Ruslana Radchuk’s research while affiliated with Leibniz Institute of Plant Genetics and Crop Plant Research and other places

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Publications (53)


Trehalose 6‐phosphate (T6P) promotes reserve starch accumulation and cotyledon differentiation in pea. (a) The relationship between the concentration of T6P and the accumulation of sucrose and starch in wild‐type (WT) embryos over a period from 8 to 28 d after pollination (DAP). The error bars indicate the standard error of the mean (SEM) (n = 5). (b) The appearance of mature seeds formed by USP:TPP #3 and the corresponding WT plants. Bar, 1 cm. (c, d) Starch (c) and sucrose (d) concentrations in growing USP:TPP and WT embryos. Error bars indicate SEM (n = 25): *, P ≤ 0.001 (Student's t‐test). (e) Iodine staining of starch granules in 22‐d‐old embryos harvested from USP:TPP #3 plants and corresponding WT plants. Bars, 500 µm. (f, g) Length (f) and FW (g) of developing USP:TPP and WT embryos. Values are means ± SEM (n = 5 (f), n = 25 (g): *, P ≤ 0.05 (Student's t‐test). (h) Quantitative nuclear magnetic resonance imaging of transverse relaxation time (T2) in living USP:TPP #3 and WT cotyledons at 26 DAP. The three‐dimensional scheme on the right indicates the virtual cross‐section plane used for visualization. T2 values are color‐coded.
The effect of heterologous trehalose 6‐phosphate phosphatase (TPP) expression on adenosine diphosphate glucose pyrophosphorylase (AGP) activity and transcript abundances of the corresponding genes. (a, b) The levels of adenosine diphosphate glucose (ADPG) (a) and AGP activity (b) in maturing USP:TPP and wild‐type (WT) embryos. Values are means ± SEM (n = 25): *, P ≤ 0.001 (Student's t‐test). (c) Relative abundance of AGPL, AGPS1 and AGPS2 transcripts in USP:TPP and WT embryos over a period from 14 to 26 d after pollination (DAP). Values are means ± SEM (n = 10): *, P ≤ 0.05; **, P ≤ 0.01; ***, P ≤ 0.001 (Student's t‐test); ns; not significant.
Expression of trehalose 6‐phosphate phosphatase (TPP) affects auxin synthesis in developing pea embryos. (a) Relative abundance of TAR2 transcripts in 14‐ to 26‐d‐old USP:TPP and wild‐type (WT) embryos. Error bars denote upper and lower limits of SEM (n = 10): *, P ≤ 0.05; ***, P ≤ 0.001 (Student's t‐test); ns, not significant. (b) The photographs show dry seeds harvested from TAR2 (Cameor × Erbi), USP:TPP #1/TAR2, USP:TPP #1/tar2‐1, and tar2‐1 (Cameor × Erbi) plants. Bar, 1 cm. (c) Auxin concentrations in growing USP:TPP and WT embryos. Values are means ± SEM (n = 9): *P ≤ 0.05 (Student's t‐test); ns, not significant. (d) Concentrations of 4‐Cl‐tryptophan (4‐Cl‐Trp) in 26‐d‐old USP:TPP and WT embryos. Values are means ± SEM (n = 9). Significant difference according to Student's t‐test: *, P ≤ 0.05. (e) The content of trehalose 6‐phosphate (T6P) in 22‐d‐old tar2‐1 and WT embryos. Values are means ± SEM (n = 6): *, P ≤ 0.001 (Student's t‐test). (f) The seed phenotype of hybrids between USP:TPP and USP:TAR2 plants. The photographs present dry seeds from plants harboring USP:TPP#3, USP: TPP#3/USP:TAR2#3 and the empty vector control. Bars, 1 cm. (g) The appearance of 22‐d‐old embryos developing on USP:TPP #3, USP:TPP #3/USP:TAR2 #3, and empty vector plants. Bars, 1 mm.
Expression of trehalose 6‐phosphate synthase (TPS) induces starch and auxin synthesis in developing pea embryos. (a) The level of adenosine diphosphate glucose‐pyrophosphorylase (AGP) activity in 18‐ to 26‐d‐old USP:TPS and wild‐type (WT) embryos (n = 15): *, P ≤ 0.05 (Student's t‐test). (b) Relative transcript abundances of TAR2 in embryos formed by USP:TPS and corresponding WT plants. Transcript abundances are means ± SEM (n = 8): *, P ≤ 0.05; **, P ≤ 0.01 (Student's t‐test). (c) Auxin accumulation in growing USP:TPS and WT embryos. Values are means ± SEM (n = 9): *, P ≤ 0.05 (Student's t‐test); ns, not significant.
A simplified model of the trehalose 6‐phosphate (T6P)–auxin signaling pathway regulating embryo maturation in pea. (1) During the transition from early pattern formation to seed filling, maternally delivered sucrose accumulates in the embryo, raising the concentration of T6P. (2) Activation of T6P signaling is required for the expression of TAR2 and for the increased synthesis of 4‐Cl‐IAA from 4‐Cl‐Trp. (3) A rise in the concentration of 4‐Cl‐IAA derepresses auxin‐responsive genes by promoting the ubiquitin‐mediated release of the AUX/IAA repressor from ARF via the activation of the Aux/IAA‐SCFTIR1 coreceptor system. (4) The transcriptional activation of starch synthesis genes, in particular AGPL, is necessary for normal starch accumulation, while certain as yet unidentified target genes regulate cotyledon growth via the stimulation of cell proliferation. Together, these processes act to efficiently allocate the incoming sucrose within the differentiating embryo and to ensure continuous growth and optimal filling of the maturing seed. 4‐Cl‐IAA, 4‐Cl‐indole‐3‐acetic acid; 4‐Cl‐Trp, 4‐Cl‐tryptophan; ADPG, adenosine diphosphate‐glucose; AGP, ADPG pyrophosphorylase; ARE, auxin‐responsive element; ARF, auxin response factor; F6P, fructose 6‐phosphate; Fru, fructose; G1P, glucose 1‐phosphate; G6P, glucose 6‐phosphate; Suc, sucrose; T6P, trehalose 6‐phosphate; TPP, T6P phosphatase, TPS, T6P synthase; Tre, trehalose; Ub, ubiquitin.
Trehalose 6‐phosphate promotes seed filling by activating auxin biosynthesis
  • Article
  • Full-text available

October 2020

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1,194 Reads

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81 Citations

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Ruslana Radchuk

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Erin L. McAdam

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[...]

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Plants undergo several developmental transitions during their life cycle. One of these, the differentiation of the young embryo from a meristem‐like structure into a highly specialized storage organ, is believed to be controlled by local connections between sugars and hormonal response systems. However, we know little about the regulatory networks underpinning the sugar–hormone interactions in developing seeds. By modulating the trehalose 6‐phosphate (T6P) content in growing embryos of garden pea (Pisum sativum), we investigate here the role of this signaling sugar during the seed‐filling process. Seeds deficient in T6P are compromised in size and starch production, resembling the wrinkled seeds studied by Gregor Mendel. We show also that T6P exerts these effects by stimulating the biosynthesis of the pivotal plant hormone, auxin. We found that T6P promotes the expression of the auxin biosynthesis gene TRYPTOPHAN AMINOTRANSFERASE RELATED2 (TAR2), and the resulting effect on auxin concentrations is required to mediate the T6P‐induced activation of storage processes. Our results suggest that auxin acts downstream of T6P to facilitate seed filling, thereby providing a salient example of how a metabolic signal governs the hormonal control of an integral phase transition in a crop plant.

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Figure 3. Expression of TPP affects auxin synthesis in developing pea embryos. (A) Relative
Trehalose 6-phosphate Controls Seed Filling by Inducing Auxin Biosynthesis

August 2019

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175 Reads

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2 Citations

Plants undergo several developmental transitions during their life cycle. One of these, the differentiation of the young embryo from a meristem-like structure into a highly-specialized storage organ, is vital to the formation of a viable seed. For crops in which the seed itself is the end product, effective accumulation of storage compounds is of economic relevance, defining the quantity and nutritive value of the harvest yield. However, the regulatory networks underpinning the phase transition into seed filling are poorly understood. Here we show that trehalose 6-phosphate (T6P), which functions as a signal for sucrose availability in plants, mediates seed filling processes in seeds of the garden pea, a key grain legume. Seeds deficient in T6P are compromised in size and starch production, resembling the wrinkled seeds studied by Gregor Mendel. We show also that T6P exerts these effects by stimulating the biosynthesis of the pivotal plant hormone, auxin. We found that T6P promotes the expression of the auxin biosynthesis gene TRYPTOPHAN AMINOTRANSFERASE RELATED2 (TAR2), and the resulting effect on auxin levels is required to mediate the T6P-induced activation of storage processes. Our results suggest that auxin acts downstream of T6P to facilitate seed filling, thereby providing a salient example of how a metabolic signal governs the hormonal control of an integral phase transition in a crop plant.





Figure 2. Temporal and spatial expression patterns of Jek genes and the cytotoxic nature of their proteins. (a) Northern blot analysis of Jek1, Jek2 and Jek3 gene expression in the developing barley grains of cv. Barke (Jek1) and cv. Morex (Jek2 and Jek3). The loading control used a 25S rDNA probe. (b) The influence of Jek1, Jek2 and Jek3 recombinant proteins on the growth of E. coli cells. Values are means (AESD) of five replicates. (c) The barley grain at the mid developmental stage. The red dashed line indicates the plane of the cross-sections used for in situ hybridization sample preparation, and the red rectangle indicates the region shown in (dg). (d-g) In situ hybridization with antisense Jek3 as probe shows that Jek3 is strongly transcribed in the nucellar projection at (d) six and (f) 8 days after flowering; (e-g) negative control experiments for, respectively, (d) and (f), using sense Jek3 as probe. Bar: 100 lm. em, embryo; es, endosperm; DAF, days after flowering; OD 600 , optical density at 600 nm; np, nucellar projection; pe, pericarp; tc, endosperm transfer cell; vt, vascular tissue.
Figure 3. The complementation of Jek1 by Jek3. (a) -(c) Reciprocal hybrids between cv. Morex (Jek3) and line N91 (Jek1 knock-down line) carry Jek1 (a), the intron from the RNAi construct used to knock down Jek1 (b) and Jek3 (c). (d) Expression of Jek1, Jek2 and Jek3 in grains of cv. Golden Promise, line N91, cv. Morex and N91 9 cv. Morex hybrid, correspondingly. (e) The weight of 100 grains of cv. Morex, cv. Golden Promise, line N91 and the reciprocal cv. Morex 9 line N91 F1 hybrids. Each data is the mean (AESD; n = 7); different letters associated with a column indicate statistically significant (P < 0.001) differences at upon pair-wise comparisons in a logistic regression.
Figure 4. Natural nucleotide diversity at Jek1 and Jek3. (a, b) Median-joining networks for Jek1 (a) and Jek3 (b). (c, d) Haplotype diversity at the peptide level for Jek1 (c), Jek3 (d). The single nucleotide deletion distinguishing J1-H1 from J1-H2 haplotypes is shown by a green triangle. The signal peptide (boxed in blue) and the six conserved cysteine residues (boxed in red) are present in all the haplotypes. The direct repeats at the C-termini of Jek1 and Jek3 are indicated by blue arrows. (e) Geographical provenance of Jek1 and Jek3 among wild barley accessions. (f) Geographical provenance of Jek1 and Jek3 among domesticated barley accessions.
Figure 5. The distribution of Jek-like sequences in species of the grass tribes Triticeae and Bromeae. (a) Southern blot hybridization of genomic DNA extracted from species of the tribes Triticeae (left-hand panel) and Bromeae (right-hand panel), using Jek1/Jek3 conserved region as the probe. (b) Bootstrap consensus tree of Jekyll protein sequences from selected Triticeae species. The maximum-likelihood method was used to construct this tree with 1000 replicate bootstrap support. The variants found in barley cv. Barke and Morex are indicated in red, those present in Ae. speltoides in blue and three Jek homeologs present in one bread wheat genotype in bold. (c-e) Comparison of the deduced amino acid sequences of Jek1 (c), Jek3 (d) and Jek2 (e) from selected Triticeae species. The signal peptide (boxed in black) and the six cysteine residues (boxed in red) are present in each of the Jek1/Jek3 sequences. C-terminal repeats are indicated by blue arrows. Asp, Aegilops speltoides; Ata, Aegilops tauschii; Acr, Agropyron sristatum; Evi, Elymus villosus; Hvu, Hordeum vulgare; J1, Jek1; J2, Jek2; J3, Jek3; Sce, Secale cereale; Tae, Triticum aestivum; Tar, T. araraticum; Tbo, T. boeoticum; Tdi, T. dicoccum; Tds, T. dicoccoides.
The highly divergent Jekyll genes, required for sexual reproduction, are lineage specific for the related grass tribes Triticeae and Bromeae

April 2019

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338 Reads

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13 Citations

The Plant Journal

Phylogenetically‐related groups of species contain lineage‐specific genes, which exhibit no sequence similarity to any genes outside of the lineage. We describe here that the Jekyll gene, required for sexual reproduction, exists in two much diverged allelic variants, Jek1 and Jek3. Despite low similarity, the Jek1 and Jek3 proteins share identical signal peptides, conserved cysteine positions and direct repeats. The Jek1/Jek3 sequences are located at the same chromosomal locus and inherited by monogenic Mendelian fashion. Jek3 has similar expression as Jek1 and complements the Jek1 function in Jek1‐defficient plants. Jek1 and Jek3 allelic variants were almost equally distributed in a collection of 485 wild and domesticated barley accessions. All domesticated barleys harboring the Jek1 allele belong to single haplotype J1‐H1 indicating a genetic bottleneck during domestication. Domesticated barleys harboring the Jek3 allele consisted of three haplotypes. Jekyll‐like sequences were found only in species of the closely related tribes Bromeae and Triticeae but not in other Poaceae. Non‐invasive magnetic resonance imaging revealed intrinsic grain structure in Triticeae and Bromeae, associated with the Jekyll function. The emergence of Jekyll suggests its role in separation of the Bromeae and Triticeae lineages within the Poaceae and identifies the Jekyll genes as lineage‐specific. This article is protected by copyright. All rights reserved.


Vacuolar processing enzyme 4 contributes to maternal control of grain size in barley by executing programmed cell death in the pericarp

August 2017

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86 Reads

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29 Citations

The angiosperm embryo and endosperm are limited in space because they grow inside maternal seed tissues. The elimination of cell layers of the maternal seed coat by programmed cell death ( PCD ) could provide space and nutrition to the filial organs. Using the barley ( Hordeum vulgare L.) seed as a model, we elucidated the role of vacuolar processing enzyme 4 ( VPE 4) in cereals by using an RNA i approach and targeting the enzymatic properties of the recombinant protein. A comparative characterization of transgenic versus wild‐type plants included transcriptional and metabolic profiling, flow cytometry, histology and nuclear magnetic imaging of grains. The recombinant VPE 4 protein exhibited legumain and caspase‐1 properties in vitro . Pericarp disintegration was delayed in the transgenic grains. Although the VPE 4 gene and enzymatic activity was decreased in the early developing pericarp, storage capacity and the size of the endosperm and embryo were reduced in the mature VPE 4‐repressed grains. The persistence of the pericarp in the VPE 4‐affected grains constrains endosperm and embryo growth and leads to transcriptional reprogramming, perturbations in signalling and adjustments in metabolism. We conclude that VPE 4 expression executes PCD in the pericarp, which is required for later endosperm filling, and argue for a role of PCD in maternal control of seed size in cereals.





Citations (33)


... Thus, the regulation of starch and sucrose metabolism, including the pentose and gluconate pathways, is vital for their production 23 . At 28 days after anthesis (DAA), UDP-glucose and G6P levels increased in the Yousef genotype, as essential precursors for Trehalose-6 Phosphate (T6P) production which was then consistence with the correlation between T6P synthase and remobilization efficiency level indicating its role as a signalling molecule that links carbon availability to seed development 24,25 . ...

Reference:

Integrated proteome and metabolome analysis of the penultimate internodes revealing remobilization efficiency in contrasting barley genotypes under water stress
Trehalose 6‐phosphate promotes seed filling by activating auxin biosynthesis

... On the other hand, TPS gene expression was downregulated after application of florpyrauxifen-benzyl or quinclorac to drought-stressed plants. We propose that, in water deficit, the action of TPS is inhibited by the auxinic herbicides, because there is interaction between auxin and the signaling sugar T6P synthetized by TPS [95]. In high auxin concentrations, TPS is inhibited, thereby affecting the sucrose status and normal plant growth [96][97][98][99]. ...

Trehalose 6-phosphate Controls Seed Filling by Inducing Auxin Biosynthesis

... Total genomic DNA was extracted from the samples and PCR amplified with HvSWEET11b-specific primers (Supplemental Data Set S6) as described (Radchuk et al., 2019). The amplicons were cleaned ...

The highly divergent Jekyll genes, required for sexual reproduction, are lineage specific for the related grass tribes Triticeae and Bromeae

The Plant Journal

... In previous studies, SUT4 was reported with putative deletions in Rio (Cooper et al. 2019); our de novo transcriptome assembly analysis with 223 RNA-seq accessions reported its presence, suggesting that SUT4 is present in the sweet sorghum population. Several SUT genes were reported in maize (4-7) (Leach et al. 2017), rice (5) (Aoki et al. 2003;Hirose et al. 2010), wheat (4) (Deol et al. 2013), and barley (5) (Radchuk et al. 2017) with a variety of functions in growth and development. To date, 23 SWEET genes were reported in the sweet sorghum (Mizuno et al. 2016); however, SSRG reported only 21 SWEET genes, along with two with putative deletions, namely SWEET3-3 and SWEET8-2; but we reported 24 orthologs using a superTranscriptome-based approach. ...

Down-regulation of the sucrose transporters HvSUT1 and HvSUT2 affects sucrose homeostasis along its delivery path in barley grains

Journal of Experimental Botany

... Cysteine proteases, including papainlike C1A and legumains (C13), are key players in these processes [18,19]. They also assist in programmed cell death, senescence, nutrient remobilization under stress, and giving responses to pathogens [20,21]. Industrially, proteases like papain have been utilized in the food, pharmaceutical, detergent, and biofuel industries for decades [22]. ...

Vacuolar processing enzyme 4 contributes to maternal control of grain size in barley by executing programmed cell death in the pericarp

... Analysis of iAGP-3 seeds along with other seed models (for review, see Weigelt et al., 2008; Weber et al., 2009) reveals that legume seeds are potentially C and N limited with respect to storage protein synthesis . However, the comprehensive analysis of metabolic alterations reveals specific mechanisms that can be activated to adjust the C-N ratio, indicating that C-N balances, rather than levels of N or C per se, are important for efficient seed maturation. ...

Changing Metabolic Pathways to Manipulate Legume Seed Maturation and Composition
  • Citing Chapter
  • January 2009

... such as buckwheat can accumulate more proline to cope with the adverse effects of water shortage (Yao et al., 2017). Certainly, the rapid response and changes in hormone levels are also important regulatory means, and the rapid increase in abscisic acid content in barley leaves under water deficit inhibits leaf transpiration and water transport in the root system; thus, early maturation of barley is induced without altering grain composition-proper grain development is ensured and maintained (Staroske et al., 2016). In vivo, 1-aminocyclopropane-1-carboxylate deaminase (ACC deaminase) mitigates the negative effects of water deficiency by reducing ethylene levels and increasing relative water content of lentils (Zafar-ul-Hye et al., 2021). ...

Increasing abscisic acid levels by immunomodulation in barley grains induces precocious maturation without changing grain composition
  • Citing Article
  • March 2016

Journal of Experimental Botany

... In 2010, the release of 5000 expressed sequence tags (ESTs) from the developing embryos of the broad bean variety "Windsor" represent the first significant contribution to the faba bean transcriptome (Ray and Georges 2010). The high transcriptome coverage produced came from Illumina sequencing of a library of mixed tissues ameliorate with embryo cells (Zhang et al. 2015). Construction of a comparative genetic map is an important discovery that is the foundation of a genetic map composed completely of sequence-based markers (Ellwood et al. 2008a, b), with the related model plants (e.g. ...

Differential transcriptional networks associated with key phases of ingrowth wall construction in trans-differentiating epidermal transfer cells of Vicia faba cotyledons

BMC Plant Biology

... One of the most important biochemical characteristics of PCD is the degradation of nuclear DNA, which can produce 3 -OH ends resulting from DNA cleavage [51][52][53][54][55][56][57][58][59]. Another biochemical characteristic of PCD is the activation of caspase-like protein activity [5,[10][11][12][13][14]16,60,61]. Although no HR has been identified in seaweeds infected by pathogenic bacteria, PCD has been observed in seaweeds after such infection. ...

Caspase-Like Activities Accompany Programmed Cell Death Events in Developing Barley Grains

... It has 5-8% protein, 1-2% ether extractives, 65-75% carbohydrates, 15-20% dietary fiber and 2.5-3.5% minerals. Finger millet has the greatest calcium (344 mg 100 g -1 ) and potassium content (408 mg 100 g -1 ) of all the grains and millets (Kumar et al 2016, Reddy et al 2008, Radchuk et al 2012, Gupta et al 2017. This cereal is low-fat (1.3%) and is mainly unsaturated fat. ...

A somaclonal line SE7 of finger millet (Eleusina coracea) exhibits modified cytokinin homeostasis and increased grain yield

Journal of Experimental Botany