Shantanu Banerji’s research while affiliated with University of Manitoba and other places

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Publications (65)


The Terry Fox Research Institute Marathon of Hope Cancer Centres Network: A pan-Canadian precision oncology initiative
  • Literature Review

April 2025

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205 Reads

Cancer Cell

Tess Aalto

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Maria Abacan

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Shirin Abadi

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[...]

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Muhammad Zulfigar


Comparison of Comprehensive Genomic Profiling (CGP) and traditional genetic testing.
Comparison of liquid biopsy and tissue biopsy methods.
Drug reimbursement process in Canada. Diagram adapted from Ward et al. [24].
Results of patient survey on access to biomarker and CGP testing in Canada.
Toward Timely and Equitable Advanced Biomarker Testing for Patients with Metastatic Cancer in Canada
  • Article
  • Full-text available

February 2025

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32 Reads

The explosion in biomarker testing over the past two decades continues to transform cancer care in Canada and around the world. Precision medicine is supported by identifying actionable mutations that direct therapeutic choices, thus improving survival and quality of life, especially for patients with advanced/metastatic disease. In addition, our growing understanding of the genetic basis of cancer is advanced by research employing ever-expanding databases of genetic mutations, therapies and outcomes. Despite this promising progress, however, access to biomarker testing remains inequitable across Canada, to the detriment of patients. Several underlying factors contribute to this situation, including the need for investment in and standardization of laboratory medicine infrastructure and processes, and the lack of suitable methods for cost/benefit evaluations to inform funding decisions. In 2024, a Canadian conference brought together patients, clinicians, researchers, policy-makers and scientists to address “Equitable Access to Advanced Biomarker Testing for Canadian Metastatic Cancer Patients”. Two major themes arose from the conference: the urgent need to adopt comprehensive genomic profiling (CGP) as a standard of care across Canada, and the emerging role of liquid biopsy in accelerating access to biomarker testing for patients with advanced/metastatic cancer.

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PRISMA diagram.
aPrimary or associated reports of eligible studies that were not identified through database search.
bAll types of ALK and EGFR alterations were included.
cA single trial may have multiple reports for different biomarker-selected patient cohorts or subsets; likewise, a single report may provide data from single or multiple studies on different biomarker-selected patient cohorts or subsets.
ALK, anaplastic lymphoma kinase; ASCO, American Society of Clinical Oncology; BRAF, v-raf murine sarcoma viral oncogene homolog B1; EGFR, epidermal growth factor receptor; ESMO, European Society for Medical Oncology; FGFR, fibroblast growth factor receptor; HER2, human epidermal growth factor receptor 2; KRAS, Kirsten rat sarcoma viral oncogene homolog; MET, hepatocyte growth factor receptor; n, number; NRG1, neuregulin-1; NSCLC, non-small-cell lung cancer; NTRK, neurotrophic tyrosine receptor kinase; Pl3K, phosphoinositide 3-kinase; PRISMA; Preferred Reporting Items for Systematic Reviews and Meta-Analyses; PTK7, tyrosine-protein kinase-like 7; RET, rearranged during transfection; ROS1, c-ros oncogene 1; WCLC, World Conference on Lung Cancer.
Clinical activity of selected types of agents used as initial targeted therapy across different oncogene-driven NSCLC settings.
Box and whiskers plot of full (horizontal line segments) and interquartile ranges (boxes), median (vertical lines inside the boxes) and mean (dots) ORR values from clinical studies grouped by setting and type of systemic agent. ORRs for first-line CT alone (platinum doublets), 313 with TT, 314 or ICIs 315 were obtained from meta-analyses and are provided as reference points. Studies of initial TT in alteration-drug-matched settings often include patients previously treated with standards of care for advanced, biomarker-unselected NSCLC. Studies in patients previously treated with alteration-matched TT were not included (e.g., studies of ROS1 inhibitors in patients previously treated with a ROS1 TKI).
a“Altered” was used to convey any alteration type, including amplification, overexpression, and mutation. Most of the alterations in “MET-altered” are in MET-amplified or -overexpressed but may also include a small fraction of patients with MET mutations.
b“Enriched” was used to convey increased levels of gene products (RNA or protein amplification or overexpression).
ADC, antibody–drug conjugate; ALK, anaplastic lymphoma kinase; BRAF, v-Raf murine sarcoma viral oncogene homolog B1; CT, chemotherapy; HER2, human epidermal growth factor receptor 2; ICI, immune checkpoint inhibitor; KRAS, Kirsten rat sarcoma viral oncogene homolog; MA, meta-analysis; MEK, mitogen-activated protein kinase kinase; MET, hepatocyte growth factor receptor gene; NMA, network meta-analysis; NSCLC, non-small-cell lung cancer; NTRK, neurotrophic tyrosine receptor kinase; ORR, overall response rate; PK, pharmacokinetics; PLT, platinum (doublets); RET, rearranged during transfection; ROS1, c-ros oncogene 1; RNA, ribonucleic acid; TKI, tyrosine kinase inhibitor; TRK, tropomyosin receptor kinase; TT, targeted therapy; 1L, first-line.
Select actionable molecular alterations in oncogene-driven NSCLC.
Efficacy outcomes of clinical trials assessing novel targeted therapy in molecularly selected, target-matched advanced NSCLC.
The continually evolving landscape of novel therapies in oncogene-driven advanced non-small-cell lung cancer

Non-small-cell lung cancer (NSCLC) is a highly heterogeneous disease that is frequently associated with a host of known oncogenic alterations. Advances in molecular diagnostics and drug development have facilitated the targeting of novel alterations such that the majority of NSCLC patients have driver mutations that are now clinically actionable. The goal of this review is to gain insights into clinical research and development principles by summary, analysis, and discussion of data on agents targeting known alterations in oncogene-driven, advanced NSCLC beyond those in the epidermal growth factor receptor (EGFR) and the anaplastic lymphoma kinase (ALK). A search of published and presented literature was conducted to identify prospective trials and integrated analyses reporting outcomes for agents targeting driver gene alterations (except those in EGFR and ALK) in molecularly selected, advanced NSCLC. Clinical efficacy data were extracted from eligible reports and summarized in text and tables. Findings show that research into alteration-directed therapies in oncogene-driven, advanced NSCLC is an extremely active research field. Ongoing research focuses on the expansion of new agents targeting both previously identified targets (particularly hepatocyte growth factor receptor (MET), human epidermal growth factor receptor 2 (HER2), and Kirsten rat sarcoma viral oncogene homolog (KRAS)) as well as novel, potentially actionable targets (such as neuregulin-1 (NRG1) and phosphatidylinositol 3-kinase (PI3K)). The refinement of biomarker selection criteria and the development of more selective and potent agents are allowing for increasingly specific and effective therapies and the expansion of clinically actionable alterations. Clinical advances in this field have resulted in a large number of regulatory approvals over the last 3 years. Future developments should focus on the continued application of alteration therapy matching principles and the exploration of novel ways to target oncogene-driven NSCLC.


Characteristics of landmark clinical trials of immune checkpoint inhibitors for Stage IV NSCLC in the first-line setting.
Cont.
Characteristics of landmark clinical trials of immune checkpoint inhibitors for Stage IV NSCLC in the 2+ line setting.
Immunotherapy in Patients with Advanced Non-Small-Cell Lung Cancer Under-Represented by Clinical Trials

September 2024

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68 Reads

Since the initial US FDA approval of an immune checkpoint inhibitor (ICI) for the treatment of non-oncogene-driven non-small-cell lung cancer (NSCLC) nine years ago, this therapeutic strategy has been cemented as a crucial component of treatment for most of these patients. However, there is a clear efficacy–effectiveness gap whereby patients in the ‘real world’ seem to have more modest clinical outcomes compared to those enrolled in landmark clinical trials. This gap may be driven by the under-representation of important patient populations, including populations defined by clinical or molecular characteristics. In this review, we summarize the data outlining the evidence of ICIs in patients with poor Eastern Cooperative Oncology Group performance status (ECOG PS), underlying autoimmune disease (AID), older age, active brain metastases (BMs), and molecular aberrations such as EGFR mutations, ALK fusions, BRAF mutations and ROS1 fusions.



Mental Disorders Among Adolescents and Young Adults With Cancer: A Canadian Population-Based and Sibling Cohort Study

February 2024

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45 Reads

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6 Citations

Journal of Clinical Oncology

PURPOSE To compare the cumulative incidence of mental disorders among adolescents and young adults (AYAs) diagnosed with cancer with the general population and their unaffected siblings. METHODS A retrospective, population-based, matched cohort design was used to investigate the impact of cancer diagnosis on mental disorders among individuals age 15-39 diagnosed between 1989 and 2019. Two cancer-free cohorts were identified: matched population-based and sibling cohorts. Outcomes included incidence of mood and anxiety disorders, substance use disorders, suicide outcomes, psychotic disorders, and any of the preceding four categories within 5 years of cancer diagnosis. Competing risk regression was used to estimate adjusted subhazard ratios (aSHR) and 95% CIs. RESULTS Among 3,818 AYAs with cancer matched to the population-based cancer-free cohort, individuals with cancer were more likely to be diagnosed with incident mental disorders than those without cancer; the risk was highest immediately after a cancer diagnosis and decreased over time with aSHR [95% CI] for mood and anxiety disorders at 0-6 months (11.27 [95% CI, 6.69 to 18.97]), 6-12 months (2.35 [95% CI, 1.54 to 3.58]), and 12-24 months (2.06 [95% CI, 1.55 to 2.75]); for substance use disorders at 0-6 months (2.73 [95% CI, 1.90 to 3.92]); for psychotic disorders at 0-6 months (4.69 [95% CI, 2.07 to 10.65]); and for any mental disorder at 0-6 months (4.46 [95% CI, 3.41 to 5.85]), 6-12 months (1.56 [95% CI, 1.14 to 2.14]), and 12-24 months (1.7 [95% CI, 1.36 to 2.13]) postcancer diagnosis. In sibling comparison, cancer diagnosis was associated with a higher incidence of mood and anxiety and any mental disorder during first 6 months of cancer diagnosis. CONCLUSION AYAs with cancer experience a greater incidence of mental disorders after cancer diagnosis relative to population-based and sibling cohorts without cancer, primarily within first 2 years, underscoring the need to address mental health concerns during this period.


Analysis of OS by patient characteristic: (A) Overall cohort (n = 304); (B) Sex (n = 304); (C) ECOG PS (n = 302); (D) LDH (n = 304); (E) Serum sodium (n = 304); (F) Hemoglobin (n = 304). CI, confidence interval; ECOG PS, Eastern Cooperative Oncology Group Performance Status; Hgb, hemoglobin; LDH, lactate dehydrogenase; Na, sodium; OS, overall survival.
Analysis of limited-stage patient’s OS by treatment pattern who were alive at 0.5 years (N = 275): (A) Type of thoracic RT; (B) PCI. OS, overall survival; PCI, prophylactic cranial irradiation; RT, radiotherapy.
TABLE 3 Continued
Baseline patient and disease characteristics.
Real-world predictors of survival in patients with limited-stage small-cell lung cancer in Manitoba, Canada

December 2023

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71 Reads

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1 Citation

Background Although therapy for limited-stage small-cell lung cancer (LS-SCLC) is administered with curative intent, most patients relapse and eventually die of recurrent disease. Chemotherapy (CT) with concurrent radiotherapy (RT) remains the standard of care for LS-SCLC; however, this could evolve in the near future. Therefore, understanding the current prognostic factors associated with survival is essential. Objective This real-world analysis examines factors associated with long-term survival in patients with LS-SCLC treated with CT in Manitoba, Canada. Methods A retrospective cohort study was conducted using Manitoba Cancer Registry and CancerCare Manitoba records. Eligible patients were aged >18 years and had cytologically confirmed LS-SCLC diagnosed between January 1, 2004, and December 31, 2018, for which they received CT ± RT. Baseline patient, disease, and treatment characteristics and survival duration, characterized as short (<6 months), medium (6−24 months), and long term (>24 months), were extracted. Overall survival (OS) was estimated at one, two, and five years and assessed using Kaplan-Meier methods and Cox proportional hazards models. Results Over the 15-year study period, 304 patients met the eligibility criteria. Long-term survivors comprised 39.1% of the cohort; at diagnosis, this subgroup was younger, more likely to have Eastern Cooperative Oncology Group Performance Status (ECOG PS) 0, and have normal lactate dehydrogenase, sodium, and hemoglobin levels. OS estimates for the entire cohort at one, two, and five years were 66%, 38%, and 18%, respectively. In the ECOG PS 0 subgroup, OS estimates at one, two, and five years were 85%, 52%, and 24%, respectively; OS estimates were 60%, 35%, and 17%, respectively, for ECOG PS 1−2 and were 47%, 23%, and 10%, respectively, for ECOG PS 3−4. OS was significantly higher among patients with normal serum sodium and hemoglobin levels than those with abnormal levels. Univariable hazard regression models found that ECOG PS, age at diagnosis, receipt of prophylactic cranial irradiation (PCI), and thoracic RT were associated with survival. On multivariable hazard regression, ECOG PS and receipt of PCI were associated with survival. Conclusion Survival for greater than two years in patients with LS-SCLC treated with CT ± RT was associated with ECOG PS and receipt of PCI.


Real‐world experience of tyrosine kinase inhibitors in children, adolescents and adults with relapsed or refractory bone tumours: A Canadian Sarcoma Research and Clinical Collaboration ( CanSaRCC ) study

September 2023

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80 Reads

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5 Citations

Objectives We conducted a retrospective multi‐centre study to assess the real‐world outcome of regorafenib (REGO) and cabozantinib (CABO) in recurrent/refractory bone tumours (BTs) including osteosarcoma (OST), Ewing sarcoma (EWS) and chondrosarcoma (CS)/extra‐skeletal mesenchymal CS (ESMC). Methods After regulatory approval, data from patients with recurrent BT (11 institutions) were extracted from CanSaRCC (Canadian Sarcoma Research and Clinical Collaboration) database. Patient characteristics, treatment and outcomes were collected. Progression‐free survival (PFS) and overall survival (OS) were estimated using the Kaplan–Meier method. Results From July 2018 to May 2022, 66 patients received REGO or CABO; 39 OST, 18 EWS, 4 CS and 5 ESMC. Median age was 27.8 years (range 12–76); median starting dose was 60 mg for CABO ( n = 37, range 40–60) and 120 mg for REGO ( n = 29, range 40–160). Twenty‐eight (42.4%) patients required dose reduction: hand‐foot syndrome 7 (10.6%), nausea/vomiting 1 (1.5%), diarrhoea 1 (1.5%), 2 elevated LFTs (3%), elevated bilirubin 1 (1.5%) and mucositis 1 (1.5%). The median OS for patients with OST, EWS, CS and ESMC was 8.5 months ( n = 39, 95% CI 7–13.1); 13.4 months ( n = 18, 95% CI 3.4–27.2), 8.1 ( n = 4, 95% CI 4.1–9.3) and 18.2 ( n = 5, 95% CI (10.4–na), respectively. Median PFS for OST, EWS, CS and ECMS was 3.5 ( n = 39, 95% CI 2.8–5), 3.9 ( n = 18, 95% CI 2.1–5.9), 5.53 ( n = 4. 95% CI 2.13–NA) and 11.4 ( n = 5, 95% CI 1.83–14.7), respectively. Age, line of therapy, REGO versus CABO, or time from diagnosis to initiation of TKI were not associated with PFS on univariable analysis. Conclusion Our real‐world data show that TKIs have meaningful activity in recurrent BT with acceptable toxicities when started at modified dosing. Inclusion of TKIs in earlier lines of treatment and/or maintenance therapy could be questions for future research.


Real-world predictors of survival in patients with extensive-stage small-cell lung cancer in Manitoba, Canada: a retrospective cohort study

September 2023

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62 Reads

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5 Citations

Background Extensive-stage small-cell lung cancer (ES-SCLC) is an incurable cancer with poor prognosis in which characteristics predictive of long-term survival are debated. The utility of agents such as immune checkpoint inhibitors highlights the importance of identifying key characteristics and treatment strategies that contribute to long-term survival and could help guide therapeutic decisions. Objective This real-world analysis examines the characteristics, treatment patterns, and clinical outcomes of patients receiving chemotherapy without immunotherapy for ES-SCLC in Manitoba, Canada. Methods A retrospective cohort study assessed patient characteristics, treatment, and survival duration (short: <6 months; medium: 6–24 months; long: >24 months) using the Manitoba Cancer Registry and CancerCare Manitoba records. Eligible patients were aged >18 years with cytologically confirmed ES-SCLC diagnosed between January 1, 2004, and December 31, 2018, and received cytotoxic chemotherapy (CT). The one-, two-, and five-year probabilities of overall survival (OS) were assessed relative to patient, disease, and treatment characteristics using Kaplan-Meier methods and Cox proportional hazards models. Results This analysis included 537 patients. Cisplatin was used in 56.1% of patients, 45.6% received thoracic radiotherapy (RT), and few received prophylactic cranial irradiation (PCI). In the overall cohort, one-, two- and five-year OS rates were 26%, 8%, and 3%, respectively. For patients with Eastern Cooperative Oncology Group Performance Status (ECOG PS) 0, OS rates at one, two, and five years were 43%, 17%, and 10%, respectively, vs. 27%, 8%, and 2% for those with ECOG PS 1–2, and 16%, 3%, and 3% for those with ECOG PS 3–4. In long-term survivors, ECOG PS scores were lower and abnormal laboratory test results were less frequent. Overall, 74.4% of long-term survivors received thoracic RT and 53.5% received PCI. Known poor prognostic factors – including brain/liver metastases, high lactate dehydrogenase (LDH), abnormal sodium, and low hemoglobin levels – were less common but still seen in long-term survivors. Conclusion Although rare, patients with ES-SCLC may experience long-term survival with CT ± thoracic RT ± PCI. Factors predicting long-term survival include traditional prognostic factors such as ECOG PS, LDH level, and receipt of thoracic RT or PCI. These findings support current treatment algorithms for ES-SCLC and provide baseline survival estimates to assess the real-world impact of adding immune checkpoint inhibitors in the future.


Citations (28)


... KRAS-mutated NSCLC has a higher TMB, and some patients exhibited increased PD-1 expression, leading to a better response to immunotherapy compared with other oncogenes. Previous studies have explored the impact of ICIs on the prognosis of patients with advanced KRAS-mutated NSCLC, but several retrospective studies have shown contradictory results due to population heterogeneity [12,[22][23][24]. Erica et al. analyzed data from 12 registered clinical trials to investigate the efficacy of first-line ICIs monotherapy or in combination with chemotherapy in patients with a clear KRAS status (mutated or wild-type), finding that patients with KRAS-mutated NSCLC could benefit from ICIs as monotherapy or in combination with chemotherapy, possibly related to other factors in the tumor microenvironment, such as tumor-infiltrating lymphocytes and the secretion of cytokines [13]. ...

Reference:

PD-1/L1 immune checkpoint inhibitors for KRAS-mutant non-small cell lung cancer: a multicenter retrospective real-world study
Treatment patterns and outcomes in KRAS‐positive advanced NSCLC patients previously treated with immune checkpoint inhibitors: A Canada-wide real-world, multi-center, retrospective cohort study
  • Citing Article
  • July 2024

Lung Cancer

... Beyond the physical health challenges, young patients aged 15-39 years often face additional issues such as psychological distress and concerns about fertility. The diagnosis and treatment of cancer can lead to anxiety, depression, and even other mental health issues such as suicide [5], posing unique challenges for adolescents and young adults (AYAs) during their critical developmental phases. Moreover, cancer treatment can potentially affect reproductive health, raising concerns about future fertility [6,7]. ...

Mental Disorders Among Adolescents and Young Adults With Cancer: A Canadian Population-Based and Sibling Cohort Study
  • Citing Article
  • February 2024

Journal of Clinical Oncology

... In the same trial, it was determined that Regorafenib Regorafenib, or BAY 73-4506, is an orally administered TKI that targets mainly VEGFR1, VEGFR2, and VEGFR3 as well as RET, FGFR1, PDGFRβ and KIT [63]. In a phase II trial that assessed the efficacy and safety of regorafenib in the treatment of ES patients, the subset of patients that received regorafenib had a PFS of 11.4 weeks, compared to 3.9 weeks for patients who were given placebo, with 56% of the patients who received regorafenib experiencing serious AEs [64], with a different study providing similar results [62]. In another study assessing regorafenib in Ewing's family of tumors, it was reported that patients achieved a PFS of 14.8 weeks, an objective response rate of 11% and an OS of 53 weeks, also the toxicity profile was acceptable [65]. ...

Real‐world experience of tyrosine kinase inhibitors in children, adolescents and adults with relapsed or refractory bone tumours: A Canadian Sarcoma Research and Clinical Collaboration ( CanSaRCC ) study

... ECOG PS, referring to a measure of functional status, has been used as an independent predictive factor, with higher scores being associated with poorer outcomes. ECOG PS 1-2 patients had a medium-term survival rate of 68.1% and a long-term survival rate of 65.1%, while ECOG PS 3-4 patients had a medium-term survival rate of 18.1% and a long-term survival rate of 0% (15). Another study also demonstrated that patients with PS 2-3 showed significantly poorer OS compared to patients with PS 0-1 (16). ...

Real-world predictors of survival in patients with extensive-stage small-cell lung cancer in Manitoba, Canada: a retrospective cohort study

... In comparison, we found a mToT of 20.0 months (alectinib), 11.1 months (brigatinib), and 7.4 months (crizotinib), which corresponds to findings from a population-based study from Denmark (12). A North American study investigating time on lorlatinib as second line treatment for ALK+ patients (28) found comparable results to our study, with mToT of 15.3 months for lorlatinib in second line. In the PROFILE 1001 (29), the reported mPFS for crizotinib in ROS1+ patients was 19.3 months, compared to a mToT of 5 months in our study. ...

Lorlatinib Effectiveness and Quality-of-Life in Patients with ALK-Positive NSCLC Who Had Failed Second-Generation ALK Inhibitors: Canadian Real-World Experience

... Unsupervised clustering of large-scale, multidimensional metabolomics data has been used to group diseased and healthy individuals by common metabolic patterns and provide insights into their underlying physiology 1,9,32,[70][71][72] . In our study, subjects' metabolomes tended to cluster into two overlapping groups which did not obviously correspond to any of our metadata categories (i.e., sex, age, smoking, state of residence, etc.). ...

Data-driven identification of plasma metabolite clusters and metabolites of interest for potential detection of early-stage non-small cell lung cancer cases versus cancer-free controls

Cancer & Metabolism

... PCR assays, renowned for their rapid turnaround and sensitivity, are broadly accessible [22]. However, due to the high variability in EGFR exon 20 insertion mutations, conventional PCR techniques often fail to detect more than 50% of these mutations, underscoring the critical role of NGS in identifying such genetic anomalies [23]. Typically, PCR kits are calibrated only for the most common EGFR mutations, contributing to the notable under-detection of exon 20 insertion variants. ...

Consensus Recommendations to Optimize Testing for New Targetable Alterations in Non-Small Cell Lung Cancer

... They could serve as indicators of the occurrence of infectious illnesses. [4][5][6][7][8][9] Moreover, disease monitoring allowed researchers to ascertain seasonal or cyclical patterns in the incidence of the condition as well as if it was growing or decreasing. The effectiveness of an intervention in reducing the number of incidents before and after implementation may be ascertained by intervention evaluation. ...

Transitions between versions of the International Classification of Diseases and chronic disease prevalence estimates from administrative health data: a population-based study

BMC Public Health

... In fact, the median age of near 80 years old, together with the unusually high percentage of squamous histology and the prevalence of current or former smokers, limited the use of more toxic combinations as those platinum-based. The median number of serious comorbidities overlaps with other reports in locally advanced or metastatic settings [18,19]; in our population, smoking-related conditions such as hypertension, COPD, heart disease and cerebral or peripheral vascular disease presented with a high incidence, and these comorbid illnesses are of particular concern for clinicians, and so their presence influenced the decision of not to deliver platinum. The study participating centers were both non-teaching and university hospitals, set on urban and rural areas and spread throughout Italy, so data cannot be influenced by hospital type, and describe the real prescribing attitude of physicians. ...

The impact of the modified frailty index on clinical outcomes for patients with stage IV non-small cell lung cancer receiving chemotherapy
  • Citing Article
  • March 2022

Journal of Geriatric Oncology

... 8 With the progress of immunotherapy, immune checkpoint inhibitors have shown outstanding efficacy in MPM. 4,9,10 The combination of nivolumab and ipilimumab has become a viable first-line option in patients with MPM; especially in those patients with non-epithelioid histologies. 11,12 To date, although surgical resection, chemotherapy and immunotherapy have made clear progress, 3,13 the prognosis and survival of patients with MPM remains poor. ...

The Role of Immunotherapy in the Treatment of Malignant Pleural Mesothelioma