Pamela C. Rasmussen’s research while affiliated with Cornell Lab of Ornithology and other places

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Publications (83)


Comments on the species limits of certain North American birds, part 1
  • Article
  • Full-text available

December 2024

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177 Reads

Bulletin of the British Ornithologists Club

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Shawn M. Billerman

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[...]

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R. Terry Chesser
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Fig. 2. Mitochondrial cytochrome b tree. Posterior probabilities of major nodes are shown near the nodes. An asterisk * indicates a posterior probability of 1.00. The time axis is shown under the tree, and the node bars indicate the 95% highest posterior density of the node age.
Fig. 3. Species tree constructed using *BEAST. Posterior probabilities of major nodes are shown near the nodes. An asterisk * indicates a posterior probability of 1.00. The time axis is shown under the phylogeny, and the node bars indicate the 95% highest posterior density of the node age.
Fig. 6. Visualized summary of similarity in genetics, song, plumage, and morphometrics between taxa in the genus Tarsiger.
Fig. 7. (A) Male T. cyanurus; (B) Male T. albocoeruleus; (C) Male T. indicus; (D) T. formosanus (Photographed by A-Craig Brelsford/shanghaibirding.com, B-Xianting Wang, C\D-Vincent Wang).
Posterior Probability for support for distinct species of Bayesian Phylogenetics and Phylogeography analysis of different taxa in Tarsiger. Results of different values of θ are shown.
Cryptic species in a colorful genus: Integrative taxonomy of the bush robins (Aves, Muscicapidae, Tarsiger) suggests two overlooked species

July 2022

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862 Reads

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17 Citations

Molecular Phylogenetics and Evolution

Several cryptic avian species have been validated by recent integrative taxonomic efforts in the Sino-Himalayan mountains, indicating that avian diversity in this global biodiversity hotspot may be underestimated. In the present study, we investigated species limits in the genus Tarsiger, the bush robins, a group of montane forest specialists with high species richness in the Sino-Himalayan region. Based on comprehensive sampling of all 11 subspecies of the six currently recognized species, we applied an integrative taxonomic approach by combining multilocus, acoustic, plumage and morphometric analyses. Our results reveal that the isolated north-central Chinese populations of Tarsiger cyanurus, described as the subspecies albocoeruleus but usually considered invalid, is distinctive in genetics and vocalisation, but only marginally differentiated in morphology. We also found the Taiwan endemic T. indicus formosanus to be distinctive in genetics, song and morphology from T. i. indicus and T. i. yunnanensis of the Sino-Himalayan mountains. Moreover, Bayesian species delimitation using BPP suggests that both albocoeruleus and formosanus merit full species status. We propose their treatment as 'Qilian Bluetail' T. albocoeruleus and 'Taiwan Bush Robin' T. formosanus, respectively.



Morphology, vocalizations, and mitochondrial DNA suggest that the Graceful Prinia is two species

April 2021

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774 Reads

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6 Citations

Ornithology

Prinias (Cisticolidae: Prinia) are resident warblers of open areas across Africa and Asia and include many polytypic species whose species limits have not been seriously reevaluated recently. Based on an integrative taxonomic analysis of morphology, song, and mitochondrial DNA (mtDNA), we suggest that 2 species should be recognized in the Graceful Prinia (Prinia gracilis) complex. In addition, our morphological analyses show the existence of a well-marked undescribed form in southeastern Somalia, which we name herein as a new subspecies. Prinia gracilis is a small, drab, long-tailed species with streaking above and plain pale underparts that has been suggested to fall into 2 groups: the southwestern nominate group (from Egypt to Oman) and the northeastern lepida group (from Turkey through India). However, the characters presented to justify this grouping are variable and show a mosaic pattern, and whether genetic and vocal differences exist is unknown. We found consistent between-group song differences, with the nominate group giving consistently longer inter-phrase intervals, whereas the members of the lepida group sing an essentially continuous reel. An mtDNA tree suggests a deep split between the nominate and lepida groups, with a coalescence time between these clades of ~ 2.2 million years ago. Vocal and mtDNA analyses provided evidence that the northeastern Arabian Peninsula taxon carpenteri belongs to the lepida group. We found that, of all the morphological characters proposed, only proportions and tail barring and spotting relatively consistently distinguish the 2 groups. However, these characters strongly suggest that the eastern Arabian Peninsula is populated by taxa of both the gracilis and lepida groups, in different areas, but we lack genetic and bioacoustic data to corroborate this. Although further study is needed in potential contact zones, we suggest that 2 species should be recognized in the P. gracilis complex, and we propose the retention of the English name Graceful Prinia for P. gracilis sensu stricto, while we suggest that P. lepida be known as Delicate Prinia.


Citations (67)


... The New World jays (Passeriformes: Corvidae; hereafter NWJ) are a monophyletic group whose geographical origin has been traced to the eastern Palearctic with a subsequent radiation in Mesoamerica and later throughout the entire American continent (Fernando et al. 2017). Several NWJ clades, including the one grouping the formerly recognized genera Psilorhinus and Calocitta, recently included within the speciose genus Cyanocorax (Chesser et al. 2024), have evolved in lowland forests (Bonaccorso et al. 2010). These taxa are characterized by clear patterns of geographical variation in morphology and coloration (Dos Anjos 2009, 2020. ...

Reference:

Ecological niche conservatism and diversification in a clade of New World jays from the tropical lowland forests of Mesoamerica
Sixty-fifth Supplement to the American Ornithological Society’s Check-list of North American Birds

Ornithology

... Using the posterior distributions of these demographic parameters we calculated four derived quantities before generating point estimates of these quantities for each population of each species: Note: Species codes are the 4-letter alpha codes from the Institute for Bird Population (IBP) in accordance with the 64th supplement from the American Ornithological Society (Chesser et al., 2023). N.P is number of presences in SDMs and the two area under the curve (AUC pa ) columns indicate the AUC pa values of the generalized linear model (GLM) and boosted regression tree (BRT) species distribution models when distinguishing between presences and pseudoabsences. ...

Sixty-fourth Supplement to the American Ornithological Society's Check-list of North American Birds

Ornithology

... Intergradation between brunneicollis and T. musculus in an area of close approach in north-central Oaxaca has not been definitively established (Monroe 1968, Binford 1989. Formerly included extralimital species T. cobbi Chubb, 1909 [Cobb's Wren], which was separated (Chesser et al. 2013) on the basis of morphological, ecological, genetic, and vocal differences (Woods 1993, Campagna et al. 2012 Notes.-Formerly considered conspecific with T. aedon, but separated based on deep genomic divergence (Klicka et al. 2023) and corresponding differences in vocalizations and morphology (Oberholser 1904, Sosa-López and Mennill 2014, Sosa-López et al. 2016 Notes.-Formerly ...

Fifty-Fourth Supplement to the American Ornithologists' Union Check-list of North American Birds

Ornithology

... A total of 210 sites were ultimately selected for surveying to overlap with long-term vegetation monitoring plots undertaken by CM (see below). For each detected species, we assigned a migratory status using Cornell Lab's Birds of the World (https://birdsoftheworld.org/bow/ home) and previously published classifications (Regos et al., 2018; Appendix S1) and used international bird code abbreviations following the American Ornithological Society's North American bird checklists (Chesser et al., 2022). For the purposes of this study, we only used breeding bird data collected between 2017 and 2021 for model development (but see spatial prediction, below, for details on model validation efforts). ...

Sixty-third supplement to the American Ornithological Society’s Check-list of North American Birds

Ornithology

... Vocalization is a bioacoustic trait that is important in reproductive and territorial activities [73,74]. In avian SCZs, vocal differentiation may result from natural selection or drift, and contributes to the formation of reproductive isolation [75,76]. Natural selection may reduce the fitness of hybrid individuals, and vocalization may cause further differentiation through the reinforcement of prezygotic reproductive isolation [77,78]. ...

Cryptic species in a colorful genus: Integrative taxonomy of the bush robins (Aves, Muscicapidae, Tarsiger) suggests two overlooked species

Molecular Phylogenetics and Evolution

... This filtering method reduced the number of rare/uncommon species, which tended to be recorded more frequently in CBC data, while preserving the number of species that only occur in one season or another. Lastly, current taxonomic nomenclature (English common names and genus species names) were cross-referenced against the most current American Ornithological Society (AOS) checklist of north and middle American birds (Chesser et al. 2021). Our final species pool consisted of 238 species (File S1). ...

Sixty-second Supplement to the American Ornithological Society’s Check-list of North American Birds

Ornithology

... Traditionally, taxonomy has been based on morphological criteria, as these were the only criteria that could be studied on museum specimens. However, avian species delimitation is now typically based on a body of evidence integrating morphological, acoustic, genetic and other data (e.g., Alström et al. 2007Alström et al. , 2008Alström et al. , 2015aAlström et al. , 2016Alström et al. , 2021avan Els & Norambuena 2018;Sangster 2022). Vocalizations are especially important in avian systematics as they can reflect species divergence and differentiation (Alström & Ranft 2003) but also directly contribute to reproductive barriers (Price 2008), although differences in vocalizations are not systematically linked to evolutionary divergences (Potvin et al. 2013). ...

Morphology, vocalizations, and mitochondrial DNA suggest that the Graceful Prinia is two species

Ornithology

... The work of Tobias, et al. [31] was rated positively by many authors in the past [76][77][78][79][80][81][82][83]. Hurrell [84] described the Tobias method as follows: "The Tobias method is a fast, reliable points-based system that assesses differing characteristics of an animal. ...

Species limits and taxonomy in birds
  • Citing Article
  • April 2021

Ornithology

... Another aspect of the issue that appeared in the Washington Post comments was an openness to change some eponyms when the person commemorated is deemed today to be especially egregious even by the standards of that era. This is already being done in some cases (e.g., Driver & Bond 2021;Chesser et al. 2021). This view was also represented among comments on Guedes et al. (2023), although changes of this sort to scientific names are at present not possible, except for zoological names under extreme restrictions (see Anonymous 1999, Article 79). ...

Addendum to the Sixty-first Supplement to the American Ornithological Society’s Check-list of North American Birds

Ornithology

... The Mexican duck was considered as a species in the 1957 American Ornithologists Union Check-list (5th Edition) until it was removed and included as a subspecies of the mallard (Anas plathyrhynchos), being identified with the scientific name Anas plathyrhynchos diazi in 1983 (American Ornithologists Union Check-list, 6th Edition). This process led to a controversy regarding the taxonomy of the species until 2020, when the American Ornithologists Society (AOS) finally defined it as Anas diazi species [3][4][5][6][7][8][9][10][11]. Due to its occurrence in small populations and the destruction of its habitat, the Mexican duck was protected by the U.S. Endangered Species Act as an endangered species in 1967, from which it was later removed by the United States Fish and Wildlife Service in 1978 as a result of its classification as a subspecies of the mallard. ...

Sixty-first Supplement to the American Ornithological Society's Check-list of North American Birds

Ornithology