Peter B. Best’s research while affiliated with University of Pretoria and other places

This paper examines sightings of dwarf minke whales during the SOWER cruises. A total of 12 sightings were made between 1994/95 and 2003/04, across a relatively wide latitude (37°S–62°S) but limited longitude, between IWC Management Area III (0–70°E) and V (130°E–170°W), with no sightings in Area I (0–60°W) or II (60°W–120°W). Despite this low number of sightings, most were close to the Antarctic Convergence at 58°S–65°S. There may be some seasonality in their southbound migration.

Little is known about the biology of pygmy (Kogia breviceps) and dwarf (K. sima) sperm whales as these animals are difficult to observe in the wild. However, both species strand frequently along the South African, Australian and New Zealand coastlines, providing samples for these otherwise inaccessible species. The use of DNA samples from tissue and DNA extracted from historical material, such as teeth and bone, allowed a first analysis of the population structure of both species in the Southern Hemisphere.

Highly polymorphic single tandem repeat loci (STR, also known as microsatellite loci) remain a familiar, cost efficient class of markers for genetic analyses in ecology, behavior and conservation. We characterize a new universal set of ten STR loci (from 28 potential candidate loci) in seven baleen whale species, which are optimized for PCR amplification in two multiplex reactions along with a Y chromosome marker for sex determination. The optimized, universal set of STR loci provides an ideal starting point for new studies in baleen whales aimed at individual-based and population genetic studies, and facilitates data sharing among research groups. Data from the new STR loci were combined with genotypes from other published STR loci to assess the power to assign parentage (paternity) using exclusion in four species: fin whales, humpback whales, blue whales and bowhead whales. We argue that parentage studies should present a power analysis to demonstrate that the specific data are sufficiently informative to assign parentage with statistical rigor.

The southern right whale (Eubalaena australis; SRW) population in South Africa’s coastal waters has experienced marked changes since 2009, including altered feeding and migration behaviour, and decreased calving success. At the same time, anthropogenic activities in the area have increased. Based on this, an update on SRW mortalities and related anthropogenic factors is warranted. Building on the published information of Best et al. (2001a), data were collated on all SRW mortalities as well as non‐fatal ship‐strikes and entanglements along the South African coast between 1999 and 2019. A total of 97 SRW mortalities were recorded, including three that did not result in a stranding, of which the majority were classified as calves of the year. Most of these occurred on the Western Cape coast between the months of July to November, coinciding with the seasonal presence of the species in South African coastal waters. Eleven of these mortalities could be attributed to ship‐strikes whereas three mortalities related to entanglements. A total of 98 non‐fatal incidents, including 16 ship‐strikes and 82 entanglements with SRWs, were recorded in South Africa between 1999 and 2019. Ship‐strikes occurred mainly around the area of Cape Town harbour. Entanglements occurred mainly in rock‐lobster gear and bather‐protection nets in the Western Cape and KwaZulu‐Natal provinces respectively, although the latter did not occur between 2015–2019 attributable to the replacement of over 70% of the nets by drumlines, and the removal of the remaining nets during whale season. In general, the incidence of SRW mortalities and entanglements decreased post‐2007, coinciding with the decreased presence of SRWs along the South African coast. Available data show a relatively low rate of fatal entanglements and ship‐strikes, although this may be underestimated due to the opportunistic nature of the collated data. In view of the population growth rate and the increased anthropogenic activities in South African coastal waters, continued and improved monitoring (e.g. through a more systematic reporting system) of these incidents is crucial to ensure accurate knowledge‐based management decisions in the future. Possible mitigation measures aimed at reducing anthropogenic interactions are mooted.

As species recover from exploitation, continued assessments of connectivity and population structure are warranted to provide information for conservation and management. This is particularly true in species with high dispersal capacity, such as migratory whales, where patterns of connectivity could change rapidly. Here we build on a previous long-term, large-scale collaboration on southern right whales (Eubalaena australis) to combine new (nnew) and published (npub) mitochondrial (mtDNA) and microsatellite genetic data from all major wintering grounds and, uniquely, the South Georgia (Islas Georgias del Sur: SG) feeding grounds. Specifically, we include data from Argentina (npub mtDNA/microsatellite=208/46), Brazil (nnew mtDNA/microsatellite=50/50), South Africa (nnew mtDNA/microsatellite=66/77, npub mtDNA/microsatellite=350/47), Chile-Peru (nnew mtDNA/microsatellite=1/1), the Indo-Pacific (npub mtDNA/microsatellite=769/126), and SG (npub mtDNA/microsatellite=8/0, nnew mtDNA/microsatellite=3/11) to investigate the position of previously unstudied habitats in the migratory network: Brazil, SG and Chile-Peru. These new genetic data show connectivity between Brazil and Argentina, exemplified by weak genetic differentiation and the movement of one genetically identified individual between the South American grounds. The single sample from Chile-Peru had a mtDNA haplotype previously only observed in the Indo-Pacific and had a nuclear genotype that appeared admixed between the Indo-Pacific and South Atlantic, based on genetic clustering and assignment algorithms. The SG samples were clearly South Atlantic, and were more similar to the South American than the South African wintering grounds. This study highlights how international collaborations are critical to provide context for emerging or recovering regions, like the SG feeding ground, as well as those that remain critically endangered, such as Chile-Peru.

Southern right whale (Eubalaena australis) population structure can be viewed as a migratory network of winter calving/socialising and summer feeding grounds. Here we investigate the position of the Chile-Peru wintering ground (n = 1) and the South Georgia feeding ground (n = 15) in the broader migratory network, using mitochondrial DNA (mtDNA) and nuclear microsatellite data (nDNA) from all major wintering grounds. This includes new data from Brazil (n = 60) and South Africa (n = 88), as well as published data from across the species’ circumpolar distribution (nDNA = 222; mtDNA = 1327). The single sample from Chile-Peru had a mtDNA haplotype previously only observed in the Indo-Pacific and had a nuclear genotype that appeared admixed between the Indo-Pacific and South Atlantic, based on genetic clustering and assignment algorithms. The South Georgia samples were clearly South Atlantic, based on both genetic differentiation and clustering analyses. As a group, South Georgia was more similar to the Southwest Atlantic wintering grounds (Brazil, Argentina) than to the South African wintering ground, and showed significant genetic differentiation from the latter. However, the weak genetic differentiation amongst the South Atlantic wintering grounds meant that population assignment methods were unable to resolve the likely winter association of the South Georgia samples. This may be overcome using additional loci and/or by limiting comparisons to nursery areas within wintering grounds.

The demography of baleen whales and their prey during the past 30 thousand years was assessed to understand the effects of past rapid global warming on marine ecosystems. Mitochondrial and genome-wide DNA sequence variation in eight baleen whale and seven prey species revealed strong, ocean-wide demographic changes that were correlated with changes in global temperatures and regional oceanographic conditions. In the Southern Ocean baleen whale and prey abundance increased exponentially and in apparent synchrony, whereas changes in abundance varied among species in the more heterogeneous North Atlantic Ocean. The estimated changes in whale abundance correlated with increases in the abundance of prey likely driven by reductions in sea-ice cover and an overall increase in primary production. However, the specific regional oceanographic environment, trophic interactions and species ecology also appeared to play an important role. Somewhat surprisingly the abundance of baleen whales and prey continued to increase for several thousand years after global temperatures stabilized. These findings warn of the potential for dramatic, long-term effects of current climate changes on the marine ecosystem. One Sentence Summary The effects of past global warming on marine ecosystems were drastic, system-wide and long-lasting.