Prakash Masurekar's research while affiliated with Rutgers, The State University of New Jersey and other places
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Publications (35)
The Candida albicans fitness test is a whole cell screening platform that utilizes a mixed-pool of C. albicans mutants, each of which carries a heterozygous deletion of a particular gene. In the presence of an antifungal inhibitor, a subset of these mutants exhibits a growth phenotype of hypersensitivity or hyposensitivity. Collectively these mutan...
This part introduction presents an overview of the key concepts discussed in the subsequent chapters of this book. It describes the initial stages of establishing an industrial microbiological process: culture isolation and preservation, screening, small‐scale fermentation, and process optimization. The part focuses broadly on two themes, namely, s...
This part introduction presents an overview of the key concepts discussed in the subsequent chapters of this book. It describes a number of molecular tools for enzyme discovery. The part provides insightful discussions on various directed evolution methods used in enzyme engineering. It discusses enzyme promiscuity and its role in creation of new p...
This part introduction presents an overview of the key concepts discussed in the subsequent chapters of this book. It covers advances in cultivating microbial, plant, mammalian, and insect cells and their use for production of therapeutic compounds. The part includes miniaturization of methods used to grow microorganisms, technologies used for cult...
One of the most significant recent developments affecting industrial microbiology has been the marked increase in activity and anticipation related to microbially produced chemicals and, especially, fuels. This introduction presents an overview of the key concepts discussed in the subsequent chapters of this book. The part addresses physiological a...
This part introduction presents an overview of the key concepts discussed in the subsequent chapters of this book. It describes contemporary methods and strategies for engineering and improving some of the most widely used industrial microorganisms. Each is focused on a particular taxonomic grouping that shares similar methods of genetic manipulati...
This part introduction presents an overview of the key concepts discussed in the subsequent chapters of this book. It describes the biosynthesis of various glycosides of aromatic polyketides in various Streptomyces hosts, and how the understanding of the genetic bases of biosynthesis has enabled the production of novel, hybrid molecules. The import...
This part introduction presents an overview of the key concepts discussed in the subsequent chapters of this book. It focuses on the major elements of biological engineering and scale‐up that are considered key for industrial process success. The part begins where most bioprocess development efforts start. The selection of raw materials and subsequ...
This chapter describes the 15-year journey of discovery and development of caspofungin acetate (CANCIDAS) a parenteral antifungal agent. The precursor of caspofungin is a natural product lipophilic cyclic peptide, pneumocandin B0. The chapter is divided into five sections describing in chronological order: (i) discovery of the natural product pneum...
Covering: 1985 to 2001.This paper describes a fifteen year journey from concept to clinical discovery and development of the first in class caspofungin acetate (CANCIDAS®) a parenteral antifungal agent. Caspofungin is a semisynthetic derivative of pneumocandin B0, a naturally occurring, lipophilic cyclic peptide isolated from the fungus, Glarea loz...
Previously, we have pioneered Drosophila melanogaster as a reductionist model to show that 1-octen-3-ol, a musty-smelling volatile compound emitted by fungi and other organisms, causes loss of dopaminergic neurons and Parkinson's disease-like symptoms in flies. Using our in vivo Drosophila system, the modulatory roles of important signaling pathway...
Natural products have been major sources of antibacterial agents and remain very promising. Frequent rediscoveries of known compounds hampers progress of new discoveries and demands development and utilization of new methods for rapid biological and chemical dereplication. This paper describes an efficient approach for discovery of new thiazolyl pe...
Despite the availability of many culture-based antibiotic screening methods, the lack of sensitive automated methods to identify functional molecules directly from microbial cells still limits the search for new biologically active compounds. The effectiveness of antibiotic detection is influenced by the solubility of the assayed compounds, indicat...
Many volatile organic compounds (VOCs) are found in indoor environment as products of microbial metabolism. In damp indoor environments, fungi are associated with poor air quality. Some epidemiological studies have suggested that microbial VOCs have a negative impact on human health. Our study was designed to provide a reductionist approach toward...
Thiazolyl peptides are a class of highly rigid trimacrocyclic compounds consisting of varying but large numbers of thiazole rings. The need for new antibacterial agents to treat infections caused by resistant bacteria prompted a reinvestigation of this class, leading to the previous isolation of thiazolyl peptides, namely, thiazomycin (5) and thiaz...
Thiazolyl peptides are a class of thiazole-rich macrocyclic potent antibacterial agents. Recently, we described thiazomycin, a new member of thiazolyl peptides, discovered by a thiazolyl peptide specific chemical screening. This method also allowed for the discovery of a new thiazolyl peptide, thiazomycin A, which carries modification in the oxazol...
Bacterial resistance to antibiotics, particularly to multiple drug resistant antibiotics, is becoming cause for significant concern. The only really viable course of action is to discover new antibiotics with novel mode of actions. Thiazolyl peptides are a class of natural products that are architecturally complex potent antibiotics but generally s...
Nodulisporic acid A (NAA), an insecticidal indole diterpene, is produced by the fungus Nodulisporium sp. Since indole-3-glycerolphosphate is the precursor of the indole moiety of NAA, it is suggested that the activity of tryptophan synthetase may play a role in NAA biosynthesis. To investigate this hypothesis, the tryptophan synthetase gene TRP1 of...
Today we use many drugs produced by microorganisms. However, when these drugs were discovered it was found that the yields were low and a substantial effort had to be put in to develop commercially viable processes. A key part of this endeavor was the studies of the nutritional and the engineering parameters. In this chapter, the basic principles o...
Thiazomycin is a novel thiazolyl peptide closely related to nocathiacin I. It was isolated from Amycolatopsis fastidiosa by chemical and biological screening. Thiazomycin showed highly potent bactericidal activity against Gram-positive pathogens (MIC range 0.002 approximately 0.064 microg/ml) and did not show cross-resistance to clinically relevant...
Thiazolyl peptides are a class of rigid macrocyclic compounds richly populated with thiazole rings. They are highly potent antibiotics but none have been advanced to clinic due to poor aqueous solubility. Recent progress in this field prompted a reinvestigation leading to the isolation of a new thiazolyl peptide, thiazomycin, a congener of nocathia...
Thiazolyl peptides are a class of rigid macrocyclic compounds richly populated with thiazole rings. They are highly potent antibiotics but none have been advanced to clinic due to poor aqueous solubility. Recent progress in this field prompted a reinvestigation leading to the isolation of a new thiazolyl peptide, thiazomycin, a congener of nocathia...
Production of two related indole diterpenes (differing by a dimethyl leucine side chain) by Aspergillus alliaceus was improved through several pilot scale fermentations. Media were optimized through focus primarily on initial increases, as well as mid-cycle additions, of carbon and nitrogen sources. Fermentation conditions were improved by varying...
Several protocols for bacterial isolation and techniques for aerobic plate counting rely on the use of a spiral plater to deposit concentration gradients of microbial suspensions onto a circular agar plate to isolate colony growth. The advantage of applying a gradient of concentrations across the agar surface is that the original microbiological sa...
Culture pelleting and morphology has a strong influence on process productivity and success for fungal and filamentous bacterial cultures. This impact is particularly evident with early phase secondary metabolite processes with limited process definition. A compilation of factors affecting filamentous or pelleting morphology described in the litera...
The importance of pneumocandin BO as the fermentation-derived starting material for the antifungal drug candidate, MK-991, along with the identification of our production strain as Z. arboricola (ATCC 20868) as CBS prompted a search for other strains of Z. arboricola or Zalerion species with improved titres or that might produce natural pneumocandi...
Pneumocandin D0 (9), a new member of the echinocandin class of antifungal agents, has been isolated as a minor constituent from fermentation broths of the filamentous fungi Zalerion arboricola (ATCC 20957). The structure of 9 has been determined mainly on the basis of spectroscopic analysis and by comparison with published data for similar compound...
Zalerion arboricola ATCC 20868 produces pneumocandin A0 (L-671,329), a cyclic hexapeptide with a dimethylmyristic acid side chain. This compound has anti-candida and anti-pneumocystis activities. We were interested in looking for other related compounds produced by this organism. To facilitate this search, a simple medium (S2) composed of D-mannito...
Citations
... Nocathiacins and thiazomycins are recent entries in the thiazolyl peptide class with potent activity. 10,13 They are endowed with structural features that are reasonably amenable to chemical modifications; therefore, we undertook semi-synthetic modification of the most abundant of the natural products, nocathiacin I (1) and thiazomycin (4) (Figure 1), leading to the synthesis of a series of highly potent, broad-spectrum Gram-positive agents with improved water solubility and in vivo activity. 6,7 Seven structurally diverse analogs (2-3, 5-9, Figure 1), with modifications on the pyridyl hydroxyl group and/or replacement of the dehydroalanine amide with polar substituents, were selected for this study. ...
... In the last two decades, three cyclic hexapeptides with antifungal properties, caspofungin, micafungin, and anidulafungin, have received approval for clinical use ( Figure 2). All three antifungal agents demonstrated clinical efficacy in treating invasive candidiasis and various types of systemic fungal infections [19]. These three agents target the 1,3-β-glucan synthase involved in the cell wall glucan synthesis. ...
... The fruit fly Drosophila melanogaster has been used as an in vivo model to examine the mechanisms of action underlying 1-octen-3-olinduced deleterious effects in humans Inamdar et al. 2013;Inamdar, Masurekar, andBennett 2010, 2014;Yin et al. 2015). This model of invertebrate presents many characteristics that enable its use for toxicological studies (Alaraby et al. 2016;Demir 2021;Demir et al. 2022). ...
... 11−16 HRMS allows for the prediction of the molecular formula, based on the isotopic distribution pattern of the parent ions and their daughter ions. 17,18 This method also suggests a possible daughter ion chemical formula, which helps with the diagnosis of fragmentation loss in parent to daughter ions. ...
... Optically-active α-amino acids bearing heterocyclic side chains are of great utility in various fields, not only individually, but especially incorporated in more complex structures, such as peptides and proteins, for the creation of new peptide-based pharmaceutical drug candidates [1,2]. The thiazole core frequently appears in many natural peptides, such as the Bleomycin family (anti-cancer glycopeptide antibiotics) [3], Nocathiacins [4], Aeruginazoles [5], and Thiazomycins [6] (a new class of cyclic thiopeptide antibiotics). The biological potential of this heterocyclic ring system is actually exploited for the design of new thiazole-bearing biologically active compounds, many of them being introduced in therapy. ...
... Active strains discovered by high-throughput screening of MTP fermentations usually can be scaled up in shake flasks or static flask cultures in order to isolate and characterize active components (6,21,34). The 96-well or 24-well MTP format permits creative and high-throughput experimentation with fungi that normally is resource limited and cumbersome with conventional shake flask systems (1,6,7,8). ...
Reference: Miniaturization of Fermentations
... In this study, the effect of frass extract obtained from BSFL reared on the Gainesville diet on the mycelial growth of seven important plant pathogens was evaluated in vitro using the dual culture overlay assay, a well-established technique to test microorganisms for their ability to produce antimicrobial compounds/antibiotics [34]. Dual culture overlay assays clearly showed that the frass extract contained microorganism-producing compound(s) that strongly inhibit(s) the mycelial growth of fungal plant pathogens of the phyla Ascomycota (A. solani, B. cinerea, F. oxysporum, S. sclerotiorum) and Basidiomycota (R. solani), as well as plant pathogens of the class oomycetes (P. ...
... The cyclic lipopeptides pneumocandin A and pneumocandin B produced by the fungus Glarea lozoyensis contain (10S,12R)-10,12-dimethyltetradecanoic acid (331). [492][493][494]. The liquid culture broth of Pseudomonas sp. ...
... While mold spores and particles can be toxic via ingestion or inhalation and can irritate any exposed part of the body, inhaling low molecular weight mold VOCs (mVOCs) may constitute an important initiating exposure that has been largely overlooked [10]. Supporting this possibility is an experiment in which developing fruit flies exposed to mVOCs at levels comparable to those reported in moldy buildings [65] exhibited Parkinson's disease-like symptoms [55,56]. Importantly, when wet, any organic materials such as carpets, fabrics, paper, plywood, compressed wood, and gypsum board can grow mold within 48-72 h. ...
... Thiopeptides are members of the ribosomally synthesized and post-translationally modified peptide family of natural products, which are widely distributed in the genera of Streptomyces, Nocardia, Micromonospora, Micrococcus, Actinoplanes, Amycolatopsis, Planobispora, and so on [1][2][3][4][5][6][7][8]. Thiopeptides are well known for their potent antibacterial activities against clinically-problematic Grampositive pathogens such as methicillin-resistant Staphylococcus aureus (MRSA), vancomycin-resistant enterococci (VRE), penicillin-resistant Streptococcus pneumonia (PRSP), and Clostridium difficile [1,9,10]. ...