Shaun Thompson’s scientific contributions

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Publications (4)


Figure 1-Study area, Life Cycle Monitoring Stations in Coastal Mendocino County, California.  
Figure 2-Study area, regional GRTS survey reaches in Coastal Mendocino County, California, 2014-15.  
Figure 6. Coho Salmon trends in coastal Mendocino County 2000 to 201.5 A. Smolt abundance trends. B. Recruits per spawner (population productivity) trends. C. Smolts per smolt (freshwater productivity) trends. D. Smolt to adult survival trends.
Figure.7. Coho Salmon freshwater (egg to smolt) survival trends in coastal Mendocino County 2000 to 2015. A. All years. B. Cohort 1. C. Cohort 2. D. Cohort 3.
Figure 8.Trends in Mendocino coast region Coho Salmon escapement from 2009 to 2015.
Coastal Mendocino County Salmonid Life Cycle and Regional Monitoring: Monitoring Status and Trends for 2015.
  • Technical Report
  • Full-text available

February 2016

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379 Reads

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1 Citation

Wendy Holloway

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Shaun Thompson

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[...]

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California’s coastal salmon and steelhead populations are currently listed as either threatened or endangered under the federal and state Endangered Species Acts; both require monitoring to provide measures of recovery. Since 2004 the California Department of Fish and Wildlife and NOAA Fisheries have been developing a monitoring plan for California’s coastal salmonids (the California Coastal Salmonid Monitoring Plan- or CMP). The CMP monitors the status and trends of salmonids at evolutionarily significant regional scales and provides population level estimates. For the CMP, data to evaluate adult populations are collected using a spatially balanced probabilistic design (e.g., Generalized Random Tesselation Stratified- or GRTS). Under this scheme a two-stage approach is used to estimate status. Each year regional redd surveys (stage 1) are conducted in stream reaches in a GRTS sampling design at a survey level of 15% of available habitat or a minimum of 41 reaches, whichever results in fewer reaches. Spawner: redd ratios are derived from Life Cycle Monitoring (LCM) stations (stage 2) where “true” escapement is estimated using capture-recapture methods. These ratios are used to estimate regional escapement from expanded redd counts. The CMP was first implemented in California in 2008- 19, using the methods described above, to estimate salmonid escapement for the Mendocino coast region. Here we present the results of the seventh year (2014–15) of this monitoring effort and discuss our findings in the context of expanding the CMP to all of coastal California. We present escapement data for major portions of the California Coastal (CC) Chinook Salmon Evolutionarily Significant Unit (ESU), the Central California (CCC) Coho Salmon ESU, and the Northern California (NC) Steelhead Distinct Population Segment (DPS). In addition, we present 2014–15 data from five LCM stations, in which multiple stages of salmonid life history data are collected, and combine this information with previous year’s data to evaluate status and trends for Coho Salmon and steelhead

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Coastal Mendocino County Salmonid Life Cycle and Regional Monitoring: Monitoring Status and Trends for 2014

November 2014

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151 Reads

California's coastal salmon and steelhead populations are currently listed as either threatened or endangered federal or state endangered species acts; both require monitoring to provide measures of recovery. Since 2004 the California Department of Fish and Wildlife (formerly California Department of Fish and Game) and NOAA Fisheries have been developing a monitoring plan for California's coastal salmonids (the California Coastal Salmonid Monitoring Plan-or CMP). The CMP monitors the status and trends of salmonids at evolutionarily significant regional scales and provides population level estimates. For the CMP, data to evaluate adult populations are collected using a spatially balanced probabilistic design (e.g., Generalized Random Tesselation Stratified-or GRTS). Under this scheme a two-stage approach is used to estimate status. Each year regional redd surveys (stage 1) are conducted in stream reaches in a GRTS sampling design at a survey level of 15% of available habitat or a minimum of 41 reaches, whichever results in fewer reaches. Spawner: redd ratios are derived from smaller scale census watersheds (stage 2) where " true " escapement is estimated using capture-recapture methods. These ratios are used to estimate regional escapement from expanded redd counts. The 2008–09 season was the first implementation of the CMP in the state, using the methods described above, to estimate salmonid escapement for the Mendocino coast region. Here we present the results of the sixth year (2013–


Coastal Mendocino County salmonid life cycle and regional monitoring: monitoring status and trends for 2013.

January 2014

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152 Reads

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1 Citation

California’s coastal salmon and steelhead populations are listed under California and Federal endangered species acts; both require monitoring to provide measures of recovery. Since 2004 the California Department of Fish and Game and NOAA Fisheries have been developing a monitoring plan for California’s coastal salmonids (the California Coastal Salmonid Monitoring Plan- or CMP). The CMP monitors the status and trends of salmonids at evolutionarily significant regional scales and provides population level estimates. For the CMP, data to evaluate adult populations are collected using a spatially balanced probabilistic design (e.g., Generalized Random Tesselation Stratified- or GRTS). Under this scheme a twostage approach is used to estimate status. Each year regional redd surveys (stage 1) are conducted in stream reaches in a GRTS sampling design at a survey level of 15% of available habitat or a minimum of 41 reaches, whichever results in fewer reaches. Spawner: redd ratios are derived from smaller scale census watersheds (stage 2) where “true” escapement is estimated using capture-recapture methods. These are used to estimate regional escapement from expanded redd counts. In 2008–09 we applied the results of our previous studies to estimate salmonid escapement for the Mendocino coast region, the first implementation of the CMP in the state. Here we present the results of the fifth year (2012–13) of this monitoring effort and discuss our findings in the context of expanding the CMP to all of coastal California. We discuss sample frame development, sample size, and present escapement data for major portions of the California Coastal (CC) Chinook Salmon Evolutionarily Significant Unit (ESU), the Central California (CCC) Coho Salmon ESU, and the Northern California (NC) Steelhead Distinct Population Segment (DPS). In addition, we present 2012–13 data from three life cycle monitoring streams and combine this information with previous year’s data to evaluate status and trends for coho salmon and steelhead


Coastal Mendocino County salmonid life cycle and regional monitoring: monitoring status and trends for 2012

January 2013

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66 Reads

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1 Citation

California’s coastal salmon and steelhead populations are listed under California and Federal endangered species acts; both require monitoring to provide measures of recovery. Since 2004 the California Department of Fish and Game and NOAA Fisheries have been developing a monitoring plan for California’s coastal salmonids (the California Coastal Salmonid Monitoring Plan- or CMP). The CMP monitors the status and trends of salmonids at evolutionarily significant regional scales and provides population level estimates. For the CMP, data to evaluate adult populations are collected using a spatially balanced probabilistic design (e.g., Generalized Random Tesselation Stratified- or GRTS). Under this scheme a twostage approach is used to estimate status. Each year regional redd surveys (stage 1) are conducted in stream reaches in a GRTS sampling design at a survey level of 15% of available habitat or a minimum of 41 reaches, whichever results in fewer reaches. Spawner: redd ratios are derived from smaller scale census watersheds (stage 2) where “true” escapement is estimated using capture-recapture methods. These are used to estimate regional escapement from expanded redd counts. In 2008-09 we applied the results of our previous studies to estimate salmonid escapement for the Mendocino coast region, the first implementation of the CMP in the state. Here we present the results of the fourth year (2011─12) of this monitoring effort and discuss our findings in the context of expanding the CMP to all of coastal California. We discuss sample frame development, sample size, and present escapement data for major portions of the California Coastal (CC) Chinook Salmon Evolutionarily Significant Unit (ESU), the Central California (CCC) Coho Salmon ESU, and the Northern California (NC) Steelhead Distinct Population Segment (DPS). In addition, we present 2011─12 data from three life cycle monitoring streams and combine this information with previous years’ data to evaluate status and trends for coho salmon and steelhead

Citations (2)


... .-Salmonid abundance surveys were conducted in a spatially balanced, systematic sample of the units selected for additional measures during the survey. An existing Generalized Random Tessellation Sampling (GRTS) design, developed for regional spawning ground surveys (Gallagher et al. 2013), was employed. Salmonid Pudding Creek (Figure 1). ...

Reference:

Investigation of the relationship between physical habitat and salmonid abundance in two northern California streams
Coastal Mendocino County salmonid life cycle and regional monitoring: monitoring status and trends for 2013.

... study area is located in coastal Mendocino County, northern California, and includes the Ten Mile River, Big River, Garcia River, Big Salmon Creek, Usal Creek, and Noyo River drainages ( Figure 1). All six watersheds harbor Coho Salmon and steelhead O. mykiss; the Ten Mile, Big, Garcia, and Noyo rivers also contain Chinook Salmon O. tshawytscha (Gallagher and Wright 2012;Gallagher et al. 2013). Coho Salmon in these streams are listed as endangered under both the U.S. Endangered Species Act and the California Endangered Species Act, whereas Chinook Salmon and steelhead are listed as threatened only under the U.S. Endangered Species Act. ...

Coastal Mendocino County salmonid life cycle and regional monitoring: monitoring status and trends for 2012