Paweł Kubica’s research while affiliated with Jagiellonian University and other places

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Publications (96)


Distinct cellular uptake patterns of two anticancer unsymmetrical bisacridines and their metabolic transformation in tumor cells
  • Article

January 2025

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26 Reads

Journal of Pharmaceutical and Biomedical Analysis

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Paweł Kubica

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Phenolic compound profiling of S. henryi extracts from suspension cultures grown in bioreactor; b-base peak.
Cont.
Phytochemical Profiling and Biological Activities of Extracts from Bioreactor-Grown Suspension Cell Cultures of Schisandra henryi
  • Article
  • Full-text available

November 2024

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42 Reads

Molecules

Plant biotechnology creates opportunities for the cultivation of plants regardless of their natural habitats, which are often protected or difficult to access. Maintaining suspension cell cultures in bioreactors is an advanced part of biotechnological research that provides possibilities for obtaining plant tissue on a large scale. In this study, the suspension culture cultivation of a Chinese endemic plant, Schisandra henryi, in a stirred tank bioreactor was elaborated for the first time. The phytochemical profile of the tissue extracts was determined with UHPLC-MS/MS for the lignans (fifteen dibenzocyclooctadiene lignans, one aryltetralin lignan, and two neolignans) and UHPLC-DAD-ESI-MS3 for the phenolic compounds (procyanidins and their derivatives and catechin). The maximum total lignan content of 1289 µg/100 g DW was detected for the extracts from suspensions cultured in a bioreactor for over 10 days. For the phenolic compounds, catechin was the dominant compound (390.44 mg/100 g DW). The biological activity of the extracts was tested too. To determine antioxidant potential we used DPPH (2,2-diphenyl-1-picrylhydrazyl), ABTS (2,2′-azino-bis(3-ethylbenzothiazoline-6-sulfonic acid), Molybdenum reduction, and β-carotene bleaching tests. The inhibition activity of the S. henryi extract on the enzymes responsible for skin aging, hyaluronidase and tyrosinase, was assessed with spectrophotometry. The cytotoxic activity of the extracts was estimated on human ovarian SKOV-3, cervical HeLa, and gastric AGS cancer cells and non-cancer, normal fibroblasts by an MTT (3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide) assay. The results showed the great potential of the obtained cell biomass extracts. The results of the antioxidant tests indicated their strong ability to reduce the level of free radicals, similarly to that of ascorbic acid, as well as the weak capacity to protect lipids from oxidation. Moreover, anticancer potential, particularly on the cervical and gastric cancer cells, was confirmed too.

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Content of phenolic acids [mg/100 g d.w.] ± SD in extracts of A. × prunifolia in vitro cultures supplemented with phenylalanine on the 10th day of the growth cycle. * p < 0.05.
Content of phenolic acids [mg/100 g d.w.] ± SD in extracts of A. × prunifolia in vitro cultures supplemented with cinnamic acid at "point 0". * p < 0.05.
Content of phenolic acids [mg/100 g d.w.] ± SD in extracts of A. × prunifolia in vitro cultures supplemented with cinnamic acid on the 10th day of the growth cycle. * p < 0.05.
Content of phenolic acids [mg/100 g d.w.] ± SD in extracts of A. × prunifolia in vitro cultures supplemented with benzoic acid on the 10th day of the growth cycle. * p < 0.05.
Content of phenolic acids [mg/100 g d.w.] ± SD in extracts of A. × prunifolia in vitro cultures supplemented with benzoic acid at "point 0". * p < 0.05.
Efficient Production of Some Bioactive Depsides and Simple Phenolic Acids by Microshoots of Aronia × Prunifolia (Purple Aronia) Agitated Cultures as the Result of Feeding Strategy with Four Different Biogenetic Precursors

September 2024

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10 Reads

Molecules

A precursor feeding strategy was used for the first time in agitated microshoot cultures of Aronia × prunifolia. This strategy involved the addition of biogenetic precursors of simple phenolic acids (phenylalanine, cinnamic acid, and benzoic acid) and depsides (caffeic acid) into the culture media, with an assessment of its effect on the production of these bioactive compounds. The in vitro cultures were maintained in Murashige–Skoog medium (1 mg/L BAP and 1 mg/L NAA). Precursors at five concentrations (0.1, 0.5, 1.0, 5.0, and 10.0 mmol/L) were fed into the medium at the time of culture initiation (point “0”) and independently on the 10th day of growth cycles. The contents of 23 compounds were determined in methanolic extracts of biomass collected after 20 days of growth cycles using an HPLC method. All extracts contained the same four depsides (chlorogenic, neochlorogenic, rosmarinic, and cryptochlorogenic acids) and the same four simple phenolic acids (protocatechuic, vanillic, caffeic, and syringic acids). Chlorogenic and neochlorogenic acids were the predominant compounds in all extracts (max. 388.39 and 263.54 mg/100 g d.w.). The maximal total contents of all compounds were confirmed after feeding with cinnamic acid (5 mmol/L, point “0”) and caffeic acid (10 mmol/L, point “0”), which caused a 2.68-fold and 2.49-fold increase in the contents of the estimated compounds vs. control cultures (603.03 and 558.48 mg/100 g d.w., respectively). The obtained results documented the efficacy of the precursor feeding strategy in enhancing the production of bioactive compounds in agitated cultures of A. × prunifolia and suggest a potential practical application value.


Figure 2. Sum of phenolic compounds (mg × 100 g −1 DW) in D. peltata, D. indica, D. regia, and D. binata cultivated in solid medium, agitated cultures, and temporary immersion bioreactor Plantform TM . Lower case letters indicate statistical significance of means according to two-way ANOVA, post hoc Tukey test at p < 0.05; the bar represents the standard deviation; DW-dry weight.
Accumulation of phenolic acids (mg × 100 g −1 DW) in D. peltata, D. indica, D. regia, and D. binata cultivated in solid medium, agitated cultures, and temporary immersion bioreactor Plantform TM . Different letters indicate statistical significance of means according to two-way ANOVA, post hoc Tukey test at p < 0.05; SD-standard deviation, DW-dry weight.
Accumulation of flavonoids and 1,4-naphtoquinones (mg × 100 g −1 DW) in D. peltata, D. indica, D. regia, and D. binata cultivated in solid medium, agitated cultures, and temporary im- mersion bioreactor Plantform TM . Different letters indicate statistical significance of means according to two-way ANOVA, post hoc Tukey test at p < 0.05; SD-standard deviation, DW-dry weight, nd-not detected.
Effect of Agitation and Temporary Immersion on Growth and Synthesis of Antibacterial Phenolic Compounds in Genus Drosera

September 2024

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58 Reads

Biomolecules

Sundews (Drosera sp.) are the source of biologically active secondary metabolites: phenolic acids, flavonoids, and 1,4-naphtoquinones. Because obtaining them from the natural environment is impossible (rare and endangered species), in this study modifications of traditional tissue cultures grown in solid medium (SM), such as agitated cultures (ACs) (cultures in liquid medium with rotary shaking) and temporary immersion bioreactors PlantformTM (TIB), were used for multiplication of four sundew species: Drosera peltata, Drosera indica, Drosera regia, and Drosera binata, with simultaneously effective synthesis of biologically active phenolic compounds. Each species cultivated on SM, AC, and TIB was tested for biomass accumulation, the content of total phenols and selected phenolic derivative concentrations (DAD-HPLC), the productivity on of phenolic compounds, as well as its antibacterial activity against two human pathogens: Staphylococcus aureus and Escherichia coli. The results showed that the type of culture should be selected for each species separately. Phytochemical analyses showed that the synthesis of secondary metabolites from the groups of phenolic acids, flavonoids, and 1,4-naphthoquinones can be increased by modifying the cultivation conditions. D. regia turned out to be the richest in phenolic compounds, including 1,4-naphtoquinones: plumbagin and ramentaceone. Extracts from D. indica and D. regia tissue showed strong antibacterial activity against both pathogens. It has also been shown that the growth conditions of sundews can modify the level of secondary metabolites, and thus, their biological activity.


Agitated and temporary immersion bioreactor cultures of Reynoutria japonica Houtt. as a rich source of phenolic compounds

August 2024

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75 Reads

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2 Citations

Plant Cell Tissue and Organ Culture

Reynoutria japonica Houtt. (Japanese knotweed) is an invasive plant belonging to the Polygonaceae family. However, being native to East Asia, it has been used in natural medicine for ages because of its broad range of biological activity. Although R. japonica is known as a rich source of phenolic compounds, plant biomass collected from the field may be contaminated with toxic elements like heavy metals, and the level of metabolite accumulation depends on environmental conditions. Therefore, the aim of this study was to derive Japanese knotweed tissue cultures and investigate biomass production and phenolic compound synthesis in in vitro conditions. Plants were cultivated in a traditional agar-solidified medium, in a liquid medium with rotary shaking (agitated culture), and in a temporary immersion bioreactors Plantform™, as well as in soil (ex vitro conditions). Analyses of the growth index and dry weight accumulation were performed on the collected material. In the extracts obtained from examined plants, qualitative and quantitative analysis of phenolic derivatives using DAD-HPLC was conducted to determine the sum of phenolic compounds, as well as the quantity of selected phenolic acids, catechins, and other flavonoids. Results have shown that agitated cultures and temporary immersion bioreactors increased biomass accumulation compared to solid medium cultures. Tissue cultures of R. japonica had increased synthesis of phenolic compounds compared to plants from ex vitro conditions. Shoots and roots from agitated cultures were 2.8- and 3.3-fold richer in catechins, respectively, compared to plants cultivated in soil. Based on the obtained results it can be concluded that agitated and bioreactor cultures are the best source of Japanese knotweed biomass rich in valuable secondary metabolites.


Morphological appearance of tested types in vitro cultures of S. henryi: A callus culture; B suspension culture; C agar microshoot culture; D microshoot agitated culture; E microshoot culture in PlantForm bioreactor
Heatmap comparing the quantitative analysis and antioxidant potential results of S. henryi in vitro cultures extracts. The heatmap illustrates the varying levels of different compounds across different sample types in a biological study. The color gradient reflects the concentration or presence of specific compounds (neochlorogenic acid, caffeic acid, protocatechuic acid, catechin), total polyphenol content (TCP), TEAC (by FRAP method), total antioxidant potential (by DPPH method), and chelating ability (FIC), within each sample type
Phenolic compound profiling and antioxidant potential of different types of Schisandra henryi in vitro cultures

May 2024

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121 Reads

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3 Citations

Applied Microbiology and Biotechnology

Schisandra henryi is an endemic species of medicinal potential known from traditional Chinese medicine. As part of this study, a complex biotechnological and phytochemical assessment was conducted on S. henryi with a focus on phenolic compounds and antioxidant profiling. The following in vitro cultures were tested: microshoot agar and callus, microshoot agitated, and suspension, along with the microshoot culture in PlantForm bioreactors. Qualitative profiling was performed by ultra-high-performance liquid chromatography with a photodiode array detector coupled with ion-trap mass spectrophotometry with electrospray ionization and then quantitative analysis by high-performance liquid chromatography with a diode array detector using standards. In the extracts, mainly the compounds from procyanidins were identified as well as phenolic acids (neochlorogenic acid, caffeic acid, protocatechuic acid) and catechin. The highest content of phenolic compounds was found for in vitro agar microshoot culture (max. total content 229.87 mg/100 g DW) and agitated culture (max. total content 22.82 mg/100 g DW). The max. TPC measured using the Folin-Ciocalteu assay was equal to 1240.51 mg GAE/100 g DW (agar microshoot culture). The extracts were evaluated for their antioxidant potential by the DPPH, FRAP, and chelate iron ion assays. The highest potential was indicated for agar microshoot culture (90% of inhibition and 59.31 nM/L TEAC, respectively). The research conducted on the polyphenol profiling and antioxidant potential of S. henryi in vitro culture extracts indicates the high therapeutic potential of this species. Key points • Different types of S. henryi in vitro cultures were compared for the first time. • The S. henryi in vitro culture strong antioxidant potential was determined for the first time. • The polyphenol profiling of different types of S. henryi in vitro cultures was shown.


Agitated cultures and temporary immersion bioreactors are effective modes of cultivation for Reynoutria japonica Houtt. and stimulate synthesis of phenolic compounds

April 2024

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79 Reads

Reynoutria japonica Houtt. (Japanese knotweed) is an invasive plant belonging to the Polygonaceae family. However, being native to east Asia, it has been used in natural medicine since ages because of broad range of biological activity. Although, R. japonica is known as a rich source of phenolic compounds plant biomass collected from the field may be contaminated with toxic elements like heavy metals. Therefore, the aim of this study was to investigate biomass production and phenolic compounds synthesis in Japanese knotweed from in vitro cultures. Plants were cultivated in a traditional agar-solidified medium, in a liquid medium with rotary shaking (agitated culture), and in a temporary immersion bioreactors Plantform™, as well as in soil (ex vitro conditions). Analyses of the growth index and dry weight accumulation were performed on the collected material. In the extracts obtained from examined plants, qualitative and quantitative analysis of phenolic derivatives using DAD-HPLC was conducted to determine the sum of phenolic compounds, as well as the quantity of selected phenolic acids, catechins and other flavonoids. Results have showed that agitated cultures and temporary immersion bioreactors increased biomass accumulation compared to solid medium cultures. Tissue cultures of R. japonica had increased synthesis of phenolic compounds. Shoots and roots from agitated cultures were 2.8- and 3.3-fold richer in catechins, respectively, compared to plants from ex vitro conditions. Based on the obtained results it can be concluded that agitated and bioreactor cultures are the best source of Japanese knotweed biomass rich in valuable secondary metabolites.



Comparative Assessment of Lignan Profiling and Biological Activities of Schisandra henryi Leaf and In Vitro PlantForm Bioreactor-Grown Culture Extracts

March 2024

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72 Reads

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2 Citations

Pharmaceuticals

This research’s scope encompassed biotechnological, phytochemical, and biological studies of Schisandra henryi, including investigations into its in vitro microshoot culture grown in PlantForm bioreactors (temporary immersion systems, TISs), as well as extracts from leaves of the parent plant, focusing on anti-inflammatory, antioxidant, anticancer, and antimicrobial activities. The phytochemical analysis included the isolation and quantification of 17 compounds from dibenzocyclooctadiene, aryltetralin lignans, and neolignans using centrifugal partition chromatography (CPC), HPLC-DAD, and UHPLC-MS/MS tandem mass spectrometry with triple quadrupole mass filter methods. Higher contents of compounds were found in microshoots extracts (max. 543.99 mg/100 g DW). The major compound was schisantherin B both in the extracts from microshoots and the leaves (390.16 and 361.24 mg/100 g DW, respectively). The results of the anti-inflammatory activity in terms of the inhibition of COX-1, COX-2, sPLA2, and LOX-15 enzymes indicated that PlantForm microshoot extracts showed strong activity against COX-1 and COX-2 (for 177 mg/mL the inhibition percentage was 76% and 66%, respectively). The antioxidant potential assessed using FRAP, CUPRAC, and DPPH assays showed that extracts from microshoot cultures had 5.6, 3.8, and 3.3 times higher power compared to extracts from the leaves of the parent plant, respectively. The total polyphenol content (TPC) was 4.1 times higher in extracts from the in vitro culture compared to the leaves. The antiproliferative activity against T-cell lymphoblast line Jurkat, breast adenocarcinoma cultures (MCF-7), colon adenocarcinoma (HT-29), and cervical adenocarcinoma (HeLa), showed that both extracts have considerable effects on the tested cell lines. The antimicrobial activity tested against strains of Gram-positive and Gram-negative bacteria and fungi showed the highest activity towards H. pylori (MIC and MBC 0.625 mg/mL).


Citations (70)


... It is worth noting that some substances, such as polydatin and coumaroyl quinic acid, were found in multiple isoforms. Compounds were identified by comparison with their standards, mass spectra (MS/MS), retention time (Rt), and their UV spectra reported in the literature [17,[26][27][28][29]. ...

Reference:

Analysis of Phenolic Compounds of Reynoutria sachalinensis and Reynoutria japonica Growing in the Russian Far East
Agitated and temporary immersion bioreactor cultures of Reynoutria japonica Houtt. as a rich source of phenolic compounds

Plant Cell Tissue and Organ Culture

... The phenolic compounds have been estimated before in S. henryi microshoot and callus cultures grown on an agar medium, microshoots cultured in PlantForm bioreactors, as well as in suspensions and agitated microshoot cultures maintained in Erlenmayer flasks [36]. The qualitative assays of the suspension cultures confirmed eight compounds from the polyphenol group, mainly procyanidins, but also protocatechuic acid derivatives and catechin. ...

Phenolic compound profiling and antioxidant potential of different types of Schisandra henryi in vitro cultures

Applied Microbiology and Biotechnology

... In these systems, the appropriate membrane is a selective barrier, ensuring its functionality and effectiveness. This role is fulfilled by, among others, polymeric membranes of different structures and compositions made of polyvinyl chloride, bacterial cellulose or cellulose acetate [5,6]. ...

Polymeric porous membranes as solid support and protective material in microextraction processes: A review
  • Citing Article
  • April 2024

TrAC Trends in Analytical Chemistry

... There is a small amount of research on S. henryi that focuses on the analysis of the chemical composition of stem extracts and cytotoxic activity [11]. Our team's research on S. henryi focused on optimizing in vitro culture processes and analyzing the chemical composition of plant extracts [12,13]. Research show that the chemical profile of S. henryi is similar to that of another species from the Schisandraceae family, Schisandra chinensis (Turcz.) ...

Comparative Assessment of Lignan Profiling and Biological Activities of Schisandra henryi Leaf and In Vitro PlantForm Bioreactor-Grown Culture Extracts

Pharmaceuticals

... The DESs, a new generation of extraction solvents, have recently been proposed as a novel analytical method for AA quantification in plant-based meat substitutes using a subsequent LC-MS/MS analysis. Osiecka et al. (2024) applied this technique by mixing eugenol and thymol to obtain a solution with a high affinity for AA (prior analysis of solvent suitability). After analyzing the precision and accuracy of the method, the research demonstrated that AA could be successfully analyzed, with a coefficient of determination of 0.9952, a recovery rate of 83-120 %, and repeatability (RSD) below 5 % (Osiecka et al., 2024). ...

Plant-based meat substitute analysis using microextraction with deep eutectic solvent followed by LC-MS/MS to determine acrylamide, 5-hydroxymethylfurfural and furaneol

Analytical and Bioanalytical Chemistry

... For instance, during the in vitro culture of Linum usitatissimum, distinct light conditions influence both lignan accumulation and biological activities (Bose et al. 2020). Targeted metabolomics associated to multivariate statistics was used to investigate the polyphenol composition from in vitro grape shoot cultures from different varieties grown on selected culture media (Sharafan et al. 2023). As a result, the genotype had the greatest impact on metabolic content, while the composition of the medium had a lesser influence. ...

Shoot Cultures of Vitis vinifera (Vine Grape) Different Cultivars as a Promising Innovative Cosmetic Raw Material—Phytochemical Profiling, Antioxidant Potential, and Whitening Activity

Molecules

... They allow for the detection of even trace amounts of substances in the finished product, which, in turn, enables accurate quality control of food and pharmaceutical products. These techniques also allow for the monitoring of the purity of pharmaceutical products and newly synthesized bioactive molecules as potential new drug candidates, among other applications [1][2][3][4][5][6][7][8][9][10]. Pharmacopoeias also recommend chromatographic techniques for drug analysis [11,12]. ...

Optimization of a Fabric Phase Sorptive Extraction protocol for the isolation of six bisphenols from juice pouches to be analysed by high performance liquid chromatography coupled with diode array detector
  • Citing Article
  • September 2023

Journal of Chromatography A

... Due to the fact that disposable baby diapers have to be used daily, it seems significant to control this product with respect to the occurrence of compounds that can migrate from the diaper into the child's body, such as parabens and bisphenols. Limited studies exist that present methodologies and results of parabens and bisphenols determination in disposable baby diapers [10,11]. ...

Exposure scenario and risk assessment of infants and newborns to bisphenols and their derivatives from diapers
  • Citing Article
  • August 2023

Ecotoxicology and Environmental Safety

... Reports from the Federal Commission for the Protection against Sanitary Risks (COFEPRIS) have identified 33 chemical compounds in e-liquid samples, highlighting potential health risks but lacking quantitative data. As e-liquids become more prevalent, particularly with fourth-generation devices that allow easy modification of volume, flavor, and nicotine concentration, precise dosage regulation remains challenging [24,25]. ...

Determination of Glycerol, Propylene Glycol, and Nicotine as the Main Components in Refill Liquids for Electronic Cigarettes

Molecules

... Kubica et al. have applied UA solvent extraction for extraction of nineteen phenolic compounds from powdered milk and infant and toddler ready to feed milk with recoveries ranging from 31% to 120%. This extraction approach was only seldom applied for the purpose of extraction of EPs from milk [36]. ...

Analysis of bisphenols and their derivatives in infant and toddler ready-to-feed milk and powdered milk by LC MS/MS
  • Citing Article
  • April 2023

Journal of Food Composition and Analysis