Rocio Zataraín-Palacios’s research while affiliated with University of Colima and other places

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Publications (5)


Proteomic Analysis of Heloderma horridum horridum Venom: Assessment to Its Transcriptome and Newfound Proteins
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July 2024

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119 Reads

Journal of Proteome Research

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Figure 2. Secondary structure of antimicrobial peptides found in toads. These peptides adopt an alpha helical conformation. They are rich in lysine residues (represented in blue) and the first amino acids interacting with bacterial membranes. Component names are in bold.
Compounds with antiviral activity from skin secretions of species that belong to the Bufonidae family and dehydrobufotenine analogs.
Antimicrobial Compounds from Skin Secretions of Species That Belong to the Bufonidae Family

February 2023

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120 Reads

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6 Citations

Skin secretions of toads are a complex mixture of molecules. The substances secreted comprise more than 80 different compounds that show diverse pharmacological activities. The compounds secreted through skin pores and parotid glands are of particular interest because they help toads to endure in habitats full of pathogenic microbes, i.e., bacteria, fungi, viruses, and protozoa, due to their content of components such as bufadienolides, alkaloids, and antimicrobial peptides. We carried out an extensive literature review of relevant articles published until November 2022 in ACS Publications, Google Scholar, PubMed, and ScienceDirect. It was centered on research addressing the biological characterization of the compounds identified in the species of genera Atelopus, Bufo, Duttaphrynus, Melanophryniscus, Peltopryne, Phrynoidis, Rhaebo, and Rhinella, with antibacterial, antifungal, antiviral, and antiparasitic activities; as well as studies performed with analogous compounds and skin secretions of toads that also showed these activities. This review shows that the compounds in the secretions of toads could be candidates for new drugs to treat infectious diseases or be used to develop new molecules with better properties from existing ones. Some compounds in this review showed activity against microorganisms of medical interest such as Staphylococcus aureus, Escherichia coli, Bacillus subtilis, Coronavirus varieties, HIV, Trypanosoma cruzi, Leishmania chagasi, Plasmodium falciparum, and against different kinds of fungi that affect plants of economic interest.


Figure 1. CGTases with different domain organizations. (A) Schematic representation of conventional fivedomain ABCDE CBM20 CGTases (blue), five-domain ABCDE arch CGTases (orange), and four-domain ABCE CBM20 CGTases (red), which are recognized by CAZy. Note that the novel group of 19 CGTases, (CldA/ThmA)-like enzymes from thermophilic C. subterraneus ssp. and Thermoanaerobacter spp., showed a three-domain ABC architecture (magenta). (B) Multiple amino acid sequence alignment of CGTases from GH13_2 with a conventional five-domain ABCDE CBM20 (blue), five-domain ABCDE arch (orange), four-domain ABCE CBM20 (red), and three-domain ABC distribution (magenta), as well as maltogenic starch-acting enzymes (white). Note the CSR I-VII motifs showing functionally critical residues (asterisk) for the GH13 family. The underline indicates the conserved acidic catalytic triad Asp x , Glu y , and Asp z from CSR II, III, and IV, respectively. The conserved aromatic central Tyr/Phe residue (green sphere) and the hydrophobic pair (Phe/Trp/Tyr)/(Phe/Tyr/Met) (H1 and H2 shadow boxes), which are essential for the cyclization activity of CGTases and to distinguish them from α-amylases are also showed 13,30,31 . The same color code is used in all other figures.
Figure 2. CldA enzymatic assay. (A) Effect of temperature (filled diamonds) and pH (empty diamonds) on CGTase activity. (B) Production of α-CD (circles), β-CD (squares) and γ-CDs (triangles) from 50 g L −1 soluble starch by the action of CldA at 75 °C and pH 4.0 for 4 h. (C) The relative production of end products from 50 g L −1 soluble starch after 2 h of reaction at 75 °C and pH 4.0. Note that G5-G7 is the sum of the linear oligosaccharides maltopentaose, maltohexaose, and maltoheptaose. The error bars indicate the standard deviation of three replicates.
Figure 3. Phylogenetic analysis of novel three-domain ABC CGTases. Evolutionary relationships were determined by the maximum likelihood method based on the WAG + G model using the full amino acid sequences of 78 CGTases, including the 48 characterized CGTases from GH13_2 recognized in the CAZy database, 19 three-domain ABC (CldA/ThmA)-like CGTases, and 11 putative CGTases. The sequences of 7 α-amylases from GH13 were used as an outgroup. The conventional five-domain ABCDE CBM20 CGTases (blue), five-domain ABCDE arch CGTases (orange), four-domain ABCE CBM20 CGTases (red), and the novel group of 19 three-domain ABC CGTases, (CldA/ThmA)-like enzymes from thermophilic C. subterraneus ssp. and Thermoanaerobacter spp. (magenta) were observed in four different clades. The ABCDE CBM20 maltogenic starch-acting enzymes (blue dashed line) and α-amylases (black branch) from GH13_2 and GH13, respectively, are also shown in two different clades. Note that while the α-amylases from Aspergillus oryzae and Cordyceps farinosa belong to the GH13_1 subfamily, the α-amylases from bacteria showed an unassigned GH13 subfamily. Bootstrap values (1000 iterations) are indicated for each node. Only bootstrap values above 50% were shown. The tree was drawn using iTOL v4 (http:// itol. embl. de).
Figure 4. Comparative view of the gene clusters involved in the CM-CD pathway. Note the genetic organization of the CM-CD gene clusters from K. oxytoca (cym), Thermococcus sp. (cgt), B. subtilis (cyc), C. subterraneus ssp. (cld), Thermoanaerobacter spp. (thm), and Thermoanaerobacterium spp. (thb). Additionally, note the protein-encoding genes involved in the four steps of the CM-CD pathway. (i) Synthesis: CGTases (1, red). (ii) Translocation/Internalization: MdxE (2), MdxF (3), and MdxG (4) in blue. While the MdxX (5) and CDP (6) from G− K. oxytoca (cym) are also blue, the putative msmX-encoding gene is not included. (iii) Degradation: CDase (7), GA (8), and GP (9) in green. (iv) Metabolic assimilation: Pgi (10), PfkA (11), and PykF (12) in orange. AmyB (33) and the AmyEDC transporter system (34-36) from Thermoanaerobacterium spp. (thb), and the putative transcriptional regulator of the ABC transporter system from cym/cyc (37-38) are shown. Note the five groups of protein-encoding genes that are essential for several prokaryotic cell functions: (i) HPr (13), PolIIIα (25), and the CBS domain/Bateman module (24) for carbon catabolite regulation, bacterial genome replication, and sensing cellular energy status, metal ion concentration, and ionic strength. (ii) MurB (14), PHP (15), RapZ (16), RodZ (17), and WhiA (18) for cell wall biogenesis, sporulation, and cell division. (iii) feruloyl esterase (22), 2-phospho-l-lactate transferase (19), the enzyme system (R)-2-hydroxyglutaryl-CoA dehydratase (20, 21), and 4-hydroxy benzoyl-CoA thioesterase (23) for oxidative stress defense, degradation of aromatic compounds, and fatty acid metabolism. (iv) signal-transducing protein PII (26), methylenetetrahydrofolate reductase (29), methionine synthase (30), PepT (27) and the anaerobic transcriptional activator fnr (28) for amino acid metabolism. (v) tRNA(m 5 U 54 )methyltransferase (31) and MATE (32) for tRNA maturation and detoxification. Genes of unknown function are in gray. Abbreviations are listed in Table S4.
Figure 5. Proposed CM-CD pathway in G− bacteria (I), G+ bacteria (II), and archaea (III). Note the proteins involved in the four steps of the CM-CD pathway. (i) Synthesis: four-domain CGTases in G−, three-and conventional five-domain CGTases in G+ , and five-domain CGTases in archaea with either E CBM20 /E arch domains at the C-terminal region. (ii) Translocation/Internalization: MdxEFG-(X/MsmX) transporter system. The CDP in G− is also shown. Note that while the cyclo/maltodextrin-binding protein MdxE is an untethered component of the periplasmic space in G−, it is predicted to be anchored to the cytoplasmic membrane outer surface via a lipid moiety in G+ and archaea. Although the MdxX enzyme is a dedicated ATPase in G−, MsmX is a promiscuous ATPase in G+ and archaea. Cyclo/maltodextrin translocation into the cytoplasm by the two permease subunits MdxFG is triggered by the ATPase activity of MdxX/MsmX. (iii) Degradation: CDase, GA, and GP. Hexagons represent individual glucose molecules. (iv) Metabolic assimilation: Pgi, PfkA, and PykF. While Pgm and HK are not included in the CM-CD gene clusters of Fig. 4, the asterisks in HK*, Pgi*, and PykF* represent the modified EMP pathway in archaea. This figure was created with http:// BioRe nder. com.
Mining for novel cyclomaltodextrin glucanotransferases unravels the carbohydrate metabolism pathway via cyclodextrins in Thermoanaerobacterales

January 2022

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290 Reads

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12 Citations

Carbohydrate metabolism via cyclodextrins (CM-CD) is an uncommon starch-converting pathway that thoroughly depends on extracellular cyclomaltodextrin glucanotransferases (CGTases) to transform the surrounding starch substrate to α-(1,4)-linked oligosaccharides and cyclodextrins (CDs). The CM-CD pathway has emerged as a convenient microbial adaptation to thrive under extreme temperatures, as CDs are functional amphipathic toroids with higher heat-resistant values than linear dextrins. Nevertheless, although the CM-CD pathway has been described in a few mesophilic bacteria and archaea, it remains obscure in extremely thermophilic prokaryotes (T opt ≥ 70 °C). Here, a new monophyletic group of CGTases with an exceptional three-domain ABC architecture was detected by (meta)genome mining of extremely thermophilic Thermoanaerobacterales living in a wide variety of hot starch-poor environments on Earth. Functional studies of a representative member, CldA, showed a maximum activity in a thermoacidophilic range (pH 4.0 and 80 °C) with remarkable product diversification that yielded a mixture of α:β:γ-CDs (34:62:4) from soluble starch, as well as G3-G7 linear dextrins and fermentable sugars as the primary products. Together, comparative genomics and predictive functional analysis, combined with data of the functionally characterized key proteins of the gene clusters encoding CGTases, revealed the CM-CD pathway in Thermoanaerobacterales and showed that it is involved in the synthesis, transportation, degradation, and metabolic assimilation of CDs.


Fig. 2. Taurine induces muscle weakness in intact aged and castrated mice. A) Evolution of the body weight in 8-months-old mice in the castrated control condition (open circles), treated with taurine (filled circles) or alanine (grey circles). B) Evolution of the body weight in 8-months old mice in Sham control (open squares) and Sham treated with taurine (filled squares). C) Evolution of the grip strength force in 8-months old mice in the castrated control condition, treated with taurine or alanine. D) Evolution of the grip strength force in 8-months old mice in Sham control, or Sham treated with taurine, Inserts in B and D show the results of body weight and grip strength force in young mice control (open circles) or treated with taurine (filled circles).
Fig. 3. Food intake is reduced in castrated mice treated with taurine. Evaluation of water intake (A and C) and food intake (B and D) in castrated (A and B) and Sham (C and D) mice treated with taurine (white bar) or alanine (grey filled bars) vs control (black filled bars).
Fig. 4. Taurine treated mice showed no effect in mass and force production of isolated soleus and EDL muscles. Isolated soleus (A and C) and EDL (B and D) muscles from control (filled symbol), taurine (open symbol) or alanine (grey symbol) treated mice were stimulated with a 300 ms train of increasing frequencies. The raw force is expressed as grams-force (gf) obtained from soleus (A) and EDL (B) muscles. The normalized force is calculated correlating the raw force converted to newtons with the features of the muscle (length and weight) in soleus (C) and EDL (D). The inserts in C and D show the averaged weight obtained for soleus and EDL muscles and control, taurine or alanine treated mice.
Fig. 5. Soleus and EDL muscles isolated from castrated mice treated with taurine showed a significantly increased fatigue. Normalized amplitude of the force in Isolated soleus (A) or EDL (B) muscles obtained from control (filled symbol), taurine (open symbol) or alanine (grey symbol) treated mice. The insert of Fig. 5A is showing an expanded view of the normalized force obtained during the contractions #40e80. C) Averaged amplitudes of the normalized contraction (45, 60 and 75 th) of isolated soleus subjected to a fatiguing electrical stimulation (data extracted from plot 5A). D) Averaged amplitudes of the normalized contraction (20, 30 and 40th) of isolated EDL subjected to a fatiguing electrical stimulation (data extracted from plot 5B).
Fig. 6. Model of taurine effect in aged, castrated mice. The effect of taurine in aged mice is dependent of the dosage and persistence of administration. High levels of taurine produce a generalized effect averaged as positive. A low concentration of taurine administered persistently generates as a side effect the reduction in body weight and weakness.
A chronic low dosage of taurine induces muscle weakness in castrated-aged mice

November 2021

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130 Reads

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2 Citations

Translational Medicine of Aging

Taurine is an abundant metabolite associated with regulation of cell volume. Several signaling pathways are stimulated at a micromolar concentrations of taurine. However, most of the experimental studies employ this compound at a very high concentration (tens of millimolar). In this study, the role of a chronic treatment with a micromolar dosage of taurine in the physical performance of skeletal muscle of castrated-aged mice was characterized. Taurine was administered in drinking water (800 μM) to 9-months-old castrated (or sham) mice at approximately 20 mg/kg per day for 12 weeks. The weight of the mice, grip strength, food and water intake were monitored. Soleus or EDL muscles were dissected for determinations of force and fatigue. Castrated mice show a slow increase in body mass and a sustained reduction of grip strength. The taurine treatment delays the weigh recovery and generates a decrease in force of castrated and sham mice. No effect of taurine was observed in young mice. The food intake was significantly reduced in castrated mice treated with taurine (with no effect in water intake). The raw force generation or muscle mass in EDL and soleus muscle were similar in treated mice in comparison with control groups. Interestingly, the taurine treatment generated an increased fatigability in both EDL and soleus muscle. We suggest that a submillimolar concentration of taurine chronically administered during aging produce negative effect in physical performance. Caution should be taken when this compound is routinely consumed by old adults.


EN PRENSA Morphology and potential antibacterial capability of Actinoptychus octonarius Ehrenberg (Bacillariophyta) isolated from Manzanillo, Colima, in the Mexican Pacific coast. EN PRENSA

November 2020

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48 Reads

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1 Citation

Revista Bio Ciencias

Diatoms are ubiquitous in all aquatic areas. Recently, these marine microorganisms gained attention because of their health benefits, especially when addressing the problem of antibiotic resistance. In this study, Actinoptychus octonarius Ehrenberg was identified by its ultrastructural details by Scanning Electron Microscopy (SEM). Additionally, the antibacterial properties of A. octonarius Ehrenberg were evaluated employing the method of disk diffusion against Staphylococcus aureus and Vibrio vulnificus bacteria. Four A. octonarius Ehrenberg extracts were obtained by the sequential multi-solvent extraction process using hexane, dichloromethane, methanol, and water. The best antibacterial activity was observed for the methanol extract, which had a significant effect against S. aureus and V. vulnificus. Hexane extracts showed a limited antibacterial activity only against S. aureus and showing no significant effects against V. vulnificus. The area of inhibition of the extracts was higher to 1 cm2. The aqueous and dichloromethane extracts did not present antibacterial activity. In summary, this study revealed, for the first time, morphological characteristics of A.octonarius Ehrenberg diatom through a SEM methodology. Furthermore, it was observed that molecules present in the methanolic extracts of A. octonarius Ehrenberg have antibacterial action against Gram-positive S. aureus and Gram-negative V. vulnificus., while the hexane extract showed effect only against V. vulnificus.

Citations (3)


... The microbial count of the beef samples was counted by the pour plate technique on days 0, 3, 6, and 9. Plate Count Agar, Eosin-Methylene Blue agar, Mannitol Salt Agar, and Salmonella-Shigella Agar were used for counting total aerobic bacteria, E. coli, pathogenic staphylococci, and pathogenic enteric bacilli, respectively. The microbial count results were reported as log CFU/g for meat samples [25,26]. ...

Reference:

Fabrication and Characterization of Buforin I-Loaded Electrospun Chitosan/Polyethylene Oxide Nanofibrous Membranes with Antimicrobial Activity for Food Packing Applications
Antimicrobial Compounds from Skin Secretions of Species That Belong to the Bufonidae Family

... 73 Cyclomaltodextrin glucanotransferases (CGTases) from the GH13 family can catalyze the conversion of linear starch into cyclodextrins (CDs) through intramolecular transglycosylation. 74 The enzyme cuts a segment from the amylose and cyclizes to form CDs containing six, seven, or eight glucose units. The ability to engineer CGTases to produce specific ...

Mining for novel cyclomaltodextrin glucanotransferases unravels the carbohydrate metabolism pathway via cyclodextrins in Thermoanaerobacterales

... Taurine supplementation has been described to effectively reduce pathological features in mdx mice, however, some studies have reported adverse effects on body weight and growth development [16,17,29,30]. The aim of this study was to investigate whether ectoine could represent an alternative for taurine by preclinical investigations in the mdx mouse model. ...

A chronic low dosage of taurine induces muscle weakness in castrated-aged mice

Translational Medicine of Aging