or Southern vaccine formulations is critical for advocating health policies and can only be achieved if country specific scientific evidence supports it [9]. ...

Timing of seasonal influenza epidemics for 25 countries in Africa during 2010-19: a retrospective analysis

The Lancet Global Health

... Antiviral treatment of influenza can effectively reduce the disease burden on the healthcare system and the odds of hospitalization [12,13]. Additionally, timely administration of antiviral medication can significantly lower the likelihood of complications such as intensive care admission and even death [14]. Previous studies have shown that the most significant benefits of antiviral treatment are typically observed within the first 48 hours of symptom onset [10,15,16]. ...

Effect of neuraminidase inhibitor (oseltamivir) treatment on outcome of hospitalised influenza patients, surveillance data from 11 EU countries, 2010 to 2020

European Communicable Disease Bulletin