Shubranil Das’s research while affiliated with Central Agricultural University and other places

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Publications (22)


Mechanisms of somaclonal variation in micro-propagated plantlets induced by oxidative stress during in vitro culture
Causes of somaclonal variation in tissue culture
Detection method of somaclonal variation in in vitro raised plantlets
From induction to innovation: investigating somaclonal variation induced by tissue culture and its role in advancing fruit crop improvement
  • Article
  • Publisher preview available

April 2025

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222 Reads

Plant Cell Tissue and Organ Culture

Shubranil Das

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Subhranil Datta

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Advancements in tissue culture techniques have enabled the regeneration of a wide array of fruit varieties under in vitro condition. Use of micro-propagation technique is now available for numerous crops at a commercial scale. While this has facilitated clonal propagation and preservation of elite genotypes with superior traits, maintaining high genetic uniformity among regenerated plants remains a challenge due to the chance of induction of somaclonal variation, which results from gene mutations or changes in epigenetic marks. Such genetic variability can undermine the reliability of in vitro cloning and germplasm preservation, making it crucial to ensure the genetic fidelity of in vitro raised plants early in the process. Various strategies have been employed to assess genetic uniformity, including morphological, physiological, biochemical, cellular, and DNA-driven molecular marker methods. Despite its drawbacks, somatic variation also presents an opportunity for breeders to access new genetic diversity relatively quickly and without the need for sophisticated technology, which is especially beneficial for crops that are challenging to breed or possess limited genetic diversity. This paper examines the origins of variation triggered during the tissue culture process and investigates approaches for confirming different genetic fidelity in in vitro raised plantlets and discusses the potential applications of somaclonal variants in fruit crop improvement.

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Functional role of phytohormones in plant growth and development
Phytohormones mediated abiotic stress tolerance in plants
Integrated phytohormone signaling under abiotic stress stress conditions
Phytohormonal signaling in plant resilience: advances and strategies for enhancing abiotic stress tolerance

January 2025

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319 Reads

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3 Citations

Plant Growth Regulation

Abiotic stressorslike drought, salinity, and extreme temperatures significantly hamper global agricultural productivity by adversely affecting plant growth and crop production. As sessile organisms, plants have developed a sophisticated network of signaling pathways to recognize and address environmental challenges. At the heart of these responses are phytohormones, which play animportant role in conferring abiotic stress tolerance. The signaling pathways governed by these phytohormones are crucial for activating the physiological and molecular responses that enable plants to survive under stress conditions. Hormonal crosstalk, an integral component of the phytohormonal network, involves synergistic and antagonistic interactions that finely balance the growth-defense trade-off, allowing plants to optimize their responses to environmental stimuli. Current developments in genetics and molecular biology have shed light on the mechanisms by which phytohormonal signaling pathways are modulated during abiotic stress. This understanding opens new avenues for developing crop cultivars that are more resilient to stressthrough genetic engineering and biotechnological approaches. By manipulating hormonal pathways, it is possible to fortify plants against abiotic stresses, thus ensuring food production in the face of climate change. The present review emphasizes recent advances in understanding how phytohormones (PHs), the central regulators of plant physiological and biochemical responses, mediate plant resilience to such stresses and a strategic method to improve resistance toabiotic stressin horticultural plants, thereby helping agricultural systems remain resilient and sustainable in the face of escalating climatic challenges.


Steps of in vitro regeneration of banana plantlets through immature male bud. a Infloresence (spadix) of banana cv. ‘Amrit Sagar’; b Immature male buds; c Culture of male buds under in vitro condition; d Establishment of male buds under in vitro condition; e Shoot proliferation from male buds; f Shoot elongation and plantlets regeneration from male buds; g Root induction on regenerated plantlets from male buds; h Generation of multiple shoots; i In vitro regenerated plantlets of banana cv. ‘Amrit Sagar’ after secondary hardening
Schematic diagram illustrating in vitro propagation of banana using male bud explants
Root parameters of Musa acuminata (AAA) cv. ‘Amrit Sagar’. a Time taken for root initiation, b Root induction (%), c Number of roots, d Length of roots (cm)
Randomly amplified polymorphic DNA profiles of in vitro regenerated plantlets from male bud explants of Musa acuminata (AAA) cv. ‘Amrit Sagar’ were obtained using amplification with OPA-12. Lane 1: 100 bp DNA Ladder (Promega Biotech India), one donor plant, between two and six regenerated plantlets
ISSR profiles of in vitro regenerated plantlets derived from male bud explants of Musa acuminata (AAA) cv. ‘Amrit Sagar’ were obtained using amplification with inter-simple sequence repeat ISSR 841. Lane 1: 100 bp DNA Ladder (Himedia India), one donor plant, between two and six regenerated plantlets
In Vitro Propagation of Musa Acuminata Cv. ‘Amrit Sagar’ Using Immature Male Buds Ensures Optimized Growth and Genetic Stability

December 2024

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164 Reads

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2 Citations

Applied Fruit Science

The current trend involves using in vitro regenerative methodologies to address the challenges inherent in conventional propagation techniques. Musa acuminata (AAA) cv. ‘Amrit Sagar’, indigenous to Northeast India, holds significant nutritional and biological value; nevertheless, its commercial cultivation encounters impediments such as substandard sucker quality and biotic pressures. In the present investigation, regenerated plants were initiated using male buds of M. acuminata cv. ‘Amrit Sagar’. Explants were cultured on Murashige and Skoog (MS) solid medium supplemented with varying concentrations of 6‑benzylaminopurine (BAP), thidiazuron (TDZ), and α‑naphthaleneacetic acid (NAA). The highest frequency (81.03%) of explants exhibiting white bud-like structures (WBLS) was observed in MS media enriched with TDZ (0.5 mg L⁻¹) and NAA (0.5 mg L⁻¹). Furthermore, the highest frequency (82.99%) of WBLS resulting in shoot emergence was observed in MS media enriched with TDZ (3.5 mg L⁻¹), adenine sulfate (AdS) (20 mg L⁻¹), and NAA (0.5 mg L⁻¹). The results indicated that half-strength MS media supplemented with 2.5 mg L⁻¹ indole-3-butyric acid (IBA) demonstrated superior efficacy, achieving an impressive 80.18% efficiency in root induction. A noteworthy survival rate exceeding 95% was observed for the acclimatized plants. Genetic fidelity tests using randomly amplified polymorphic DNA (RAPD) and inter-simple sequence repeat (ISSR) molecular markers indicated consistent genomic integrity in tissue-cultured plants compared to their maternal counterparts. This research outlines vital insights and optimal conditions for in vitro propagation of this banana variety.


Effect of aluminium toxicity on GI tagged Kachai lemon seedlings

December 2024

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68 Reads

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1 Citation

Physiology and Molecular Biology of Plants

An experiment was performed to understand the effects of aluminium toxicity (AlCl3·6H2O) on Kachai lemon growth and development. The toxic effects of aluminium were assessed for 45 days in sand media. With untreated pots serving as the control, seedlings of 1 month old were exposed to three concentrations of AlCl3·6H2O: 300 μM, 600 μM and 900 μM. The nutrient Hoagland solution was also given to seedlings along with the Aluminium (Al) treatment. The outcome demonstrated that the chlorophyll content and carotenoids declined with the increase of the concentration levels of AlCl3·6H2O and interval of treatment. The contents of O2·− (Super oxide anion), H2O2 (Hydrogen peroxide) and OH (Hydroxyl radical) in seedlings increased with the higher concentration levels of aluminium and longer exposure to Al. Additionally, the activity of the enzymes catalase, superoxide dismutase, ascorbate peroxidase, peroxidase and glutathione reductase were increased in seedlings. Different non-enzymatic antioxidants’ actions like tocopherol and Vitamin C played important defence mechanisms for the maintenance of tolerance in aluminium toxicity by increasing their content with an increase in the concentration of treatment levels in Kachai Lemon.


The signalling pathways and regulatory mechanism of jasmonates in fruit ripening

December 2024

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90 Reads

Acta Physiologiae Plantarum

Jasmonates, which include jasmonic acid (JA) and methyl jasmonate (MeJA), are compounds derived from linolenic acid. In recent years, the quality and phytochemical content of various fruits have been improved using plant growth regulators both before and after harvest. They play a significant role in improving the quality and biochemical composition of different fruit crops, including fruit peel colour, accumulation of anthocyanins, phenolic compounds, and antioxidant activities in the fruit. Further, the fruit ripening process is also accelerated by the application of jasmonate as it influences different physiological and molecular mechanisms of the plant system including regulation of the activities of different hormones during the entire period of fruit growth and development starting from fruit set to till ripening, activation of genes related to ripening, etc. In the case of apples, pre-harvest application of MeJA leads to enhanced fruit coloration by stimulating the anthocyanin biosynthesis gene MdUFGluT. The concentration of JA increases significantly during the early fruit development stage but then decreases sharply, reaching its lowest level when the fruits are fully ripe which signifies its role in initiating the fruit ripening process. Jasmonates can also induce the expression of genes related to ethylene synthesis and promote the production of ethylene gas. Application of jasmonates at the pre-climacteric stage increased the expression of 1-Aminocyclopropane-1-carboxylate synthase 1 (ACS 1) and 1-Aminocyclopropane-1-Carboxylic Acid Oxidase1 (ACO 1) genes. However, the accumulation of ACS1 mRNA decreased when Propyl Dihydro Jasmonate was applied at the climacteric stage, indicating that jasmonates influence system 2 ethylene synthesis pathway. In addition, these two compounds (MeJA and JA) are safe for human consumption ; hence, can be applied at the commercial level to improve the fruit quality and ripening process in different fruit crops. This review provides an overview of the recent advancements in our understanding of the regulation of jasmonate biosynthesis, and the physiological and molecular mechanisms involved in the jasmonate-mediated fruit ripening process.


Unlocking the Potential of Shoot Tip Culture for Rapid Multiplication of Musa acuminata (AAA) cv. Amrit Sagar

November 2024

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86 Reads

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1 Citation

National Academy Science Letters

The current trend leans towards employing an in vitro-based regenerative approach to tackle the various challenges associated with conventional propagation techniques. Musa acuminata (AAA) cv. Amrit Sagar, native to North-east India, holds substantial nutritional and biological significance. However, its commercial cultivation faces obstacles such as poor sucker quality and biotic pressures. In this study, multiple shoots were obtained using shoot tip explants of M. acuminata cv. Amrit Sagar. These explants were cultured on Murashige and Skoog (MS) solid medium supplemented with varying concentrations of 6-Benzylaminopurine (BAP), adenine sulfate (AdS), and α-Naphthaleneacetic acid (NAA). To facilitate in vitro propagation, surface sterilization was optimized using 4.0% sodium hypochlorite (NaOCl) for 20 min, followed by 0.1% mercuric chloride (HgCl2) for 20 min, resulting in a contamination rate as low as 13.33%. Shoot regeneration achieved an establishment rate of 87.33% using shoot tips in MS medium with 2.5 mg L-1 BAP, 40 mg L-1 AdS, and 0.5 mg L-1 α-Naphthalene acetic acid (NAA). Optimal multiple shoot formation was observed in MS medium containing 10 mg L-1 BAP, 40 mg L-1 AdS, and 0.5 mg L-1 NAA. Regarding root development, 92.90% efficiency was noted in half-strength MS medium supplemented with 2.5 mg L-1 Indole-3-butyric acid (IBA).


Melatonin biosynthesis pathway in plants (modified from Bose and Howlader 2020). ROS Reactive oxygen species, CBFs C-repeat-binding factors, DREB1s Drought response element Binding 1 factors, HSP Heat shock proteins, APX Ascorbate peroxidases, CAT Catalase, NCED 9-cis-epoxycarotenoid dioxygenase, CYP707 ABA catabolism gene, Chlase Chlorophyllase, PPX exopolyphosphatase, Chl-PRX chlorophyll degrading peroxidases
Melatonin-induced stress alleviation mechanism (modified from Tiwari et al. 2020). The enzymes used in every stage for catalytic reaction are as follows: TDC Tryptophan decarboxylase, T5H Tryptamine 5‑hydroxylase, SNAT Serotonin-N-acetyltransferase, AANAT Arylalkylamine N‑acetyltransferase, ASMT Nacetylserotonin methyltransferase, HIOMT Hydroxyindole-O-methyltransferase, AADC Aromatic-Lamino-acid decarboxylase, TPH Tryptophan hydroxylase, ASDAC N-acetylserotonin deacetylase, IAA Indole-3-acetic acid
Unlocking Nature’s Stress Reliever: The Role of Melatonin in Enhancing the Resilience of Fruit Crops Against Abiotic Stress

October 2024

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155 Reads

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1 Citation

Applied Fruit Science

Melatonin (MT), discovered as N‑acetyl-5-methoxytryptamine in 1958, exhibits significant potential as a regulator of plant growth, development and responses to environmental stressors. Its diverse levels across organs and species make it an intriguing subject for functional studies. This review explores the potential of MT, whether administered endogenously or exogenously, in mitigating various environmental stressors such as cold, metal toxicity, drought, salinity, chilling injuries, temperature fluctuations etc. A pivotal aspect of MT action involves its direct inhibition of reactive oxygen species (ROS) and reactive nitrogen species (RNS), pivotal players in oxidative stress. Mechanisms like enhanced antioxidant enzyme activity, bolstered non-enzymatic antioxidant systems, and activation of enzymes repairing oxidized proteins contribute to MT’s ability to confer resistance against abiotic stresses. Furthermore, by inducing the expression of genes related to antioxidant enzymes during stress, MT acts as a key regulator in orchestrating plant defense responses against environmental challenges. These collective actions underscore the role of MT in enhancing plant resilience to such challenges. The interaction of MT with various phytohormones in drought stress regulation prompts exploration of similar mechanisms to address diverse stressors in horticultural crops. MT’s collaborative synergy with fungicides presents a promising strategy for reducing reliance on harmful chemicals in fruit crop cultivation, thereby minimizing the environmental impact and enhancing crop management practices. However, this review also underscores the need for further research to explore how MT protects fruit crops from environmental challenges, potentially leading to environmentally friendly agricultural practices and safer food production.


Mango (Mangifera indica L.) Cultivars with Alternate Bearing Tendencies were Subjected to Physio-Chemical, Nutritional and Enzymatic Assays

October 2024

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59 Reads

Journal of Soil Science and Plant Nutrition

Alternate bearing is one of the major concerns in majority of the commercial mango cultivars which significantly decrease the productivity as well as profitability of the crop. In mango, biochemical and physiological mechanism for flowering in alternate year is very scanty. Therefore, an effort has been made for proper understanding of biochemical and physiological basis behind on and off season flowering in mango. Four commercial mango cultivars of alternate-bearing habit viz. Bombay, Dashehari, Langra and Zardalu were selected for the investigation. Five trees under each cultivar were taken as ‘On year’ trees while another five as ‘Off year’ trees based on their bearing behavior during the previous year. The investigation was carried out for two consecutive years. Hence, the ‘On year’ tree of first year turned as ‘Off year’ tree next year and visa-vise. Physiological, biochemical, nutritional and enzymatic activity in the leaf was estimated at bud break and panicle emergence stage. Carbohydrate, protein, phenol, flavonoids and tannin contents of on-season trees had substantially higher at bud break stage (208.95 µg g− 1, 10.00 mg 100 g− 1, 4.41 mg g− 1, 28.86 mg g− 1 and 7.12 mg g− 1, respectively). At bud break stage, nitrogen, phosphorous and potassium content in leaf was recorded significantly higher (17.0, 2.50 and 6.60 g kg− 1, respectively) during off year although reverse trend was noticed for micronutrients content in the leaf. Further, off season trees had higher oxidative enzymes activity while on-season trees had a larger count of generative buds per branch (96.20). Increased physiological and biochemical activities in the leaf during bud break stage is highly responsible for panicle emergence in mango. Although, higher N, P, K content and increased oxidative enzymes activity leads to the formation of vegetative buds instead of generative one in mango while leaf’s elevated micronutrient content at the bud break stage is beneficial for the production of generative buds in mango.



In vitro multiplication of Rambutan (Nephilium lappaceum L.) cv. Arka Coorg Arun through nodal segments

August 2024

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29 Reads

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1 Citation

International Journal of Plant Research

Tropical fruits serve as vital pillars for health promotion, economic support, and cultural enrichment across diverse regions due to their array of flavors and nutritional advantages. This research endeavors to furnish critical insights and optimal conditions for the in vitro propagation of Rambutan (Nephelium lappaceum L.) cv. Arka Coorg Arun. Through meticulous micro propagation studies, it was observed that single nodal segments from laboratory-grown current-season seedlings and one-year-old seedlings exhibited significantly elevated survival rates at 46.67% and 43.33%, respectively. Employing carbendazim 50 WP, gentamicin, and mercuric chloride for surface sterilization led to a notable decrease in contamination rates (31.67%) alongside an augmented survival rate (61.67%). Most effective treatment in mitigating phenolic browning (10.00%) and achieving a robust survival rate (85.55%) involved ascorbic acid, 0.5% PVP, and 2% sucrose. For shoot initiation, optimal medium was identified as WPM + BAP (2 mg/L) for nodal explants from both seedling types, showcasing survival rates of 91.67% and 86.67% and a swift initiation period of 9.33 and 9.00 days, respectively. Additionally, GA3 at 2 mg/L significantly stimulated shoot elongation, yielding heightened shoot length (3.18 cm) and maximum mean shoot diameter (0.46 cm). In vitro rooting achieved its greatest success with MS + IBA (4 mg/L) + IAA (4 mg/L), demonstrating a peak rooting percentage (78.33%) and a shorter duration for root initiation (38.67 days). The subsequent hardening of rooted plantlets through transplantation into plastic cups filled with coco peat culminated in successful adaptation. These advancements not only bolster the sustainable cultivation of rambutan but also align with broader objectives, including the promotion of agricultural productivity, conservation of genetic diversity, and assurance of food security in tropical fruit-producing regions.


Citations (9)


... Both ABA and ETH can promote ROS scavenging to enhance the cold tolerance in fruit crops (Rubio et al. 2019;Wang et al. 2021a). Brassinosteroids (BRs) are a group of steroidal hormones that can alleviate the toxic effects of salt on primary photosynthetic processes by maintaining the plastoquinone pool oxidation and PSII photochemistry efficiency (Das et al. 2025). Increasing research evidence shows that salicylic acid (SA) and jasmonates (JAs) can improve plant performance by enhancing antioxidant activity against environmental stresses, such as heat, cold, and salt stress Das et al. 2025). ...

Reference:

Sensing, Adapting and Thriving: How Fruit Crops Combat Abiotic Stresses
Phytohormonal signaling in plant resilience: advances and strategies for enhancing abiotic stress tolerance

Plant Growth Regulation

... ROS primarily originate from mitochondrial metabolism and include hydroxyl radicals (OH − ), superoxide anions (O 2 − ), hydrogen peroxide (H 2 O 2 ), and hypochlorite ions (OCl − ) [9]. Under normal mitochondrial function, terminal oxygen electron acceptors are reduced to water. ...

Effect of aluminium toxicity on GI tagged Kachai lemon seedlings
  • Citing Article
  • December 2024

Physiology and Molecular Biology of Plants

... These mechanisms include signal perception and transduction, the activation of stress-responsive genes, and physiological changes that confer resilience or resistance. Key examples include the accumulation of osmoprotectants, reactive oxygen species-scavenging enzymes, and stress-responsive hormones like abscisic acid under abiotic stresses, which play a crucial role in damage mitigation [3]. Conversely, biotic stress responses include the recognition of pathogen-associated molecular patterns, the activation of defense pathways such as SAR, and the hypersensitive response [4]. ...

Unlocking Nature’s Stress Reliever: The Role of Melatonin in Enhancing the Resilience of Fruit Crops Against Abiotic Stress

Applied Fruit Science

... Total soluble solids (TSS) content of aonla fruit pulp was measured by using a hand refractometer with a range of 0-32°B (Brix) (Bulo et al., 2024). Titratable acidity was determined by using Chandra et al.'s (2020) method with 0.1 N NaOH solution using phenolphthalein as an indicator. ...

Nutrient Profiling of Wild Aonla (Emblica officinalis Gaertn.) Populations in Northeast India: Assessing the Potential of this Fruit Tree for Ecological and Human Health Restoration
  • Citing Article
  • November 2023

Journal of Food Composition and Analysis

... The peels, together with those of oranges and tangerines, are used to extract critical oils and make sweets. In addition, these peels include sugars, organic acids, and phenols, which offer them antioxidant homes and potential benefits towards bacteria and viruses [5][6][7]. It is really worth noting that ingesting or using the peels of end result and greens not simplest will increase fiber intake, however additionally reduces the quantity of meals thrown into the trash, which is a healthful and environmentally friendly practice [8]. ...

Unraveling Physicochemical profiles and Bioactivities of Citrus Peel Essential Oils -A Comprehensive Review

European Food Research and Technology

... In temperate climates, most crop trees require a cool accumulation during the winter, followed by a subsequent heat during their dormant phase to restart the growth and initiate blossoming in the following spring [51]. Blossoming is a critical stage for fruit development and significantly impacts crop fruiting, production, and yield [52]. Cherry is one of the fruit crops with the highest number of cool hours needed [53], being very sensitive to a reduced winter chill accumulation and to a late spring frost that can lead to flower damage (if occurring in an advancement of flower blossom time) [54]. ...

Impact of Climate Change on Fruit Crops- A Review

Current World Environment

... Table 6 Correlation between physiological, biochemical, nutritional and enzymatic activity in leaf of different mango cultivars at bud break stage with bearing behaviour (Hazis et al. 2018). Further, it also helped to supply increased food reserves from leaves (source) to the developing reproductive buds (sink) (Das et al. 2023) resulting maximum flower induction during the upcoming on season as compared to the off season. Besides, these physiological attributes were estimated significantly higher in the cultivar Langra and Bombay as compared to Dashehari and Zardalu, irrespective of season, which might be attributed with the genetical differences among the cultivars (Sharma et al. 2019). ...

Assessment of Physio-Chemical, Nutritional and Enzymatic Activities in the Bud in Relation to Flowering Behaviours of Different Alternate Bearing Mango ( Mangifera indica L.) Cultivars
  • Citing Article
  • January 2023

... Originária da Indonésia e Malásia, ela pode ser encontrada também em outras partes da Ásia, América Central e América do Sul (WINDARSIH, 2022). O rambutan, como é popularmente conhecido, é rico em nutrientes como vitamina C, fibras, minerais e antioxidantes, o que o torna altamente valorizado na culinária e na medicina (BHATTACHARJEE et al., 2022). Além disso, a árvore é uma das mais altas da família Sapindaceae, podendo atingir até 20 m de altura (RASHIED et al., 2022). ...

Rambutan (Nephelium lappaceum L.): A potential fruit for industrial use, serving nutraceutical, livelihood interests and enhancing climate resilience
  • Citing Article
  • November 2022

South African Journal of Botany

... BRs influence a wide range of plant processes, including cell division and elongation in stems and roots, photomorphogenesis, reproductive development, leaf senescence, and stress responses (Ali et al. 2007;Sirhindi 2013;Fariduddin et al. 2014;Bhattacharjee et al. 2022). Brassinolide (BL), the first BR to be isolated and characterized, was extracted from rapeseed (Brassica napus) pollen by Grove et al. (1979). ...

Advances in Application of Unexploited Plant Bio-regulators for Fruit Production: A Review

Agricultural Reviews