P.H. Graham's research while affiliated with University of Minnesota Duluth and other places

Publications (84)

Article
Full-text available
Background and aims Prairie restoration aims to create self-sustaining, resilient prairies that ameliorate biodiversity loss and soil deterioration associated with conversion of native grasslands to agriculture. Legumes are a key component of the nitrogen-limited prairie ecosystem. Evidence suggests that lack of suitable rhizobia may explain legume...
Article
The taxonomic affiliations of nineteen root-nodule bacteria isolated from the common bean (Phaseolus vulgaris L.) in Mexico, Ecuador and Brazil were investigated by analyses of 16S rRNA and of four protein-coding housekeeping genes. One strain from Mexico could be assigned to Rhizobium etli and two from Brazil to R. leucaenae, whereas another from...
Article
Calcium improves the ability of many rhizobia to survive and persist in acid soils, but the mechanism responsible for this phenomenon has not been studied in detail. Here, we present data examining the combined effects of pH and calcium on the cell envelope of Rhizobium strains that differ in pH tolerance. The effect of pH and calcium on solute upt...
Article
The low nodule occupancy achieved by superior nitrogen-fixing inoculant strains is a problem in the production of many traditional legume species, including Phaseolus vulgaris. Cultivars that select for inoculant strains, rather than nodulate with ineffective indigenous rhizobia, offer one approach to the resolution of this problem. In this study w...
Article
*MicroRNAs (miRNAs) play a pivotal role in post-transcriptional regulation of gene expression in plants. Information on miRNAs in legumes is as yet scarce. This work investigates miRNAs in an agronomically important legume, common bean (Phaseolus vulgaris). *A hybridization approach employing miRNA macroarrays - printed with oligonucleotides comple...
Article
The increase in human population and the spread of agriculture over the past 150 years have transformed the landscape in west-central Minnesota into a mosaic of agricultural fields and urban land, leaving only remnants of the once dominant prairie ecosystem. Limited natural habitat in this fragmented landscape threatens the diversity and abundance...
Article
It is generally accepted that there are two major centers of genetic diversification of common beans (Phaseolus vulgaris L.): the Mesoamerican (Mexico, Colombia, Ecuador and north of Peru, probably the primary center), and the Andean (southern Peru to north of Argentina) centers. Wild common bean is not found in Brazil, but it has been grown in the...
Article
Full-text available
Illinois bundleflower [Desmanthus illinoensis (Michx.) MacMillan] has potential as a pasture and grain legume in the Midwestern USA, but has proven to be somewhat problematic in inoculation response. We identified inoculant-quality Rhizobium strains from among 120 isolates trapped from 12 sites within the native range of Illinois bundleflower, then...
Article
Full-text available
Illinois bundleflower (Desmanthus illinoensis (Michx.) Macmillan) has potential as a grain and forage legume for the American Midwest. Inoculant-quality rhizobia for this legume have been identified but not previously characterized. Rhizobia trapped from 20 soils in the natural range of the Illinois bundleflower had characteristics that placed them...
Article
Coffee (Coffea arabica) production provides a source of income for small-scale farmers in Chiapas, Mexico. Organic production regulations prohibit the use of synthetic nitrogen (N) fertilizers, therefore farmers are dependent upon N-sources accepted by organic certification agencies. In the state of Chiapas, little is known about effectiveness of r...
Article
The leguminous tree genus Inga is thought to be critical for providing N to certified organic coffee shrubs that commonly grow beneath its shade in the state of Chiapas, Mexico. Organic certification prohibits use of synthetic N fertilizers, necessitating understanding of the Inga–rhizobia symbiosis. The objectives of this study were to: (1) establ...
Article
Habitat fragmentation affects the biodiversity and function of aboveground organisms in natural ecosystems but has not been studied for effects on belowground species. In this paper, we consider the diversity of the rhizobia associated with the indigenous legume Dalea purpurea in 3 residual prairie areas in Minnesota and Iowa. Using Dalea purpurea...
Article
Until recently, beans (Phaseolus vulgaris L.) grown in Minnesota were rarely inoculated. Because of this, we hypothesized that bean rhizobia collected in Minnesota would either share characteristics identifiable with Rhizobium etli of Mesoamerican or Andean origin, introduced into the region as seed-borne contaminants, or be indigenous rhizobia fro...
Article
The inoculation of indigenous legumes used in revegetation and wetland reconstruction activities in Minnesota presents problems not found in more traditional seedings. Few studies have sought inoculant-quality rhizobia for the legumes involved or examined their interaction in an environment that involves a number of different legumes seeded simulta...
Article
Full-text available
Symbiotic N2 fixation capacity may affect productivity of the perennial legume Illinois bundleflower [Desmanthus illinoensis (Michx.) MacMill. ex B.L. Rob. & Fernald]. Our objective was to estimate N2 fixation of three Illinois bundleflower accessions managed for forage. Herbage yield ranged from 1.02 Mg ha(-1) to 3.69 Mg ha(-1) in Year 1, and 2.99...
Article
Full-text available
All of the elements needed to significantly enhance N 2 fixation in grain legumes by plant breeding are currently available, but attention to this problem has been limited. This paper considers genetic variation in traits associated with nodulation and N 2 fixation and how they might be utilized. It also considers the role of rhizobia in an effecti...
Article
Edaphic factors constrain bean production in most areas where this crop is grown. They include nutrient constraints particularly N and P deficiency, soil acidity including Al and manganese toxicity, and drought. The Bean/Cowpea Collaborative Research Support Program (CRSP) has supported research on edaphic constraints to bean production since its i...
Article
Full-text available
Legumes, broadly defined by their unusual flower structure, podded fruit, and the ability of 88% of the species examined to date to form nodules with rhi- zobia (de Faria et al., 1989), are second only to the Graminiae in their importance to humans. The 670 to 750 genera and 18,000 to 19,000 species of legumes (Polhill et al., 1981) include importa...
Article
Kura clover ( Trifolium ambiguum M. Bieb.) is a promising persistent forage legume, whose use is currently limited by establishment difficulties in part attributable to nodulation problems. In this study, we phenotypically characterized 18 Kura clover rhizobia including 12 newly isolated North American strains using 111 growth tests. The symbiotic...
Article
Dry bean root rot, caused by Fusarium solani f. sp. phaseoli, in association with Rhizoctonia solani and Fusarium oxysporum is an increasing problem in Minnesota. A standard seed treatment (SST) has failed to effectively control the disease and resistant cultivars are unknown. The objectives of this study were to determine the effect of the biocont...
Article
An initial screening of 51 genotypes of Phaseolus vulgaris identified bean accessions with good growth and nodule development at low levels of soil phosphorus (P). Seeds of these accessions were inoculated with Rhizobium, and grown in a peat-based medium to which rock phosphate was added so as to supply 5 or 140 μM P in the soil solution. Harvests...
Chapter
The importance of biological nitrogen fixation (BNF) to world food security is unquestionable. Since the dawn of farming, symbioses capable of BNF have been instrumental in both supplying food and improving soil health (van Kessel, Hartley 2000). Today Earth’s 6 billion people consume an average of nearly 11 g N per day or about 24 Mt annually (Fin...
Article
Kura clover (Trifolium ambiguum M.B.) is a persistent, rhizomatous forage legume; however, its use is currently limited by slow establishment. We determined the effects of rhizobial inoculation and N fertilization on kura clover growth and N2 fixation in the seeding year. Kura clover was seeded with or without a commercial rhizobial inoculant and w...
Article
Common beans (Phaseolus vulgaris L.) have centers of origin in both Mesoamerica and Andean South America, and have been domesticated in each region for perhaps 5000 years. A third major gene pool may exist in Ecuador and Northern Peru. The diversity of the rhizobia associated with beans has also been studied, but to date with an emphasis on the Mes...
Article
Full-text available
Kura clover (Trifolium ambiguum M.B.) is a persistent rhizomatous forage legume, whose use in the U.S.A. is limited by establishment difficulties in part attributable to nodulation problems. In this study, soil was collected from established stands of Kura clover growing in 9 diverse North American environments. Rhizobia were plant-trapped using Ku...
Article
The quantification of symbiotic N2 fixation by legumes is essential to determine their impact on N budgets. Kura clover (Trifolium ambiguum M.B.) and birdsfoot trefoil (Lotus corniculatus L.) are two promising pasture legumes for which such estimates are scarce. Dinitrogen fixation by 2- and 3-yr-old stands of these species was determined at two lo...
Article
Recent reports point to a decline in agricultural dependence on symbiotic nitrogen (N2) fixation, and in the use of rhizobial inoculants. This review contrasts the potential contribution of biologically fixed N to intensive and extensive agricultural systems, and examines opportunities for continued major contributions in the latter. It identifies...
Article
Active N2 fixation in soybean [Glycine max (L.) Merr.] in Minnesota is limited by cool early-season soil temperatures and by postflowering nodule senescence. This study examined variation in onset of nodule senescence among Maturity Group I soybean cultivars and sought traits associated with this variation. Host genotype markedly affected onset of...
Article
Twenty-two rhizobial strains isolated from the root nodules of two Chinese peanut cultivars (Arachis hypogaea L. Tianfu no. 3 and a local cultivar) growing at four different sites in the Sichuan province, Southwest China, were characterized by growth rate, rep-PCR, PCR-RFLP of 16S rDNA, partial sequencing of ribosomal genes, and fatty acid-methyl e...
Article
This study examined the feasibility of recurrent selection for enhanced N2 fixation in common bean (Phaseolus vulgaris), and sought to generate breeding lines with high N2-fixing ability. Following their selection as superior in N2 fixing ability, the landrace Puebla 152, and the CIAT breeding lines BAT 271 and RIZ 21 were intercrossed, and 17 F2.3...
Chapter
The wide-scale application of wild-type or genetically-modified nitrogen-fixing bacteria to agricultural production fields presents some challenging, and often insurmountable, problems. Faced with a new and potentially hostile environment, applied inoculants often fail to increase plant productivity. There are a large number of diverse environmenta...
Chapter
The purple prairie clover (Dalea purpurea) is increasingly used in revegetation projects in Minnesota, but little is known of inoculation requirements, nor of the rhizobia themselves. In this paper we report characterization of Dalea rhizobia from native prairies and revegetation sites in Minnesota. Analysis of 57 isolates from Dalea, Coronilla, an...
Article
Full-text available
The interactive effects of Sinorhizobium inoculants and soil N status should affect the N contribution of annual medics (Medicago spp.) in cropping systems. We determined the effect of N and commercial medic inoculum on nodulation, dry matter, and N yield of annual medics and also determined Sinorhizobium strain occupancy in annual medic nodules. F...
Article
Full-text available
Calcium improves the ability of many rhizobia to survive and persist in acid soils, but the mechanism responsible for this phenomenon has not been studied in detail. Here, we present data examining the combined effects of pH and calcium on the cell envelope of Rhizobium strains that differ in pH tolerance. The effect of pH and calcium on solute upt...
Article
The family Rhizobiaceae is comprised of six genera of plant-associating bacteria, Rhizobium, Bradyrhizobium, Sinorhizobium, Azorhizobium, Agrobacterium, and Phyllobacterium. A seventh genus, Mesorhizobium, has been proposed recently (Jarvis et al., 1997; Young and Haukka, 1996). In Bergey’s manual (Kersters and DeLey, 1984), the first four genera a...
Article
We have previously reported a soybean plant introduction, PI 437153A, which was ineffectively nodulated (definition of G. Vest, D. F. Weber, and C. Sloger, Agronomy 16:353-390, 1973) by Bradyrhizobium japonicum strain UMR (University of Minnesota Rhizobium) 161. In this study, we further characterize this nodulation system by (i) examining the nodu...
Article
The contribution of early nodulation and dinitrogen (N2) fixation to overall soybean [Glycine max (L.) Merr.] plant performance in the cooler northern states of the U.S. Midwest needs further investigation. In a previous growth chamber study, we identified traits associated with improved early nodulation and N2 fixation in this crop. This study exa...
Article
We have previously identified differences among soybean [Glycine max (L.) Merr.] lines in early nodulation and N2 fixation, and related early nodule development and overall plant performance under N-limited field conditions. The objectives of the present study were: 1) to estimate heritabilities for nodule fresh weight (NFW), shoot dry weight (SDW)...
Article
Soybeans [Glycine max (L.) Merr.] grown on soils low in N can exhibit N deficiency during early plant development. Improved early N 2 fixation may alleviate this problem. Our objectives were to (i) examine genetic variation in early nodulation and N 2 fixation of soybean, and (ii) identify traits useful in breeding for early nodulation and N 2 fixa...
Article
Common bean (Phaseolus vulgaris L.) is a traditional crop in much of Latin America, where it is often planted into soils containing numerous, sometimes ineffective, indigenous rhizobia. The presence of these indigenous organisms can limit response to inoculation. Because of this, we have sought bean cultivars that will nodulate preferentially with...
Chapter
Individual protein consumption of the 5.3 billion people on Earth averages about 70 g of protein/day, or 23 million tons of nitrogen (N)/annum (Waggoner, 1994). To maintain this level of intake as the Earth’s population doubles over the next 40 years, will necessitate a doubling or tripling of crop production, despite a significant deterioration of...
Article
Competition from existing soil rhizobia has limited the benefits from nitrogen fixation for soybean grown in the American Midwest. A strategy being considered to overcome this problem is the use of varieties that are restricted in nodulation with soil strains, but nodulate normally with inoculant bradyrhizobia. In this study we examine the efficien...
Article
Full-text available
Acid pH limits the persistence of Rhizohirrn~ strains in soil, and the nodulation and nitrogen fixation of legumes. To identify acid-tolerant strains, we tested the ability of 45 Rhizohirrm, Azorkizohi~/nla.n d BI-aclyr.Aiznhiunzs trains to produce isolated colonies on agar medium of pH 4.00 to pH 7.00. Only Rhirohi~/mtr .opici UMRI 899 (=CIAT899)...
Book
During the past three decades there has been a large amount of research on biological nitrogen fixation, in part stimulated by increasing world prices of nitrogen-containing fertilizers and environmental concerns. In the last several years, research on plant--microbe interactions, and symbiotic and asymbiotic nitrogen fixation has become truly inte...
Article
Variation in seed yield and protein levels of sweet white lupin (Lupinus albus L. cv. Ultra) in the North Central USA has limited production of the crop in this region. Poor N nutrition from biological or exogenous sources may be one of the causes of this variation. Studies were conducted under irrigation in 1988, 1989, and 1990 at Becker, MN, on a...
Article
Timing of N uptake and N 2 fixation may be important determinants of yield and seed N concentration in spring sown lupine (Lupinus albus L.). This study was initiated to determine N 2 fixation, N and dry matter (DM) accumulation and distribution patterns, and nodulation as influenced by Bradyrhizobium sp. (lupinus) inoculation and N fertilizer (.)
Article
Soil Bradyrhizobium populations limit nodule occupancy of soybean by symbiotically-superior inoculant strains throughout much of the American midwest. In this study, the competitiveness of indigenous populations of B. japonicum serocluster 123 from Waukegan and Webster soils was evaluated in growth pouches using a root-tip marking procedure. The na...
Article
Soil acidity constraints grain legume production in tropical soils, both limiting Rhizobium survival and reducing nodulation. Strains of rhizobia with greater tolerance to hydrogen-ion concentration have been identified, but the basis for strain differences in pH tolerance has yet to be determined. In this study, strains of Rhizobium leguminosarum...
Article
In the American Midwest, superior N(2)-fixing inoculant strains of Bradyrhizobium japonicum consistently fail to produce the majority of nodules on the roots of field-grown soybean. Poor nodulation by inoculant strains is partly due to their inability to stay abreast of the expanding soybean root system in numbers sufficient for them to be competit...
Article
This study examines the speed of nodulation of 20 strains of Rhizobium leguminosarum bv phaseoli, and relates this trait to the competitive performance of these strains with Phaseolus vulgaris L. At 25/20C day/night temperature, and with 107 cells applied per growth pouch, there was a strong positive correlation between the speed of nodulation and...
Article
Competition from native soil rhizobia is likely to be an important factor limiting Phaseolus vulgaris L. inoculant response in Latin America. We used UMR 1116, a nod + fix– natural mutant of Rhizobium leguminosarum bv phaseoli strain CC511, as a reference strain to study competition for nodulation sites in this species. When P. vulgaris cv Carioca...
Article
In the American Midwest, superior N2-fixing inoculant strains of Bradyrhizobium japonicum consistently fail to produce the majority of nodules on the roots of field-grown soybean. Poor nodulation by inoculant strains is partly due to their inability to stay abreast of the expanding soybean root system in numbers sufficient for them to be competitiv...
Article
Carbon metabolism in Bradyrhizobium japonicum bacteroids is reviewed. Additionally, the bacteroid tricarboxylic acid (TCA) cycle and its regulation under oxygen-limited conditions is considered, with emphasis on possible sites of TCA cycle rate-limiting reactions. Furthermore, we consider other adaptive pathways that may be employed by these organi...
Article
Full-text available
In the American Midwest, superior inoculant rhizobia applied to soybeans usually occupy only 5 to 20% of nodules, and response to inoculation is the exception rather than the rule. Attempts to overcome this problem have met with limited success. We evaluated the ability of Bradyrhizobium japonicum, supplied as a seed coat inoculant, to stay abreast...
Article
Two experiments were carried out to evaluate the effect of acidity on bean-Rhizobium competition for nodule sites. SevenPhaseolus vulgaris host cultivars differing in acid-pH tolerance were grown in sand culture, and irrigated using a sub-irrigation system and nutrient solutions of pH 4.5, 5.0, 5.5, and 6.0. A mixed inoculant of two antibiotically...
Article
Acid-soil pH is a major factor limiting nodulation and N2 fixation in beans. The experiments reported here sought strains of Rhizobium and cultivars of Phaseolus vulgaris L. tolerant of acid pH, and to study the interaction of strains and cultivars differing in pH tolerance. Seventy-eight of 217 isolates of R. leguminosarum bv. phaseoli grew on mod...
Article
Homogenates from soybean nodules, formed by 12 strains of Bradyrhizobium japonicum, were plated into yeast-extract mannitol agar containing 3 or 37 g mannitol 1-1. Viable counts ranged from 8.298 to 11.265 log10 cells-gram nodule-1. When monitored over the life cycle of the symbiosis, the viability of strains USDA 110 and USDA 123 increased with da...

Citations

... As regiões sul e centro-oeste do Brasil são as que possuem maior concentração de área plantada de soja totalizando 78,2% de toda a área destinada ao cultivo (Hungria et al., 2005;Hirakuri et al., 2018). ...
... Inoculant rhizobia are available for some of these legumes ), but in many cases the species and even the genus to which the rhizobia belong are still unknown (Graham 2005). Adding complexity to this matter, cross inoculation can occur among some of these genera, including Amorpha, Astragalus, and Dalea, as well as Phaseolus with unknown implications (Bernal et al. 2004;Cloutier et al. 1996;Graham 2005;Graham et al. 1999;Tlusty et al. 2005). ...
... 17 Nitrogen fixation helps in the improvement of soil fertility and crop production. 18 Azotobacter can convert the nitrogen present in atmosphere into ammonia which can be taken up by plants and gets utilized in plant body. 19 At the time when they are fixing the nitrogen the plant become resistant to oxygen because of production of nitrogenase. ...
... Hence, competition of soil rhizobial populations is an important biotic factor that precludes nodulation by inoculated strains. Although several attempts were made to improve the competitiveness of inoculants, including through bacterial genetics (Toro, 1996;Da Costa Coutinho et al., 1999;Sadowski and Graham, 1999;Amarger, 2002, Okazaki et al., 2003, optimization of plant variety-bacterial strain compatibility (Herridge and Rose, 2000;Siriluck and Sadowsky, 2008), and enhancement of inoculant formulations (Smith, 1992, López-García et al., 2001, López-García, 2004, little success was obtained under fi eld conditions. Th is was particularly the case when the size of the competitor populations was higher than 10 3 infective propagules g -1 of soil, which is the situation in the center of Argentinean soybean cropping areas. ...
... The coefficient of correlation between NN and -PAT% (r = 0.27; p < 0.01) was similar to that reported by Houngnandan et al. (2008) between nodule number and δ 15 N (r = 0.325*) in a diverse group of soybean cultivars. Additionally, Pazdernik, Graham, and Orf (1997) studied a soybean population to investigate early nodulation traits and found that %Ndfa at R5 was significantly correlated with nodule fresh weight (r = 0.33; p < 0.01). ...
... The hypothesis of this work was that indigenous rhizobium isolated from roots and rhizosphere soil of M. axillare can achieve the most efficient symbiosis and serve as the basis for the production of an inoculant to the legume. As pointed out by Sadowsky and Graham [16], a way of multiplication of rhizobium strains is through their multiplication in nodules that further decompose and liberate them into the soil. If nodulated plants in a low-fertility soil are well developed, the chances that the nodules host efficient strains are favorable. ...
... Soybean has a high demand for N to achieve greater grain yield and seed protein content (Fabre and Planchon, 2000). However, N fertilization is not recommended due to the high SNF efficiency in Brazil (Hungria et al., 2006a;2006b). The exception is at sowing, when a maximum rate of 20 kg N ha −1 can be applied to supply N without affecting SNF establishment (Embrapa, 2013). ...
... The use of more effective, competitive, and adapted strains to inoculate common bean, such as R. tropici and R. freirei strains recommended in Brazil, has already shown that it is possible to attenuate the competitiveness of resident rhizobia and achieve improvements in nodulation, nitrogen fixation, and yield for this crop (Hungria et al., 2003). Strains with high nodule-forming efficiency (i.e., initiating and sustaining an infection rapidly and efficiently) are often found to have a competitive advantage over those that are slower and less efficient (McDermoti and Graham, 1990;Vlassak et al., 1997). Therefore, the higher nodulation ability of AzR18 and AzR19 may represent a competitive advantage for nodule occupation of common bean in the presence of indigenous soil rhizobia and represent and additional advantage as compared to CIAT899. ...
... también mostraron una respuesta variable entre las especies con aumentos signifi cativos en la MS aérea de las plantas. En particular, Beyhaut et al. (2006b) obtuvieron incrementos de 100% de biomasa vegetal de D. illinoensis con respecto a plantas sin inocular. ...
... Although our approach to estimating d 15 N a was prone to error, we suggest that this error was likely no greater than what would be engendered by more traditional methods (Ledgard, 1989;Unkovich et al., 1994;Okito et al., 2004). In particular, our approach avoided biases that arise from deriving B values with one set of rhizobial strains that differ from those that inhabit root nodules in the field (Byun et al., 2004). Summed across harvests within years, annual Ndfs in N 2 -fixing alfalfa (137 kg N ha 21 ) was greater than Ndfs in nonfixing alfalfa alone (87 kg N ha 21 ), but equal to Ndfs of nonfixing alfalfa plus weeds (144 kg Nha 21 ). ...