Renan C. Moioli’s research while affiliated with Heriot-Watt University and other places

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Publications (35)


Timeline of agent’s health state progression through a SARS-CoV-2 infection
(A) Possible daily transitions of one agent starting from Susceptible up to Dead or Immune. Sequences of the same state represent average time without change. (B) The evolution of the state of 10,000 agents, with age and sex distribution suited to the City of Natal, turned into Incubated at day zero. The simulation assumes illimited ICU bed availability.
High diversity of contact networks
Layers and sub-layers are complex networks composed of agents (blue dots) and social interactions (lines). Representative layers (Home and Transportation) and sub-layers (Catholic churches, Public Elementary Schools and Services) display different characteristics as high connectivity, coverage and a small world topology. All the information about connections is available in Table 3.
Epidemiological data on the first wave of the Covid-19 pandemic in the City of Natal, Brazil
(A) The daily number of confirmed cases with a total of 26,371 cases and a peak of 552 new cases in one day (red line), and the estimated daily number of external cases with a total of 3,957 cases with a peak of 76 new cases (blue line and area). (B) Estimated ICU beds available (silver dashed line) and utilized (black dashed line) during the first wave. Numbers for Natal are estimated as 46.68% of the metropolitan region data.
Sensitivity analysis indicates an inhomogeneous impact of different transmission networks in the outbreak progression
The difference in the total number of deaths with a reduction of Pcontamination from 1.7 to 1.5 in all layers, in each layer or sub-layer. Graphics represent median (bar), quartiles (line), absolute median difference to high-value simulation and relative difference to a reduction of Pcontamination value in all layers.
Baseline simulation from the agent model provides a good fit for epidemiological data on the first wave of the SARS-CoV-2 epidemic in the City of Natal, Brazil
(A) Daily and (B) accumulated deaths during the first wave of the SARS-CoV-2 outbreak in the City of Natal (from the end of February to the beginning of October) from simulation (blue) and actual reports (black). Vertical lines indicate the dates of publication of governmental decrees. (C and D) The accumulated number of infections originated in each layer or sub-layer. Simulation data from (A to D) were reported as median and quartiles (5%, 25%, 75%, 95%) from 500 runs. (E) Model-predicted ICU requirement (solid purple line, median) and excess (purple area) from estimated daily availability (silver dashed line) and the actual estimated occupation (black line) of ICU beds for the City of Natal.

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Measuring the impact of nonpharmaceutical interventions on the SARS-CoV-2 pandemic at a city level: An agent-based computational modelling study of the City of Natal
  • Article
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October 2022

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46 Reads

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3 Citations

Paulo Henrique Lopes

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Liam Wellacott

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The severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) pandemic hit almost all cities in Brazil in early 2020 and lasted for several months. Despite the effort of local state and municipal governments, an inhomogeneous nationwide response resulted in a death toll amongst the highest recorded globally. To evaluate the impact of the nonpharmaceutical governmental interventions applied by different cities—such as the closure of schools and businesses in general—in the evolution and epidemic spread of SARS-CoV-2, we constructed a full-sized agent-based epidemiological model adjusted to the singularities of particular cities. The model incorporates detailed demographic information, mobility networks segregated by economic segments, and restricting bills enacted during the pandemic period. As a case study, we analyzed the early response of the City of Natal—a midsized state capital—to the pandemic. Although our results indicate that the government response could be improved, the restrictive mobility acts saved many lives. The simulations show that a detailed analysis of alternative scenarios can inform policymakers about the most relevant measures for similar pandemic surges and help develop future response protocols.

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Measuring the impact of nonpharmaceutical interventions on the SARS-CoV-2 pandemic at a city level: An agent-based computational modeling study of the City of Natal

May 2022

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34 Reads

The severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) pandemic hit almost all cities in Brazil in early 2020 and lasted for several months. Despite the effort of local state and municipal governments, an inhomogeneous nationwide response resulted in a death toll amongst the highest recorded globally. To evaluate the impact of the nonpharmaceutical governmental interventions applied by different cities – such as the closure of schools and business in general – in the evolution and epidemic spread of SARS-CoV-2, we constructed a full-sized agent-based epidemiological model adjusted to the singularities of particular cities. The model incorporates detailed demographic information, mobility networks segregated by economic segments, and restricting bills enacted during the pandemic period. As a case study, we analyzed the early response of the City of Natal – a midsized state capital – to the pandemic. Although our results indicate that the governmental response could be improved, the restrictive mobility acts saved many lives. The simulations show that a detailed analysis of alternative scenarios can inform policymakers about the most relevant measures for similar pandemic surges and help developing future response protocols.


FIGURE 1. Connected Papers graph for A. Dodd, The Trouble with Insect Cyborgs [4]. Each node is an academic paper related to the origin paper, papers are arranged according to their similarity, node size and colour correspond to the number of citations and the publishing year, respectively.
FIGURE 2. Sensing and actuation principles.
FIGURE 3. Example of the feedback control loop used in cyborg insects. Adapted from [31].
FIGURE 4. Use cases of cyborg insects: (a) military applications, (b) agricultural applications, (c) search and rescue. Benefiting from and contributing to these practical use cases, cyborg insects are also a relevant platform for testing biological hypotheses.
FIGURE 6. Genomic sequencing in cyborg insects as a tool for amplifying the alarm raised by these ''canaries in coal mine'' as the deterioration of living conditions in eco-systems affects their genome and well-being. It would serve as a component of the natural-social hybrid entity in decision-making.
Cyborg Insects: Bug or a Feature?

January 2022

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629 Reads

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13 Citations

IEEE Access

Cyborg insects are a major part of the vision of future interactions of the living world and technology, including but not limited to the Internet of Living Things (IoLT). They are crawling or flying insects with additional electronic circuitry allowing remote control of their movement and collection of sensory data. In this critical review, we survey the historical development of cyborg insects engineering, from the first backpacks on insects used for communication and sensing, to different methods of control and actuation of insects’ locomotion. We review the suggested applications of cyborg insects ranging from military use to agriculture, pointing out the problematic connotations of swarms and cyborgs in these contexts. We address the applications and the narratives around engineered insects from the perspective of philosophy, economy, law, and politics. We add perspectives on emancipatory potential of cyborg technology and where the future of it could lie.


Noninvasive Detection of Appliance Utilization Patterns in Residential Electricity Demand

March 2021

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101 Reads

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4 Citations

Energies

Smart meters with automatic meter reading functionalities are becoming popular across the world. As a result, load measurements at various sampling frequencies are now available. Several methods have been proposed to infer device usage characteristics from household load measurements. However, many techniques are based on highly intensive computations that incur heavy computational costs; moreover, they often rely on private household information. In this paper, we propose a technique for the detection of appliance utilization patterns using low-computational-cost algorithms that do not require any information about households. Appliance utilization patterns are identified only from the system status behavior, represented by large system status datasets, by using dimensionality reduction and clustering algorithms. Principal component analysis, k-means, and the elbow method are used to define the clusters, and the minimum spanning tree is used to visualize the results that show the appearance of utilization patterns. Self organizing maps are used to create a system status classifier. We applied our techniques to two public datasets from two different countries, the United Kingdom (UK-DALE) and the US (REDD), with different usage patterns. The proposed clustering techniques enable effective demand-side management, while the system status classifier can detect appliance malfunctions only through system status analyses.


Neurorobotic Models of Neurological Disorders: A Mini Review

March 2021

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147 Reads

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12 Citations

Frontiers in Neurorobotics

Modeling is widely used in biomedical research to gain insights into pathophysiology and treatment of neurological disorders but existing models, such as animal models and computational models, are limited in generalizability to humans and are restricted in the scope of possible experiments. Robotics offers a potential complementary modeling platform, with advantages such as embodiment and physical environmental interaction yet with easily monitored and adjustable parameters. In this review, we discuss the different types of models used in biomedical research and summarize the existing neurorobotics models of neurological disorders. We detail the pertinent findings of these robot models which would not have been possible through other modeling platforms. We also highlight the existing limitations in a wider uptake of robot models for neurological disorders and suggest future directions for the field.


Schematic view of the simulation framework and respective pseudocode. (A) All steps (1–8) of a cycle of the framework are depicted. After the initial setup of the network (1), random individuals are selected to die (like the gray node in 2). Its associated extended phenotype becomes available (3) and one of the neighbors of the same type (in this case, type A) and without an associated extended phenotype is selected to gain the available extended phenotype (4). Selection of a node to duplicate and occupy the position of the dead node is based on a weight matrix (5, 6), as described in the text. A new node has a chance to generate an extended phenotype attached to itself (7). Each extended phenotype has an expiration time (t) represented by the number in the respective squares (7, 8). Step 8 represents the step 1 of the new cycle. For clarity, only the central node is represented with all its connections. (B) Pseudocode for the simulation framework described above (A).
Dynamics of populations A and B according to 5 million simulations for different values of α. The blue and orange lines in (A,B) show how many simulations ended with the fixation of types A and B, respectively. The green line in (A,B) shows how many simulations ended without the fixation of either type, that is, undefined simulations. Proportions of type A and B individuals in the undefined simulations are shown in (C,D). (A) Only population A is able to produce and share extended phenotypes. (B) Both populations can produce extended phenotypes but only population A is able to share extended phenotypes. (C) Proportions of type A and B individuals for the simulations represented by the green curve shown in (A). (D) Proportion of type A and B individuals for the simulations represented by the green curve shown in (B).
Schematic view of the modified simulation framework and respective pseudocode. (A) Nodes of types A and B can search, produce, and use its own or use other extended phenotypes. After the initial setup of the network (1), random individuals are selected to die (2). The associated extended phenotype becomes available, and one of the neighboring nodes in the Searching state is selected to gain the available extended phenotype (3, 4). Selection of a node to duplicate and occupy the position of the dead node is based on a weight matrix (5, 6), according to the state of each node. Node state transition and expiration time counters (t) are updated, and states and extended phenotypes are adjusted accordingly (7, 8). Step 8 represents step 1 of the new cycle. (B) Pseudocode for the simulation framework described above (A).
Association between ω and winning populations. Y axis in both graphs represents the average fixation % in the corresponding simulations. (A) Association between ω and winning populations (those with higher fixation rate). For this simulation, β=0.03 and γ=0.02 for both populations. (B) In this simulation, both α and γ are changed under the restriction that ωA=ωB Populations with γ>α are winners in situations where ωA=ωB. Values in the first line in the X axis correspond to αA and γB. Values in the second line of the X axis correspond to αB and γA.
The Shared Use of Extended Phenotypes Increases the Fitness of Simulated Populations

February 2021

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33 Reads

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1 Citation

Extended phenotypes are manifestations of genes that occur outside of the organism that possess those genes. In spite of their widespread occurrence, the role of extended phenotypes in evolutionary biology is still a matter of debate. Here, we explore the indirect effects of extended phenotypes, especially their shared use, in the fitness of simulated individuals and populations. A computer simulation platform was developed in which different populations were compared regarding their ability to produce, use, and share extended phenotypes. Our results show that populations that produce and share extended phenotypes outrun populations that only produce them. A specific parameter in the simulations, a bonus for sharing extended phenotypes among conspecifics, has a more significant impact in defining which population will prevail. All these findings strongly support the view, postulated by the extended fitness hypothesis (EFH) that extended phenotypes play a significant role at the population level and their shared use increases population fitness. Our simulation platform is available at https://github.com/guilherme-araujo/gsop-dist.


Evaluation of Frequency-Dependent Effects of Deep Brain Stimulation in a Cortex-Basal Ganglia-Thalamus Network Model of Parkinson’s Disease *

July 2020

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28 Reads

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6 Citations

Parkinson's disease (PD) is a chronic neurodegenerative disease whose motor symptoms are accompanied by an exaggerated power in the alpha-beta (7-35Hz) band and an increased synchronization of neurons encompassing the cortex-basal ganglia-thalamus network. Currently, deep brain stimulation (DBS) is used as an effective therapy for reducing the excessive power and synchrony observed in brain circuits, thereby ameliorating the PD symptoms. In the present study, we used a biologically plausible computational model of cortex-basal ganglia-thalamus network, which represents both healthy and PD conditions, to systematically investigate the effects of DBS frequency on the model outputs. DBS was applied to the subthalamic nucleus (STN) at different stimulation frequencies (40Hz to 300Hz). Spike train variability and spectral power in the 7-35Hz band were measured from the several nuclei represented in the model. In addition, the magnitude squared coherence between the nuclei was assessed. An increased DBS frequency tended to produce interspike intervals (ISIs) with higher variability as compared to PD condition. Also, DBS significantly reduced the alpha-beta power for almost all brain nuclei. The median of the magnitude-squared coherence matrix (which is a metric of global network synchronization) decreased significantly with the increase of DBS frequency.



Method for positioning and rehabilitation training with the ExoAtlet ® powered exoskeleton

March 2020

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571 Reads

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26 Citations

MethodsX

Exoskeletons for locomotion, support, or other uses are becoming more common. An increasing number of studies are demonstrating relevant results in rehabilitation. Here we describe the steps required to properly place and train patients in ExoAtlet ® powered exoskeletons (Moscow, Russia), for which there is currently limited information available. These steps combine actions related to the hardware, software, as well as safety, rehabilitation, and psycho-emotional state of the subject. Training starts with a general preparation of the environment, the equipment, and the patient. When the actual training program begins, the patient needs to gradually learn to perform the different actions that will be required to control the exoskeleton. Initially, training requires transferring weight between legs to guarantee adequate equilibrium control. Then, actions assisted by computer-controlled motors begin, namely: standing up, walking in place, moving small distances and sitting down. As the patient becomes comfortable with the exoskeleton and the cardiovascular system becomes adjusted to the upright position, training can then include walking over longer distances, inclined planes, opening doors, and climbing stairs. • Powered exoskeletons are becoming a common method in rehabilitation. • The use of ExoAtlet ® powered exoskeletons in clinical research requires manipulation of variables thought to promote rehabilitation, without compromising safety standards. • The phases of training are: transferring weight between legs, walk in place, and walk over longer distances.


Influence of Judo Experience on Neuroelectric Activity During a Selective Attention Task

January 2020

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1,191 Reads

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13 Citations

Objective We compared the cognitive performance and neuroelectric responses during a selective attentional task in judo athletes with different levels of expertise. Methods Judo black and white belt athletes performed both general and specific fitness tests while simultaneously completing a Stroop color-word test recorded by 64 electroencephalogram channels. Results Cognitive behavioral performance and event-related spectral perturbation (ERSP) present no differences between groups. However, the topographic analysis found different neural source patterns in each group. Judo black belts compared to judo white belts presented a greater peak amplitude of P300 in the middle frontal gyrus and of N200 in the cuneus, but slower latency of P300 in the precuneus. Conclusion Despite no difference in cognitive behavioral performance, judo expertise causes a difference in the allocation of attentional and conflict detection neural resources.


Citations (20)


... Several studies [4][5][6][7] have shown that pharmaceutical interventions (PIs) and nonpharmaceutical interventions (NPIs), such as vaccination, mask-wearing and mandatory isolation, play a significant role in controlling the spread of infectious diseases. They can achieve several objectives, including reducing the number of infections and shortening the duration of the epidemic. ...

Reference:

Response Strategies for Emerging Infectious Diseases: More Efforts Are Needed
Measuring the impact of nonpharmaceutical interventions on the SARS-CoV-2 pandemic at a city level: An agent-based computational modelling study of the City of Natal

... Alternating positive and negative pulses maintain input charge balance in the brain and possess the capability to induce profound neural excitation, becoming a widespread application in the field of bioelectrical stimulation [28]. For instance, robotic insects achieve precise control over movement, turning, and flight through electrical stimulation of muscle groups and sensory systems within the brain or thoracic ganglia [29,30]. Similarly, electrical stimulation of specific brain regions in rats, such as the medial forebrain bundle (MFB), primary somatosensory cortex barrel field (S1BF), and superior colliculus (SC), effectively induces corresponding behaviors, enabling controlled forward movement and directional turns in robotic rats [31,32]. ...

Cyborg Insects: Bug or a Feature?

IEEE Access

... And, this is the characteristic of autistic behavior [25]. The study using neuroroboytic simulation of neurobiology provided system-level explanation of the mechanisms associated with various types of behavioral rigidity found in ASD and other types of psychiatric disorders [18,25].Further, neurorobotics and cognitive robotics study supports the hypothesis that the underlying mechanism excitation or inhibitoion imbalance in ASD is a local processing bias in ASD[26]. ...

Neurorobotic Models of Neurological Disorders: A Mini Review

Frontiers in Neurorobotics

... In [15], PCA dimensionality reduction was applied as an unsupervised NILM approach to identify power consumption patterns of home electrical appliances. In [16], PCA and k-means were used to detect the presence of appliance clusters, alongside a method to identify the appliances withing each cluster, followed by a minimum spanning tree as a dimension reduction for easier interpretation of the identified clusters. In [17], several pattern recognition algorithms for residential energy disaggregation were evaluated, including decision trees, support vector machine, optimum-path forest, multilayer perceptron, and k-nearest neighbors. ...

Noninvasive Detection of Appliance Utilization Patterns in Residential Electricity Demand

Energies

... The field is characterized by increasing complexity of topics addressing general adaptational and evolutionary questions, as was already demonstrated in overviews of Odling-Smee et al. (2013 , Table 1) or Laland et al. (2016) and more recently by Trappes et al. (2022). The structural richness of the associated modeling efforts is therefore not unexpected (for a few examples, see Laland et al. 2001, Rendell et al. 2011, Bailey 2012, and more recently de Araújo et al. 2021, Scheiner et al. 2022, Dong 2022 or Longcamp and Draghi 2023 as well as the numerous references given therein). ...

The Shared Use of Extended Phenotypes Increases the Fitness of Simulated Populations

... However, these unsupervised feature learning techniques are predominantly employed in the field of image analysis. In the study, 29 deep neural networks, specifically CNN and convolutional long short-term memory (ConvLSTM) classifiers, were employed to analyze EEG representations in a marmoset monkey model of PD. The neural networks were trained and evaluated using local field potential measurements obtained from both healthy and Parkinsonian subjects. ...

Unveiling Parkinson’s Disease Features from a Primate Model with Deep Neural Networks

... In the current paradigm, computational modelling is already accepted as a viable method to answer open questions regarding neurodegenerative diseases [32]. There have been advances in understanding the effects of disease characteristics on brain functionality [33,34,35,36,37,38,39], modelling disease progression [40,41], and testing relevant therapies or treatments [42,43,44,45,46] using computational modelling techniques. ...

Evaluation of Frequency-Dependent Effects of Deep Brain Stimulation in a Cortex-Basal Ganglia-Thalamus Network Model of Parkinson’s Disease *
  • Citing Conference Paper
  • July 2020

... Crutches were given to the subjects for additional safety. The familiarization session allowed the participants to get used to the sensations of limited motion induced by the exoskeleton, learn how to shift their body weight from one foot to another, and follow the exoskeleton movements without resisting them [57]. ...

Method for positioning and rehabilitation training with the ExoAtlet ® powered exoskeleton

MethodsX

... In fact, stringent evidence was demonstrated among adolescent and young judo players on the several neurophysiological and neuroimaging alterations in brain structure and function by practicing judo [54][55][56]. In a study using event-related potentials and a selective attention task [54], it was found that judo players with black belts (experts) exhibited a higher peak amplitude of P300 in the middle frontal gyrus and N200 in the cuneus. ...

Influence of Judo Experience on Neuroelectric Activity During a Selective Attention Task

... The NES s was preprocessed using a 5th-order bandpass digital Butterworth filter (8)(9)(10)(11)(12)(13)(14)(15)(16)(17)(18)(19)(20)(21)(22)(23)(24)(25) with an analysis window duration of 500 ms and a passband ripple equal to 1 dB. These settings were necessary to ensure the integrity of events related to desynchronization and synchronization (ERD/ERS) during MI related to the lower limbs [12]. ...

Interfacing Brains to Robotic Devices—A VRPN Communication Application
  • Citing Chapter
  • January 2019

IFMBE proceedings