Richard C. Shiery’s research while affiliated with Pacific Northwest National Laboratory and other places

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Publications (13)


Graphene Oxide Sheet Size Influences the Ion Adsorption and Permeation Behavior of Laminate Membranes
  • Article

April 2025

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3 Reads

Carbon

Shuai Tan

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Samantha Reid

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Manh Thuong Nguyen

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Representative ESI-MS mass spectra collected in the negative ion mode of [EMIM][Br]⁻ anions over the m/z range (a) 250–2000 and (b) 1250–3000 and [EMIM][I]⁻ over the m/z range (c) 250–2000 and (d) 1000–4000. The blue and red numbers designate singly and doubly charged anionic clusters with the stoichiometries [EMIM]x[Br/I]x+1⁻ (blue) and [EMIM]y[Br/I]y+2²⁻ (red), respectively. The y axes are normalized to the most abundant species in each spectrum.
Fragmentation yield curves for representative mass-selected [EMIM]5[X]6⁻ anionic clusters showing depletion of the precursor anion and formation of product anions with increasing collision energy for X = (a) Cl, (b) Br, (c) I, and (d) BF4. The values on the x axis are reported in the center-of-mass energy frame. Metastable precursor anions exhibiting less than 100% abundance at the lowest energy values exhibit fragmentation during the mass selection process.
Survival curves for mass-selected [EMIM]x[Y]x+1⁻ (x = 1–8) precursor anions for (a) Y = Br and (b) Y = I. The values on the x axis are reported in the center-of-mass energy frame (Ecm) and normalized to the number of vibrational degrees of freedom (nVDOF) of each cluster. (c) Plot of the energy required to induce depletion of 50% of the precursor ion abundance (E50) of mass-selected [EMIM]x[Cl/Br/I/BF4]x+1⁻ (x = 1–7) clusters as a function of size.
T = 10 K NIPE spectra of (a) [EMIM]x[Br]x+1⁻ and (b) [EMIM]x[I]x+1⁻ clusters with x = 1–7 obtained at a photodetachment wavelength of 157 nm. The dashed lines serve as guides for the ADE trend. The lower EBE bands labeled * and # are due to detachment from doubly charged [EMIM]y[Br/I]y+2²⁻ (y = 8, 10, 12, 14) and triply charged [EMIM]z[Br/I]z+3³⁻ (z = 18 or 21) clusters, respectively, with m/z values that are degenerate with those of the corresponding singly charged species. The energy resolution (∆E/E) is 2% (i.e., ∼20 meV for 1 eV electrons).
T = 10 K NIPE spectra of (a) [EMIM][Br] and (b) [EMIM][I] clusters obtained at a photodetachment wavelength of 157 nm. The EBE bands appearing in red, blue, and green are due to detachment from singly charged [EMIM]x[Br/I]x+1⁻ (x = 4–7), doubly charged [EMIM]y[Br/I]y+2²⁻ (y = 8–14), and triply charged [EMIM]z[Br/I]z+3³⁻ (z = 18, 21) clusters, respectively, with m/z values that are degenerate. The energy resolution (∆E/E) is 2% (i.e., ∼20 meV for 1 eV electrons).

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Influence of counterion substitution on the properties of imidazolium-based ionic liquid clusters
  • Article
  • Full-text available

February 2025

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36 Reads

Due to their unique physiochemical properties that may be tailored for specific purposes, ionic liquids (ILs) have been investigated for various applications, including chemical separations, catalysis, energy storage, and space propulsion. The different cations and anions comprising ILs may be selected to optimize a range of desired properties, such as thermal stability, ionic conductivity, and volatility, leading to the designation of certain ILs as designer “green” solvents. The effect of counterions on the properties of ILs is of both fundamental scientific interest and technological importance. Herein, we report a systematic experimental and theoretical investigation of the size, charge, stability toward dissociation, and geometric/electronic structure of 1-ethyl-3-methyl imidazolium (EMIM)-based IL clusters containing two different atomic counterions (i.e., bromide [Br⁻] and iodide [I⁻]). This work extends our studies of EMIM⁺ cations with atomic chloride (Cl⁻) and molecular tetrafluoroborate (BF4⁻) anions reported previously by Baxter et al. [Chem. Mater. 34, 2612 (2022)] and Zhang et al. [J. Phys. Chem. Lett. 11, 6844 (2020)], respectively. Distributions of anionic IL clusters were generated in the gas phase using electrospray ionization and characterized by high mass resolution mass spectrometry, energy-resolved collision-induced dissociation, and negative ion photoelectron spectroscopy experiments. The experimental results reveal anion-dependent trends in the size distribution, relative abundance, ionic charge state, stability toward dissociation, and electron binding energies of the IL clusters. Complementary global optimization theory provides molecular-level insights into the bonding and electronic structure of a selected subset of clusters, including their low energy structures and electrostatic potential maps, and how these fundamental characteristics are influenced by anion substitution. Collectively, our findings demonstrate how the fundamental properties of ILs, which determine their suitability for many applications, may be tuned by substituting counterions. These observations are critical in the sub-nanometer cluster size regime where phenomena do not scale predictably to the bulk phase, and each atom counts toward determining behavior.

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Analysis of the First Ion Coordination Sphere: A Toolkit to Analyze the Coordination Sphere of Ions

April 2023

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57 Reads

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6 Citations

Journal of Chemical Information and Modeling

Rapid and accurate approaches to characterizing the coordination structure of an ion are important for designing ligands and quantifying structure-property trends. Here, we introduce AFICS (Analysis of the First Ion Coordination Sphere), a tool written in Python 3 for analyzing the structural and geometric features of the first coordination sphere of an ion over the course of molecular dynamics simulations. The principal feature of AFICS is its ability to quantify the distortion a coordination geometry undergoes compared to uniform polyhedra. This work applies the toolkit to analyze molecular dynamics simulations of the well-defined coordination structure of aqueous Cr3+ along with the more ambiguous structure of aqueous Eu3+ chelated to ethylenediaminetetraacetic acid. The tool is targeted for analyzing ions with fluxional or irregular coordination structures (e.g., solution structures of f-block elements) but is generalized such that it may be applied to other systems.



Water Defect Stabilizes the Bi 3+ Lone-Pair Electronic State Leading to an Unusual Aqueous Hydration Structure

September 2022

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38 Reads

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7 Citations

Inorganic Chemistry

The aqueous hydration structure of the Bi3+ ion is probed using a combination of extended X-ray absorption fine structure (EXAFS) spectroscopy and density functional theory (DFT) simulations of ion-water clusters and condensed-phase solutions. Anomalous features in the EXAFS spectra are found to be associated with a highly asymmetric first-solvent water shell. The aqueous chemistry and structure of the Bi3+ ion are dramatically controlled by the water stabilization of a lone-pair electronic state involving the mixed 6s and 6p orbitals. This leads to a distinct multimodal distribution of water molecules in the first shell that are separated by about 0.2 Å. The lone-pair structure is stabilized by a collective response of multiple waters that are localized near the lone-pair anti-bonding site. The findings indicate that the lone-pair stereochemistry of aqueous Bi3+ ions plays a major role in the binding of water and ligands in aqueous solutions.


Ionic Contraction across the Lanthanide Series Decreases the Temperature-Induced Disorder of the Water Coordination Sphere

December 2021

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47 Reads

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15 Citations

Inorganic Chemistry

In liquid, temperature affects the structures of lanthanide complexes in multiple ways that depend upon complex interactions between ligands, anions, and solvent molecules. The relative simplicity of lanthanide aqua ions (Ln3+) make them well suited to determine how temperature induces structural changes in lanthanide complexes. We performed a combination of ab initio molecular dynamics (AIMD) simulations and extended X-ray absorption fine structure (EXAFS) measurements, both at 25 and 90 °C, to determine how temperature affects the first- and second-coordination spheres of three Ln3+ (Ce3+, Sm3+, and Lu3+) aqua ions. AIMD simulations show first lanthanide coordination spheres that are similar at 25 and 90 °C, more so for the Lu3+ ion that remains as eight-coordinate than for the Ce3+ and Sm3+ ions that change their preferred coordination number from nine (at 25 °C) to eight (at 90 °C). The measured EXAFS spectra are very similar at 25 and 90 °C, for the Ce3+, Sm3+, and Lu3+ ions, suggesting that the dynamical disorder of the Ln3+ ions in liquid water is sufficient such that temperature-induced changes do not clearly manifest changes in the structure of the three ions. Both AIMD simulations and EXAFS measurements show very similar structures of the first coordination sphere of the Lu3+ ion at 25 and 90 °C.


Citations (7)


... This is due to the pneumatic pressure applied from above to the porous substrate, which compacts the GO composite layers during the fabrication process [50,51]. Additional treatment of the GO/n-MIL #3 by immersion in AgNO 3 solution with UV irradiation slightly reduced the thickness of the membranes, likely due to the removal of oxygen functional groups in the GO laminates, and the realignment of the GO laminates through the reduction of GO laminates by UV irradiation [52,53]. ...

Reference:

Silver nanoparticle-decorated reduced graphene oxide/ nanocrystalline titanium metal-organic frameworks composite membranes with enhanced nanofiltration performance and photocatalytic ability
Distinct ion transport behavior between graphene oxide and UV-irradiated reduced graphene oxide membranes
  • Citing Article
  • August 2024

Chemical Engineering Journal

... The only XANES theoretical work dealing with Th(IV) hydration is that of Chaboy and Díaz-Moreno [66] in which authors conclude, taking into account the sensitivity of the XANES technique to the bonding geometry (coordination polyhedron), that the hydration sphere of Th(IV) is best modelled by 9 water molecules forming a tricapped trigonal prism. With the aim of determining the most representative Th(IV) coordination geometry happening during our simulation, we have used the AFICS (Analysis of the First Ion Coordination Sphere) method proposed by McElhany et al. [67]. The analysis allows us to quantify the distortion a coordination geometry undergoes when compared with an ideal reference polyhedron. ...

Analysis of the First Ion Coordination Sphere: A Toolkit to Analyze the Coordination Sphere of Ions
  • Citing Article
  • April 2023

Journal of Chemical Information and Modeling

... More detailed discussion is given in Escobedo et al. (in prep.). 10 The layered crystalline structures of these Bi minerals exhibit electronic and spatial flexibility, due to the lone-pair electronic effect. 24 ...

Water Defect Stabilizes the Bi 3+ Lone-Pair Electronic State Leading to an Unusual Aqueous Hydration Structure
  • Citing Article
  • September 2022

Inorganic Chemistry

... The χ(k) spectrum was computed for each frame using FEFF8.5 software, [52][53][54] following previously reported procedures. [29,41,55,56] FEFF was used with the default Hedin-Lundqvist exchange correlation potential and a 6.0 Å cutoff for the selfconsistent field calculation. The program was adjusted to include up to 15,000 single and multiple-scattering paths (increased from the 1,200 default), and multiple scattering paths with up to 8 legs were included. ...

Ionic Contraction across the Lanthanide Series Decreases the Temperature-Induced Disorder of the Water Coordination Sphere
  • Citing Article
  • December 2021

Inorganic Chemistry

... 1), is the main influence on nanopore surface complexation . Electrostatic effects can become important for lanthanides at pH >7, because Ln 3+ cations are Brønsted acids capable of hydrolyzing water; however, pK a values for the first hydrolysis product for Ln 3+ cations in this study are >7 (Shiery et al. 2021). Therefore, in the adsorption experiments on SiO 2 surfaces, Ln 3+ cations are in the aqua-ion form [Ln·(H 2 O) 8 ] 3+ while SiO 2 surfaces are negatively charged at the pH 6 used in these experiments. ...

Computational Prediction of All Lanthanide Aqua Ion Acidity Constants
  • Citing Article
  • July 2021

Inorganic Chemistry

... In addition, the peaks assigned to the reduction of [ZCu 2+ (OH)] + and Z 2 Cu 2+ to Cu + in Cu 1 -La-SSZ-13 slightly move to lower temperatures compared to those in Cu 1 -SSZ-13, which implies that the redox abilities of Cu sites are enhanced after La ions loading. This is might because that the introduction of secondary cation ions can weaken the interaction between the framework and Cu ions as the sample with low Cu content, which allows Cu ions to be positioned deeper in the CHA cages and become more readily reducible [45]. After hydrothermal ageing, more Z 2 Cu 2+ and less CuO x exist in Cu 1 -La-SSZ-13-HTA than those in Cu 1 -SSZ-13-HTA. ...

Effect of Lanthanum Ions on the Brønsted Acidity of Faujasite and Implications for Hydrothermal Stability
  • Citing Article
  • June 2021

The Journal of Physical Chemistry C

... Nikolas et al. [101] used the DFT+U method to perform theoretical calculations of XANES spectra for actinide oxides. Additionally, Cantu et al. [102] employed their self-developed GTH pseudopotential for 4f-invalence lanthanides to simulate the dynamic structure of trivalent lanthanide hydrates. They combined the FEFF8.5 with AIMD trajectory-generated EXAFS theoretical spectra to compare with experimentally produced EXAFS spectra, analyzing the coordination structures of Ln 3+ ion hydrates. ...

Coordination Sphere of Lanthanide Aqua Ions Resolved with Ab Initio Molecular Dynamics and X-ray Absorption Spectroscopy

Inorganic Chemistry