Rui Li’s research while affiliated with Nanjing Medical University and other places

What is this page?


This page lists works of an author who doesn't have a ResearchGate profile or hasn't added the works to their profile yet. It is automatically generated from public (personal) data to further our legitimate goal of comprehensive and accurate scientific recordkeeping. If you are this author and want this page removed, please let us know.

Publications (148)


Structure of the classical detection model fast-cnns. Convolutional layers are used to computationally obtain different feature maps, the convolutional layers located at the beginning of the network architecture are used to detect low-level semantic features such as edges and curves, while the convolutional layers located deeper into the model architecture are used to learn more abstract semantic features. An activation function is applied to the convolution results to obtain a feature map. The pooling layer serves to reduce the computational burden on the network by decreasing the spatial dimensions of the feature map and the number of parameters in the network without losing information. By stacking several convolutional and pooling layers, feature maps with high-level semantic information can be obtained gradually. One or more fully connected layers follow the convolutional and pooling layers for integrated extraction of features to enhance the feature representation of the model. In a convolutional neural network, each neuron of the feature map is connected to the region of a neighboring neuron in the previous layer, such a neighborhood is called the neuron’s receptive field. When generating a feature map at a certain level, the convolution kernel of that level is shared by all spatial locations of the input, and this weight sharing can effectively reduce the parameters of the network and reduce the risk of overfitting of the network. Complete feature information is obtained by setting different convolution kernels at different levels. The last layer of the convolutional neural network is the output layer, which can usually be used to obtain the best parameters for a particular task and output predictions by minimizing the loss function defined on that task. (Endoscopic gastric mucosal morphology was obtained from the First Affiliated Hospital of Soochow University, with written informed consent from the patient and a statement of consent for publication.) (Figure drawing by Visio 2024).
Artificial intelligence-assisted diagnosis of early gastric cancer: present practice and future prospects
  • Literature Review
  • Full-text available

February 2025

·

5 Reads

Changda Lei

·

Wenqiang Sun

·

Kun Wang

·

[...]

·

Rui Li

Gastric cancer (GC) occupies the first few places in the world among tumors in terms of incidence and mortality, causing serious harm to human health, and at the same time, its treatment greatly consumes the health care resources of all countries in the world. The diagnosis of GC is usually based on histopathologic examination, and it is very important to be able to detect and identify cancerous lesions at an early stage, but some endoscopists’ lack of diagnostic experience and fatigue at work lead to a certain rate of under diagnosis. The rapid and striking development of Artificial intelligence (AI) has helped to enhance the ability to extract abnormal information from endoscopic images to some extent, and more and more researchers are applying AI technology to the diagnosis of GC. This initiative has not only improved the detection rate of early gastric cancer (EGC), but also significantly improved the survival rate of patients after treatment. This article reviews the results of various AI-assisted diagnoses of EGC in recent years, including the identification of EGC, the determination of differentiation type and invasion depth, and the identification of borders. Although AI has a better application prospect in the early diagnosis of ECG, there are still major challenges, and the prospects and limitations of AI application need to be further discussed.

Download

Potentiation of visualized exosomal miR-1306-3p from primary sensory neurons contributes to chronic visceral pain via spinal P2X3 receptors

February 2025

·

2 Reads

Pain

Exosomes served as “communicators” to exchange information among different cells in the nervous system. Our previous study demonstrated that the enhanced spinal synaptic transmission contributed to chronic visceral pain in irritable bowel syndrome. However, the underlying mechanism of primary sensory neuron (PSN)-derived exosomes on spinal transmission remains unclear. In this study, an exosome visualization method was established to specifically track exosomes derived from PSNs in CD63-GFP f/+ (green fluorescent protein) mice. Neonatal maternal deprivation (NMD) was adopted to induce chronic visceral pain in CD63-GFP f/+ male mice. The exosome visualization technology demonstrated that NMD increased visible PSN-derived exosomes in the spinal dorsal horn, enhanced spinal synaptic transmission, and led to visceral pain in CD63-GFP f/+ male mice. The PSN-derived exosomal miR-1306-3p sorted from spinal dorsal horn activated P2X3R, enhanced spinal synaptic transmission, and led to visceral pain in NMD mice. Moreover, upregulation of Rab27a in dorsal root ganglia mediated the increased release of PSN-derived exosomes, and intrathecal injection of siR-Rab27a reduced visible PSN-derived exosomes in spinal cord, suppressed spinal synaptic transmission, and alleviated visceral pain in NMD mice. This and future studies would reveal the detailed mechanisms of PSN-derived exosomes and provide a potential target for clinical treatment of chronic visceral pain in patients with irritable bowel syndrome.


Bland-Altman plots of agreement between the Spot Vision Screener and cycloplegia retinoscopy (CR). The dots represent individuals. The horizontal imaginary green line represents mean difference values between the two methods. The two full green lines represent upper limit and lower limit of the 95% confidence interval (95% CI). (A) Bland-Altman plots of sphere values. (B) Bland-Altman plots of cylinder values.
Receiver operating characteristic (ROC) curve for refractive results obtained by comparison between the Spot Vision Screener and CR. Colorful bold lines represent the ROC curve, the imaginary line connected by dots is used for comparison and makes no sense. Black larger circle dots were used to create the Nanjing referral criteria. (A) Hyperopia < 4 years old; (B) Myopia < 4 years old; (C) Astigmatism < 4 years old; (D) Anisometropia < 4 years old; (E) Hyperopia ≥ 4 years old; (F) Myopia ≥ 4 years old; (G) Astigmatism ≥ 4 years old; (H) Anisometropia ≥ 4 years old.
Comparison of SPOT and Cycloplegic Retinoscopy in 1103 Children
Performance Characteristics of Different Referral Criteria of the Spot Vision Screener for Detecting ARFs, VSRE and Amblyopia
Application of the 2021 AAPOS Guidelines in Clinics with Revision and Validation of SPOT Referral Criteria

January 2025

·

4 Reads

Purpose This study aims to validate and revise the Spot Vision Screener referral criteria for detecting amblyopia risk factors (ARFs), visually significant refractive error (VSRE), and amblyopia. Methods In clinics, we gathered data from children aged 12 months to 7 years. The validity of the cut-off values was assessed using receiver operating characteristic (ROC) curves, with cycloplegic retinoscopy serving as a reference. These results were compared to the age-based 2021 AAPOS diagnostic thresholds. Additionally, this study validated previously reported referral criteria within its population. Results The study involved 1103 children (347 below four years; 756 aged four years and above). We established optimal cut-off points for hyperopia, myopia, astigmatism, and anisometropia: +2.13D, −2.88D, −2.88D, and 0.88D for children under four years; +1.88D, −1.88D, −2.13D, and 0.88D for those four years and older, forming the “Nanjing Referral Criteria”. The Youden index for several existing referral criteria ranged from 0.08 to 0.53 in detecting ARFs & VSRE and from 0.08 to 0.48 for ARFs, VSRE, and amblyopia. Conclusion The study proposes the “Nanjing Referral Criteria” and its modified version with enhanced specificity for the Spot Vision Screener to optimize vision screening in children. Vision screening programs can utilize this validated data to select referral criteria best suited to their local context.


General Characteristics and Comparison Between Different Distribution Groups of Fundus Tessellation
General Characteristics and Comparison Between Different Distribution Patterns of Fundus Tessellation
The Associations Between Myopia and Fundus Tessellation in School Children: A Comparative Analysis of Macular and Peripapillary Regions Using Deep Learning

January 2025

·

9 Reads

Translational Vision Science & Technology

Purpose: To evaluate the refractive differences among school-aged children with macular or peripapillary fundus tessellation (FT) distribution patterns, using fundus tessellation density (FTD) quantified by deep learning (DL) technology. Methods: The cross-sectional study included 1942 school children aged six to 15 years, undergoing ocular biometric parameters, cycloplegic refraction, and fundus photography. FTD was quantified for both the macular (6 mm) and peripapillary (4 mm) regions, using DL-based image processing applied to 45° color fundus photographs. Eyes exhibiting tessellation were classified into two groups: the macular distribution group had greater FTD in the macular area, while the peripapillary distribution group had higher FTD in the peripapillary area, allowing for a comparative analysis of axial length (AL), corneal radius, and refraction. Results: Participants had a median age of 13 years and a median spherical equivalent (SE) of -0.75 D. The macular distribution group exhibited significantly larger AL (24.13 mm vs. 23.93 mm, P < 0.001) and more myopic refraction (-1.13 D vs. -0.75 D, P < 0.001) compared to the peripapillary group. A higher prevalence of macular-distributed FT was noted in the myopic groups (χ2 = 131.675, P < 0.001). SE negatively correlated with macular (r = -0.238) and peripapillary FTD (r = -0.195), while AL positively correlated with FTD in both regions (r = 0.308; r = 0.265) (all P < 0.001). Conclusions: The macular FT distribution pattern is significantly associated with larger AL and greater myopic refraction in school-aged children, suggesting its potential as a marker for identifying children at risk of progressing myopia. Translational relevance: DL analysis precisely identifies FT distribution patterns, potentially enhancing early detection of high-risk myopia in populations.


Hypothesis model. NCS = negative coping style; PCS = positive coping style; POS = perceived organizational support; path 1 = a*b; path 2 = a′*b′; total indirect effect: path 1 + path 2; total effect: path 1 + path 2 + c.
Model of the mediating effect of coping styles on the association between perceived organizational support and resilience. **p‐value < 0.01, values on paths are standardized path coefficients; NCS = negative coping style; PCS = positive coping style; POS = perceived organizational support.
Coping Styles Mediated the Association Between Perceived Organizational Support and Resilience in Emergency Nurses Exposed to Workplace Violence: A Cross‐Sectional Study

January 2025

·

34 Reads

·

1 Citation

Nursing and Health Sciences

Resilience was a core factor for mitigating the risks of adverse impacts of workplace violence (WPV) and may be determined by perceived organizational support (POS) and coping styles. The aim of this study was to examine the potential mediation effects of coping styles between POS and resilience in emergency nurses exposed to WPV. Participants were 670 emergency nurses (84.0% female; mean age 30.94 [SD 6.13]) reporting WPV exposure in the past 3 months. Potential mediation effects of coping styles were explored using structural equation modeling. Results showed that POS, negative coping style, and positive coping style were associated with resilience in emergency nurses exposed to WPV. Coping styles mediated the association of POS with resilience. Two indirect pathways explained 21.8% and 22.4% of the variance in nurse resilience, respectively. The findings underscore the importance of POS and coping skills in promoting resilience of emergency nurses exposed to WPV. Nurse management programs are warranted to improve the resilience of emergency nurses at the organizational and individual levels.


Effect of an α-calcium sulfate hemihydrate/treated dentin matrix composite to regenerate bone in critically sized SD rat calvarial defects

December 2024

·

11 Reads

Introduction α-Calcium sulfate hemihydrate (α-CSH) is a widely used artificial bone graft material, but it suffers from rapid deterioration and limited osteoinductivity. This study aims to develop composite cements by combining treated dentin matrix (TDM) with α-CSH to enhance osteogenic properties for the healing of bone deformities. Methods The composite cements were prepared by mixing treated dentin matrix (TDM) with α-calcium sulfate hemihydrate (α-CSH) and characterized for their mechanical, morphological, and chemical properties using a universal mechanical testing machine, scanning electron microscopy (SEM), X-ray diffraction (XRD), and Fourier-transform infrared (FTIR) spectroscopy. The biological performance was assessed by measuring osteoblast proliferation using the CCK-8 test and evaluating new bone formation in a calvarial bone defect model in rats. Results The compressive strength of the TDM/α-CSH cements decreased with increasing TDM mass ratio, while SEM analysis revealed a distinct three-dimensional porous network structure and increased surface roughness upon thorough mixing. XRD and FTIR studies confirmed the physical mixture of the two materials without phase changes. The TDM/α-CSH composites significantly stimulated osteoblast proliferation, which was dependent on the TDM content, and demonstrated superior enhancement in new bone formation as confirmed by X-ray examination and micro-CT analysis. Discussion The findings suggest that TDM/α-CSH composite cements have promising potential as an alternative for repairing bone defects due to their improved mechanical properties, osteoblast proliferation, and enhanced new bone formation in vivo. Conclusion TDM/α-CSH composite cements show potential as a novel bone graft material, offering advantages in terms of mechanical strength, osteoconductivity, and osteoinductivity, making them a viable option for bone repair applications.


Figure 1. Schematic representation of DNA methylation and demethylation processes in physiological and pathological conditions.
Figure 2. Summary schematic of neural circuits associated with visceral pain. ACC: anterior cingulate cortex; BLA: basal lateral amygdala; BNST: bed nucleus of the stria terminalis; CeA: central amygdala; CL: claustrum; HPC: hippocampus; IC: insular cortex; LC: locus coeruleus; LSV: ventral part of lateral septum; NTS: nucleus of the solitary tract; PAG: periaqueductal gray; PBN: parabrachial nucleus; PFC: prefrontal cortex; PVH: paraventricular hypothalamus; Re: reuniens; RVM: rostral ventromedial medulla; VTA: ventral tegmental area.
Advances in the pathological mechanisms and clinical treatments of chronic visceral pain

December 2024

·

20 Reads

·

1 Citation

Molecular Pain

Chronic visceral pain stems from internal organs and is frequently associated with functional gastrointestinal disorders, like irritable bowel syndrome (IBS). Since the underlying mechanisms of visceral pain remain largely unclear, clinical management is often limited and ineffective. Comprehensive research into the pathogenesis of visceral pain, along with the development of personalized therapeutic strategies, is crucial for advancing treatment options. Studies suggest that imbalances in purinergic receptors and neural circuit function are closely linked to the onset of visceral pain. In this review, we will explore the etiology and pathological mechanisms underlying visceral pain, with a focus on ion channels, epigenetic factors, and neural circuits, using functional gastrointestinal disorders as case studies. Finally, we will summarize and evaluate emerging treatments and potential initiatives aimed at managing visceral pain.


A vagus nerve dominant tetra-synaptic ascending pathway for gastric pain processing

November 2024

·

38 Reads

·

2 Citations

Gastric pain has limited treatment options and the mechanisms within the central circuitry remain largely unclear. This study investigates the central circuitry in gastric pain induced by noxious gastric distension (GD) in mice. Here, we identified that the nucleus tractus solitarius (NTS) serves as the first-level center of gastric pain, primarily via the vagus nerve. The prelimbic cortex (PL) is engaged in the perception of gastric pain. The lateral parabrachial nucleus (LPB) and the paraventricular thalamic nucleus (PVT) are crucial regions for synaptic transmission from the NTS to the PL. The glutamatergic tetra-synaptic NTS–LPB–PVT–PL circuitry is necessary and sufficient for the processing of gastric pain. Overall, our finding reveals a glutamatergic tetra-synaptic NTS–LPB–PVT–PL circuitry that transmits gastric nociceptive signaling by the vagus nerve in mice. It provides an insight into the gastric pain ascending pathway and offers potential therapeutic targets for relieving visceral pain.


Efficient and Stable Light-Emitting Diodes Enabled by Entropy-Driven Alloyed Perovskite Nanocrystals

October 2024

·

11 Reads

IEEE Electron Device Letters

Perovskite nanocrystals (PeNCs)-based light-emitting diodes (PeLEDs) are emerging as promising candidates for next-generation electroluminescent devices. However, their practical application is limited due to the poor stability of PeNCs. Here, we demonstrate an efficient and stable PeLED enabled by entropy-driven CsCd 0.1 Pb 0.8 Sr 0.1 Br 3 PeNCs as emitter. Based on density functional theory (DFT) calculations with the Compound Energy Formalism (CEF) model, the simultaneous incorporation of multiple elements increases the entropy (S) of PeNCs, thereby enhancing their stability and suppressing lattice defects. The optimized PeLED achieves a maximum external quantum efficiency (EQE) of 22.2%, dramatically surpassing that (14.1%) of the control CsPbBr 3 -based device. More importantly, the device operating lifetime reaches 10 h, 14-fold higher than that of the control LED.


AI-powered genomic mutation signature for predicting immune checkpoint inhibitor therapy outcomes in gastroesophageal cancer: a multi-cohort analysis

September 2024

·

7 Reads

Discover Oncology

Immune checkpoint inhibitors (ICIs) have significantly transformed the treatment of gastroesophageal cancer (GEC). However, the lack of reliable prognostic biomarkers hinders the ability to predict patient response to ICI therapy. In this study, we engineered and validated a genomic mutation signature (GMS) utilizing an innovative artificial intelligence (AI) algorithm to forecast ICI therapy outcomes in GEC patients. We further explored immune profiles across subtypes through comprehensive multiomics analysis. Our investigation of drug sensitivity data from the Genomics of Drug Sensitivity in Cancer (GDSC) database led to the identification of trametinib as a potential therapeutic agent. We subsequently evaluated trametinib’s efficacy in AGS and MKN45 cell lines using Cell Counting Kit-8 (CCK8) assays and clonogenic experiments. We developed a GMS by integrating 297 algorithms, enabling autonomous prognosis prediction for GEC patients. The GMS demonstrated consistent performance across three public cohorts, exhibiting high sensitivity and specificity for overall survival (OS) at 6, 12, and 18 months, as shown by Receiver Operator Characteristic Curve (ROC) analysis. Notably, the GMS surpassed traditional clinical and molecular features, including tumor mutational burden (TMB), programmed death-ligand 1 (PD-L1) expression, and microsatellite instability (MSI), in predictive accuracy. Low-risk samples exhibited elevated levels of cytolytic immune cells and heightened immunogenic potential compared to high-risk samples. Our investigation identified trametinib as a potential therapeutic agent. An inverse correlation was observed between GMS and trametinib IC50. Moreover, the high-risk-derived AGS cell line showed increased sensitivity to trametinib compared to the low-risk-derived MKN45 cell line. The GMS utilized in this study successfully demonstrated the ability to reliably predict the survival advantage for patients with GECs undergoing ICI therapy.


Citations (64)


... Similarly, modulators of voltage-gated sodium and calcium channels may help normalize neuronal excitability and motility. Emerging therapies aiming to correct chloride and mechanosensitive channel dysfunction are under investigation [81]. ...

Reference:

Irritable Bowel Syndrome: A Hallmark of Psychological Distress in Women?
Advances in the pathological mechanisms and clinical treatments of chronic visceral pain

Molecular Pain

... The peak current in the RLN injury group and the VN injury group (2 mA) was lower than that in the SLN injury group ( [3][4] mA), possibly reflecting the difference in the excitability of the residual fibers after different nerve injuries. For the recurrent laryngeal neurotomy group, despite complete dissociation of the injured nerve, central compensatory enhancement of the healthy RLN may activate bilateral vocal foldmovements via uncrossed nerve fibers (e.g., partially ipsilateral projections) or reorganization of brainstem loops (e.g., nucleus suspected-solitary fasciculus junctions) to achieve a maximal response at lower currents (2 mA) [25][26][27], whereas vagal nerve severance is accompanied by an extensive peripheral-central network disruption (including interruption of the RLN and cardiopulmonary branches) may have inhibited this compensatory efficiency [28,29], resulting in a significantly lower amplitude of movement than in the RLN injury-only group, despite the same peak current. Higher currents are required to compensate for the effect of cricothyroid muscle tone loss on vocal foldmovement after SLN injury, possibly because the SLN contains more autonomic nerve fibers that regulate tone and require higher current activation; in addition, the loss of tone in the cricothyroid muscle after SLN injury requires stronger currents to overcome the mechanical resistance, which induces a stronger activation of the remaining nerve fibers. ...

A vagus nerve dominant tetra-synaptic ascending pathway for gastric pain processing

... These materials feature tunable bandgaps, allowing for customized optical properties that enable their use across a broad range of wavelengths tailored to specific applications. Such tunability, alongside low defect density, intense photoluminescence, suitable bandgap, strong carrier mobility, and high ion conductivity, positions perovskites as excellent candidates for high-performance optoelectronic devices, including photodetectors and LEDs [34][35][36]. Perovskite solar cells have reported certified efficiencies exceeding 22%, establishing them as leading technologies in the solar energy landscape. The versatility of perovskite materials facilitates their integration into a wide array of optoelectronic devices, including solar cells, LEDs, and photodetectors. ...

Quantum‐Confined Perovskite Nanocrystals Enabled by Negative Catalyst Strategy for Efficient Light‐Emitting Diodes

... The balance between bacteria and host is disrupted at the site of periodontitis lesions. Excess ROS are produced, which activates multiple pro-inflammatory signaling pathways, leading to an increase in the ratio of M1 to M2 macrophages and the production of a large number of pro-inflammatory cytokines, such as interleukin-6 (IL-6), tumor necrosis factor-alpha (TNF-α), and interleukin-1β (IL-1β) [20][21][22]. M1 macrophages secrete pro-inflammatory cytokines to promote bone resorption and have the potential to differentiate into mature osteoclasts [23][24][25][26]. Conversely, M2 macrophages promote the differentiation of mesenchymal stem cells (MSCs) into mature osteoblasts and enhance bone mineralization [27,28]. ...

A new direction in periodontitis treatment: biomaterial-mediated macrophage immunotherapy

... Cycle-consistent generative adversarial networks (CycleGAN) have also been used to map from real to synthetic colonoscopy domains (Masahiro et al., 2022;Jeong et al., 2024). Wang et al. (2024) propose a framework based on SimCLR (Chen et al., 2020b), a contrastive self-supervised learning approach, to classify colorectal neoplasia based on the NICE classification. In Gan et al. (2023), self-distillation-based contrastive learning is employed to enhance the detection of polyps. ...

A Semi-Supervised Learning Framework for Classifying Colorectal Neoplasia Based on the NICE Classification

... MMP9, a known ECM-degrading enzyme, mediates inflammatory response and contributes to fetal membrane damage [50]. We observed an increased in MMP9 level during NEC progression, and its involvement in cancer [51], endocrine disorder [52], infection [53], and relaxin signaling [54] was noted. Interestingly, we observed a reduction in CD11A, which could accelerate neutrophil accumulation [55]. ...

Downregulation of miR‐337‐3p in hypoxia/reoxygenation neuroblastoma cells increases KCTD11 expression
  • Citing Article
  • March 2024

Journal of Biochemical and Molecular Toxicology

... Gallbladder polyps (GBPs) are a group of various abnormally proliferated tissues that protrude into the gallbladder lumen. The global incidence of GBPs ranges from 0.9 to 12.1% [1], and the incidence varies among different populations. Pathologically, GBPs include cholesterol polyps (CP), gallbladder adenomyosis, inflammatory polyps, adenomatous polyps (AP) with malignant potential, and malignant gallbladder cancers [2]. ...

Diagnosis and treatment of gallbladder polypoid lesions: Current practices and future prospects

Chinese Medical Journal

... Upregulation of integrins such as α6 and β1, driven by Feline sarcoma-related (FER) protein activity, enhances cell adhesion and reduces motility, thereby contributing to anoikis resistance [94]. Integrin beta-like 1 (ITGBL1) further promotes anoikis resistance by activating the AKT pathway, resulting in increased phosphorylated AKT levels and downregulation of Fibulin-2 (FBLN2) [95]. In breast cancer, Collagen XIII induces anoikis resistance and enhances cancer stemness by co-activating β1 integrin and the TGF-β signaling pathway [96]. ...

ITGBL1 promotes anoikis resistance and metastasis in human gastric cancer via the AKT/FBLN2 axis
  • Citing Article
  • February 2024

... This often leads clinicians to pursue aggressive therapeutic interventions, such as surgical excision, and even chemotherapy, immunotherapies and targeted treatments [3][4][5]. However, studies have shown that 43.6% (910 out of 2,085 cases in the study) to 99.6% (2,047 out of 2,055 cases in the study) of the gallbladder polyps removed during cholecystectomy are pathologically diagnosed as non-neoplastic polyps [6][7][8]. This means that the current surgical criteria may lead to unnecessary cholecystectomies [8][9][10][11]. ...

Advances in the management of gallbladder polyps: establishment of predictive models and the rise of gallbladder-preserving polypectomy procedures

BMC Gastroenterology

... Nurses with psychological resilience are inclined to leverage external resources and mobilise internal adjustments, thereby more likely to address work pressures and achieve personal growth. 17 Psychological resilience can serve as a protective factor to buffer the detrimental impacts of workplace violence on nurses' outcomes. For example, a cross-sectional study of 118 mental health nurses in Israel found that resilience acted as a protective factor to mitigate the negative impacts of workplace violence on life satisfaction among this population. ...

Perceived organizational support, self‐efficacy and cognitive reappraisal on resilience in emergency nurses who sustained workplace violence: A mediation analysis

Journal of Advanced Nursing