Paul K. Boss’s research while affiliated with University of Adelaide and other places

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Publications (124)


Insights into the Uptake, Distribution, and Metabolism of 3-Isobutyl-2-hydroxypyrazine in Grapevine Using a Stable Isotope Tracer
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April 2023

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34 Reads

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2 Citations

Journal of Agricultural and Food Chemistry

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Paul K Boss

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Methoxypyrazines (MPs) are potent aroma compounds that have been predominately studied in grape berries but can also be detected in other vine tissues. The synthesis of MPs in berries from hydroxypyrazines by VvOMT3 is well established, but the origin of MPs in vine tissues that have negligible VvOMT3 gene expression is unknown. This research gap was addressed through the application of stable isotope tracer 3-isobutyl-2-hydroxy-[2H2]-pyrazine (d2-IBHP) to the roots of Pinot Meunier L1 microvines and high-performance liquid chromatography-tandem mass spectrometry (HPLC-MS/MS) quantification of HPs from grapevine tissues following a novel solid-phase extraction method. Four weeks post-application, d2-IBHP and its O-methylated product 3-isobutyl-2-methoxy-[2H2]-pyrazine (d2-IBMP) were present in excised cane, berry, leaf, root, and rachis material. Translocation of d2-IBHP and d2-IBMP was investigated, but results were inconclusive. Nonetheless, knowledge that d2-IBHP, and potentially d2-IBMP, are translocated from roots to other vine organs, including the berries, could provide opportunities for controlling MP accumulation in grapevine tissues pertinent to winemaking.


Schematic outlining the components that the rachis material was segmented into prior to extraction and analysis of methoxypyrazines.
Estimated marginal means of IBMP (ng/kg of rachis ± SE) in the peduncle, top rachis, bottom rachis, and pedicel from Shiraz rachis sampled during the 2019/20 and 2021/22 vintages from the Barossa Valley, considering the interaction effect between rootstock (own roots and Ramsey) and berry maturity (flowering ( green), veraison ( red), and harvest ( purple)). Bars sharing the same letter within a component are not significantly different (linear mixed model, α = 0.05, Bonferroni-adjusted). Note. Pedicel material was not sampled at flowering. Concentrations (ng/kg rachis) were calculated from ng/kg of component values (Figure S3 of the Supplementary Material) by considering component contribution (% w/w) to total rachis weight (Figure S2 of the Supplementary Material). Note the different y-axis scale for pedicel.
Estimated marginal means of IBMP (ng/kg rachis ± SE) in the peduncle, top rachis, bottom rachis, and pedicel of Shiraz rachis sampled during the 2019/20 and 2021/22 vintages from the Barossa Valley at (flowering ( green), veraison ( red), and harvest ( purple)) considering the three-way interaction effect between component, vintage, and berry maturity. Bars sharing the same letter between the plots are not significantly different (linear mixed model, α = 0.05, Bonferroni-adjusted). Note. Pedicel material was not sampled at flowering. Concentrations (ng/kg rachis) were calculated from ng/kg of component values (Figure S4 of the Supplementary Material) by considering component contribution (% w/w) to total rachis weight (Figure S2 of the Supplementary Material).
Estimated marginal means for IBMP concentration (ng/kg rachis ± SE) in Shiraz rachis for control ( yellow) and box ( charcoal) treatments at harvest (2022) considering the simple main effect of rootstock (Ramsey and own roots). Bars sharing the same letter within the same plot are not significantly different (linear mixed model, α = 0.05, Bonferroni-adjusted). Note. IBMP concentrations (ng/kg rachis) were calculated by adding the IBMP concentration of the respective components together for every biological replicate while considering component proportion (% w/w) (Figure S2 of the Supplementary Material).
Estimated marginal means of IBMP concentration (a) (ng/kg rachis ± SE) and (b) (ng/kg component ± SE) in different Shiraz rachis components at harvest from control ( yellow) and box ( charcoal) grape bunches grown in the Barossa Valley (2022) considering the interaction between rachis component and light. Bars sharing the same letter within the same plot are not significantly different (linear mixed model, α = 0.05, Bonferroni-adjusted). Values for Figure 5(a) were calculated from Figure 5(b) by considering the proportion (% w/w) of individual rachis components to total rachis fresh weight (Figure S2 of the Supplementary Material).

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Distribution of 3-Isobutyl-2-methoxypyrazine across Rachis Components of Vitis vinifera Shiraz and Cabernet Sauvignon
  • Article
  • Full-text available

April 2023

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90 Reads

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3 Citations

Rootstock can significantly alter the concentration of methoxypyrazines (MPs) in the bunch stem (rachis) of Vitis vinifera L. cv. Cabernet Sauvignon and Shiraz, which has implications for winemaking and wine style. The distribution of MPs across the rachis is an important consideration, but such information was not available. This study aimed to address this research question by comparing MP concentrations in different rachis components throughout grape maturation and in the absence of ambient light. Shiraz and Cabernet Sauvignon bunches were sampled throughout development, segmented into four components (peduncle, top rachis, bottom rachis, and pedicel), and 3-isobutyl-2-methoxypyrazine (IBMP) was quantified in each. For both cultivars, IBMP showed a negative correlation with grape maturity, with concentrations in pedicel at harvest being significantly higher than other rachis components. Additionally, light exclusion significantly increased IBMP concentrations in all rachis segments. The concentration of IBMP varied significantly between different rachis components. The greatest concentrations were measured in the pedicel, which also contributed the largest proportion among the components to total rachis by weight. Due to elevated IBMP concentrations in rachis and the difficulties in excluding matter other than grape from a fermentor, the presence of pedicel during fermentation could produce Shiraz and Cabernet Sauvignon wines with higher concentrations of MPs, thereby potentially increasing vegetal sensory characteristics.

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Figure 4. Bar charts showing the changes in the bunch-to-bunch variability (absolute residuals) in response to crop load and irrigation regimes for (A,B) absorbance at 520 nm (A520), (C,D) berry fresh weight (FW), (E,F) 3-isobutyl-2-methoxypyrazine (IBMP), (G,H) malic acid, (I,J) methyl cellulose precipitable (MCP) tannin, (K,L) pH, and (M,N) total soluble solids (TSS) for each sampling date (days post-flowering, dpf) in the 2019/2020 (A,C,E, etc.) and 2020/2021 (B,D,F, etc.) seasons. Bars and error bars represent the mean ± SEM (n = 6 vines per treatment). Different lower-case letters on a given sampling date represent significant differences between treatments (linear mixed model, α = 0.05, Bonferroni-adjusted). DL = deficit irrigation/low crop load, DN = deficit irrigation/normal crop load, FL = full irrigation/low crop load, FN = full irrigation/normal crop load (grower control).
Figure 5. Biplots showing the first two principal components (PC1 and PC2) for PCA of (A,B) average values and (C,D) log of absolute residuals (res) for absorbance at 520 nm (A520), berry fresh weight (FW), 3-isobutyl-2-methoxypyrazine (IBMP), malic acid (malic), methyl cellulose precipitable (MCP) tannin, pH, and total soluble solids (TSS) grouped by sampling date (days-post-flowering, dpf) in 2019/2020 (A,C) and 2020/2021 (B,D).
Figure 8. Changes in the bunch-to-bunch variability determined by GHI score according to (A) vintage and sampling date (dpf) per season for (B) 2019/2020 and (C) 2020/2021, and in response to crop load and irrigation regime (n = 6 vines per treatment) for each sample date in (D) 2019/2020, and (E) 2020/2021. Bars/points and associated error bars represent the mean ± SEM of GHI score. Different lower-case letters for a given year or sampling date represent significant differences between sampling dates or treatments (linear mixed model, α = 0.05, Bonferroni-adjusted). DL = deficit irrigation/low crop load, DN = deficit irrigation/normal crop load, FL = full irrigation/low crop load, FN = full irrigation/normal crop load (grower control).
Figure 10. Commercial Block in Coonawarra (background image Copyright (2022), Google) comprised of vines planted in 1976 (west-side) and 1996 (east-side) showing (A) sampled vines (orange dots), block boundary with blocks split by vine age (outlined with orange boxes), and Treatment Block (blue box), (B) Variation in soil electrical conductivity (ECa, mS/m) surveyed by EM38 in 2011, and (C) Normalised difference vegetation index (NDVI) acquired at 63 dpf (January 2021) at 80 cm resolution prior to scaling. Images generated using QGIS version 3.18.0.
Grape Heterogeneity Index: Assessment of Overall Grape Heterogeneity Using an Aggregation of Multiple Indicators

March 2023

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191 Reads

Plants

Uniform grape maturity can be sought by producers to minimise underripe and/or overripe proportions of fruit and limit any undesirable effects on wine quality. Considering that grape heterogeneity is a multifaceted phenomenon, a composite index summarising overall grape heterogeneity was developed to benefit vineyard management and harvest date decisions. A grape heterogeneity index (GHI) was constructed by aggregating the sum of absolute residuals multiplied by the range of values from measurements of total soluble solids, pH, fresh weight, total tannins, absorbance at 520 nm (red colour), 3-isobutyl-2-methoxypyrazine, and malic acid. Management of grape heterogeneity was also studied, using Cabernet Sauvignon grapes grown under four viticultural regimes (normal/low crop load, full/deficit irrigation) during the 2019/2020 and 2020/2021 seasons. Comparisons of GHI scores showed grape variability decreased throughout ripening in both vintages, then significantly increased at the harvest time point in 2020, but plateaued on sample dates nearing the harvest date in 2021. Irrigation and crop load had no effect on grape heterogeneity by the time of harvest in both vintages. Larger vine yield, leaf area index, and pruning weight significantly increased GHI score early in ripening, but no significant relationship was found at the time of harvest. Differences in the Ravaz index, normalised difference vegetation index, and soil electrical conductivity did not significantly change the GHI score.


Use of Machine Learning with Fused Spectral Data for Prediction of Product Sensory Characteristics: The Case of Grape to Wine

February 2023

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79 Reads

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12 Citations

Foods

Generations of sensors have been developed for predicting food sensory profiles to circumvent the use of a human sensory panel, but a technology that can rapidly predict a suite of sensory attributes from one spectral measurement remains unavailable. Using spectra from grape extracts, this novel study aimed to address this challenge by exploring the use of a machine learning algorithm, extreme gradient boosting (XGBoost), to predict twenty-two wine sensory attribute scores from five sensory stimuli: aroma, colour, taste, flavour, and mouthfeel. Two datasets were obtained from absorbance-transmission and fluorescence excitation-emission matrix (A-TEEM) spectroscopy with different fusion methods: variable-level data fusion of absorbance and fluorescence spectral fingerprints, and feature-level data fusion of A-TEEM and CIELAB datasets. The results for externally validated models showed slightly better performance using only A-TEEM data, predicting five out of twenty-two wine sensory attributes with R2 values above 0.7 and fifteen with R2 values above 0.5. Considering the complex biotransformation involved in processing grapes to wine, the ability to predict sensory properties based on underlying chemical composition in this way suggests that the approach could be more broadly applicable to the agri-food sector and other transformed foodstuffs to predict a product’s sensory characteristics from raw material spectral attributes.



Methoxypyrazine concentrations in the grape bunch rachis of Vitis vinifera L. Cv Shiraz: Influence of rootstock, region and light

December 2022

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40 Reads

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5 Citations

Food Chemistry

Vitis vinifera L. cv Shiraz appears unable to synthesise 3-alkyl-2-methoxypyrazines (MPs) in the berry, but can still produce significant concentrations in rachis. MPs are readily extracted from rachis during fermentation, producing Shiraz wines with uncharacteristic "green" flavours. Recently, rootstocks were shown to significantly alter MP concentrations in Cabernet Sauvignon rachis compared to own-rooted varieties, but whether Shiraz followed a similar trend required investigation. This study considered the effect of thirteen rootstocks on the concentrations of 3-isobutyl-2-methoxypyrazine (IBMP), 3-isopropyl-2-methoxypyrazine (IPMP), and 3-sec-butyl-2-methoxypyrazine (SBMP) in the rachis of Shiraz bunches sampled during multiple vintages across several Australian growing regions. Although IBMP was the most abundant, all measured MP concentrations were significantly affected by vintage, rootstock, and region. In addition, vine vigour showed positive correlations with IBMP, which were attributed to changes in canopy coverage impacting rachis light exposure. This hypothesis was explored with light exclusion trials, which significantly increased rachis IBMP concentrations.


Machine learning for classifying and predicting grape maturity indices using absorbance and fluorescence spectra

September 2022

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57 Reads

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21 Citations

Food Chemistry

Absorbance-transmission and fluorescence excitation emission matrix (A-TEEM) spectroscopy was investigated as a rapid method for predicting maturity indices using Cabernet Sauvignon grapes produced under four viticulture treatments during two growing seasons. Machine learning models were developed with fused spectral data to predict 3-isobutyl-2-methoxypyrazine (IBMP), pH, total tannins (Tannin), total soluble solids (TSS), and malic and tartaric acids based on the results from traditional analysis methods. Extreme gradient boosting (XGB) regression yielded R² values of 0.92-0.96 for IBMP, malic acid, pH, and TSS for externally validated (Test) models, with partial least squares regression being superior for TSS prediction (R² = 0.97). R² values of 0.64-0.81 were achieved with either approach for tartaric acid and Tannin predictions. Classification of grape maturity, defined by quantile ranges for red colour, IBMP, malic acid, and TSS, was investigated using XGB discriminant analysis, providing an average of 78 % correctly classified samples for the Test model.




FIGURE 3. Principal component analysis of acetate esters, organic acids and glycerol for individual fermentations in Sauvignon blanc wine fermentations.
FIGURE 4. Viable cell densities of Concerto or S. cerevisiae after 72 h in Chardonnay juice.
Yeast strains used in this study.
Acetate ester content (µg/L) of monoculture and co-inoculated fermentations in Sauvignon blanc juice.
Effect of ‘loss of function’ mutation in SER1 in wine yeast: fermentation outcomes in co-inoculation with non-Saccharomyces

April 2022

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52 Reads

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5 Citations

OENO One

In wine fermentation, improved wine complexity and sensorial properties can arise from the use of non-Saccharomyces yeast. Generally less alcohol tolerant, such strains often do not finish fermentation, therefore requiring a second inoculation with the more robust Saccharomyces cerevisiae, usually added on Day 3. This sequential approach affords non-Saccharomyces time to make an impact before being overtaken by S. cerevisiae. However, two inoculations are inconvenient; therefore the identification of a slow growing S. cerevisiae strain that can be used in a single co-inoculation with the non-Saccharomyces yeast is highly attractive. In this study we investigated the use of the naturally occurring ‘loss of function’ SER1 variant, identified in a Sake yeast, for the purposes of carrying out co-inoculated wine fermentations. The SER1-232(G > C; G78R) change was introduced into the commonly used wine strain, EC1118, via CRISPR/Cas9 editing. In a chemically defined grape juice medium, the SER1(G78R) mutant grew and fermented more slowly and increased acetic acid, succinic acid and glycerol concentrations. Simultaneous inoculation with the slower-growing mutant with a Metschnikowia pulcherrima or Lachancea thermotolerans strain in sterile Sauvignon blanc juice resulted in differences in sensorial compounds, most likely derived from the presence of non-Saccharomyces yeasts. The EC1118 SER1 (G78R) mutant completed fermentation with M. pulcherrima, MP2, and in fact improved the viability of MP2 compared to when it was used as a monoculture. The SER1 (G78R) mutant also promoted both the growth of the SO2-sensitive L. thermotolerans strain, Viniflora® Concerto™, in a juice high in SO2 and its subsequent dominance during fermentation. In co-fermentations with wild-type EC1118, the Concerto™ population was substantially reduced with no significant changes in wine properties. This research adds to our understanding of the use of a novel slow-growing S. cerevisiae yeast in wine fermentations co-inoculated with non-Saccharomyces strains.


Citations (81)


... [104] In addition, recent studies showed that IBHP-d 2 is found in all organs of grape vines after it is added to the roots, suggesting that the translocation of MPs to berry tissue may be inhibited, but not the translocation of HPs. [105] A translocation of IBMP via the phloem was examined using the phloem sap of excised leaves of bell pepper plants. For phloem collection, methods like spontaneous exudation through simple incision, ethylenediaminetetraacetic acid(EDTA)facilitated phloem exudate collection or aphid stylectomy have been developed. ...

Reference:

3‐Alkyl‐2‐Methoxypyrazines: Overview of Their Occurrence, Biosynthesis and Distribution in Edible Plants
Insights into the Uptake, Distribution, and Metabolism of 3-Isobutyl-2-hydroxypyrazine in Grapevine Using a Stable Isotope Tracer
  • Citing Article
  • April 2023

Journal of Agricultural and Food Chemistry

... These results suggest that both early and late leaf removal are effective in reducing methoxypyrazine concentrations in Pinot noir stems. This may be associated with the downregulation of VvOMT3 gene expression when exposed to ambient light, which may reduce IBMP concentration in grape tissues (Dunlevy et al., 2013;Sanders et al., 2023). A recent research on Shiraz and Cabernet Sauvignon stems also showed that light exclusion significantly increased IBMP concentrations in grape stems (Sanders et al., 2023). ...

Distribution of 3-Isobutyl-2-methoxypyrazine across Rachis Components of Vitis vinifera Shiraz and Cabernet Sauvignon

... These spectroscopic techniques have been applied to the combined determination of food composition, textural features, and food preferences, presented as promising tools to model food-human interactions [26]. Several reviews addressing the prediction of quality-related properties have been published in recent years, focusing on one specific beverage or food [25,27,28] or on a collection of fresh [26,29,30] or processed [31][32][33] commodities. Some reviews focused only on quality and safety [34][35][36][37]; others included sensory analysis but only of specific foods [38][39][40]. ...

Use of Machine Learning with Fused Spectral Data for Prediction of Product Sensory Characteristics: The Case of Grape to Wine

Foods

... Despite the fact that rootstocks are utilized primarily in response to biotic and abiotic challenges in specific vineyards, it has been demonstrated that rootstocks alter the aroma quantity and components of grapes [7,[9][10][11][12]. Recent research has shown that rootstocks significantly vary 3-alkyl-2-methoxypyrazines (MPs) concentrations in Cabernet Sauvignon rachis compared to own-rooted varieties [9]. ...

Methoxypyrazine concentrations in the grape bunch rachis of Vitis vinifera L. Cv Shiraz: Influence of rootstock, region and light
  • Citing Article
  • December 2022

Food Chemistry

... The process of bottle aging involves a series of chemical reactions. The mechanisms of the oxidation reaction [5,[21][22][23][24][25][26][27], esterification reaction, and hydrolysis reaction [28,29] during the aging process of wine bottles have been widely studied. Recently, more attention has been paid to the mechanism of the Strecker reaction [30][31][32], the influences of closures [14,33], and the alterations of specific compounds which can affect the flavour of wine [12,[34][35][36]. ...

Effect of Simulated Shipping Conditions on Sensory Attributes and Volatile Composition of Commercial White and Red Wines
  • Citing Article
  • September 2010

American Journal of Enology and Viticulture

... The full-length XGB model slightly outperformed the XGB model using selected wavelengths, indicating better feature selection capability than the GA. Similar previous studies in different domains, such as the prediction and classification of grape maturity [50], crop intensity mapping [51], and waxy phenotype classification in cassava seeds [13], also highlighted the strong performance of XGB. The results aligned with a report [29], which compared XGB with four other deep learning models, including a 1D-CNN, finding that XGB exhibited a 50% lower average relative performance (a lower value is better) than the deep learning models while converging in a shorter runtime. ...

Machine learning for classifying and predicting grape maturity indices using absorbance and fluorescence spectra
  • Citing Article
  • September 2022

Food Chemistry

... Notably, P. pastoris and S. cerevisiae are highly favored expression systems for producing recombinant proteins due to their benefits, including post-translational modifications, fast growth, secretory protein expression, and streamlined genetic recombination operations. This underscores the critical importance of lipases produced from yeast in diverse industrial applications [54,55]. Environmental conditions contaminated with oil, such as vegetable oil waste and decomposing food, provide plentiful reservoirs of lipolytic yeasts, particularly C. rugosa, known for their high lipase production, whether in their extracellular or immobilized states, have been recognized as important biocatalysts that demonstrate versatility in catalyzing a wide range of enzyme processes. ...

Effect of ‘loss of function’ mutation in SER1 in wine yeast: fermentation outcomes in co-inoculation with non-Saccharomyces

OENO One

... The 3-alkyl-2-methoxypyrazines (MPs) are natural odorants, which provide the aroma qualities of herbs and vegetables for many plant-derived foods. [1][2][3] In recent years, MPs have attracted attention in wines because of their extremely low sensory detection threshold and high olfactory activity. An excessive MPs concentration in grapes and wines may have a negative influence on the sensory evaluation of wine aroma. ...

Rootstock, Vine Vigor, and Light Mediate Methoxypyrazine Concentrations in the Grape Bunch Rachis of Vitis vinifera L. cv. Cabernet Sauvignon
  • Citing Article
  • April 2022

Journal of Agricultural and Food Chemistry

... An excessive MPs concentration in grapes and wines may have a negative influence on the sensory evaluation of wine aroma. 3,4 The concentration of MPs in wines is less affected by the wine making and aging processes, and mainly originates from the grape itself, therefore being closely related to the variety and maturity of the grapes. 5,6 For example, MPs are common in Cabernet Sauvignon, Carmenere, Sémillon and Sauvignon Blanc wines. ...

Evidence that methoxypyrazine accumulation is elevated in Shiraz rachis grown on Ramsey rootstock, increasing ‘green’ flavour in wine
  • Citing Article
  • April 2022

... During fermentation, several substances are formed, either extracted from the grapes or released during the process. The sensory profile indicates the evaluation of aroma, mouthfeel, taste and appearance, while the chemical profile quantifies phenolic compounds, total and volatile acidity, pH, color index, dry extract, reducing sugars, volatile compounds and many other substances present in wines (Hranilovic et al., 2018;Merkytė et al., 2020;Diez-Ozaeta, Lavilla, & Amarita 2021, Lin et al., 2022. ...

Influence of Kazachstania spp. on the chemical and sensory profile of red wines
  • Citing Article
  • December 2021

International Journal of Food Microbiology