Nisachon Khunnawutmanotham’s research while affiliated with Chulabhorn Research Institute and other places

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Publications (32)


Front Cover: Cholinesterase Inhibitory Activity and Molecular Docking Studies of Isocryptolepine‐Triazole Adducts (ChemMedChem 24/2024)
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December 2024

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Nisachon Khunnawutmanotham

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Cryptolepine and its analogs.
The rationale for the designs of our cholinesterase inhibitors with isocryptolepine‐triazole scaffold, based on previously reported inhibitors with triazole and/or quinoline moieties.
Synthetic isocryptolepine‐triazole analogs for the investigation of their anti‐cholinesterases activities. Compounds with high AChE inhibition activity were name‐highlighted in red.
The structure of synthetic isocryptolepine‐triazole scaffold.
The binding poses and binding interactions of DPZ (a and b), 6 b (c and d), 6 l (e and f), 6 m (g and h), and 6 n (i and j). Note: light pink=π‐alkyl interaction, pink=π‐π interaction, purple=π‐σ interaction, light blue=halogen (fluorine) interaction, light green=π‐donor/carbon hydrogen bond interaction, and green=conventional hydrogen bond interaction.

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Cholinesterase Inhibitory Activity and Molecular Docking Studies of Isocryptolepine‐Triazole Adducts

September 2024

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76 Reads

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1 Citation

Due to the rising prevalence of Alzheimer's disease (AD), there is a pressing need for more effective drugs to treat or manage AD's symptoms. Studies have shown that cholinesterase inhibition can improve cognitive and behavioral symptoms associated with AD, by addressing the cholinergic deficit. Based on the recent development of cholinesterase inhibitors with indoloquinoline and triazole moiety, we rationalized that compounds with an isocryptolepine‐triazole scaffold may also have the same biological targets. In this study, eighteen previously synthesized isocryptolepine‐triazole compounds were assessed for their ability to inhibit acetylcholinesterase (AChE) and butyrylcholinesterase (BChE). The majority of these compounds demonstrated potent selective AChE inhibition. Furthermore, our molecular docking and molecular dynamic simulation studies reveal that the isocryptolepine and triazole moieties are important for the binding of the compounds with the periphery of the AChE's binding pocket. While reductions in molecular weights and lipophilicities may be necessary to improve their pharmacokinetic properties, this work provides valuable insights for designing future AChE inhibitors, based on the novel isocryptolepine‐triazole scaffold.



Column selection for separation of diastereomeric alkaloids and an analogue in kratom (Mitragyna speciosa), Pure and Applied Chemistry International Conference 2022 (PACCON 2022), 2022, Bangkok, Thailand.

June 2022

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238 Reads

It's not straightforward to separate indole alkaloids from kratom (Mitragyna speciosa). Two of the most common issues are broadening peak form and the inability to yield baseline separation of closely related structures. Mitragynine (MG), speciogynine (SG), speciociliatine (SC), and paynantheine (PT) are the four major alkaloids discovered in kratom. MG, SC, and SG are diastereomeric isomers, and PT is a dehydro counterpart of SG. Column selectivity, which is closely related to column selection, has a significant impact on analysis completion. The AQS C18, UPS C18, Integral C18, Luna Omega PS C18 and pHendure C18 columns were evaluated in a mobile phase of acetonitrile-water containing ammonium acetate. AQS C18, embedded polar groups (EPGs) C18, produced the best results of all the columns tested. The impact of ammonium acetate buffer concentration was also investigated. The best conditions were 60% acetonitrile in water with a buffer of 10 mM ammonium acetate. In this condition, a good peak form with baseline separation was obtained in isocratic mode with a total analysis time of less than 11 minutes. Keywords: Mitragyna speciosa, indole alkaloids, column selection, embedded polar groups (EPGs) C18, ammonium acetate


Greening Reversed-Phase Liquid Chromatography Methods for separation of indole alkaloids in Mitragyna speciosa leaves

June 2022

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122 Reads

Mitragyna speciosa, also known as "kratom" in Thai, is a Southeast Asian tree whose leaves are used to induce stimulant and opioid-like analgesic effects. With the goal of standardization and quality control of raw kratom, an HPLC-UV method was devised for quantification of four important indole alkaloids: mitragynine, paynantheine, speciogynine, and speciociliatine. Paynantheine is a dehydro analog of speciogynine, whereas mitragynine, speciogynine, and speciociliatine are diastereomers. An ethanol-water mobile phase system containing ammonium acetate was used in conjunction with a UPS-C18 column in the "greening chromatographic approach." Mobile phase compositions, column temperature, and ammonium acetate buffer concentration were all studied to provide baseline separation of all four indole alkaloids. The best chromatographic conditions were 15 mM ammonium acetate in 55% (v/v) ethanol in water at 40°C in isocratic mode. The total analysis time in this case was less than 8.5 minutes. The optimized method was utilized to separate the indole-type alkaloids in raw fresh kratom leaves. The Eco-scale was used to evaluate the method's environmental friendliness.


Synthesis of Isocryptolepine‐Triazole Adducts and Evaluation of Their Cytotoxic Activity

October 2021

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110 Reads

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8 Citations

Eighteen hybrid compounds between 8‐bromo‐2‐fluoro‐isocryptolepine (4) and 1,2,3‐triazole were synthesized via azide rearrangement‐annulation reaction. Compound 4 underwent regioselective N‐propargylation and click reaction to form 8‐bromo‐2‐fluoro‐isocryptolepine‐triazole hybrids 11 which were evaluated for cytotoxic activity. Compound 11 c containing 1‐anisyltriazole was the most effective in inhibiting HepG2, HuCCA‐1 and A549 cell lines (IC50 values of 1.65–3.07 μM) while compounds 11 a (1‐phenyltriazole), 11 j (1‐para‐CF3‐benzyltriazole) and 11 l (1‐meta‐Cl‐benzyltriazole) were potent inhibitors of HuCCA‐1, HepG2 and A549 cell lines, respectively. Moreover, 11 l showed the lowest cytotoxicity to normal human kidney cell line. Compounds 11 c and 11 l provided improvement of cytotoxic activity over 4. Compounds 4, 11 c and 11 l were selected to investigate their mechanisms of action. The results showed that 4 could induce G2/M cell cycle arrest and was involved in the upregulation of p53 and p21 proteins. However, the mechanisms of growth inhibition by 11 c and 11 l were associated with G0/G1 cell cycle arrest and mediated by induction of oxidative stress.


Main indole alkaloids found in M. speciosa.
TLC showing bands of a water extract (WE) of M. speciosa leaves compared with a methanol extract (ME) under UV light; (a) 254 nm (b) 366 nm.
HPLC chromatograms of a standard mixture of three main alkaloids with 0.1 % trifluoroacetic acid in 10 % acetonitrile/water and acetonitrile (70 : 30, V/V and 80 : 20, V/V, respectively) for three types of columns: (a) Kinetex XB‐C18, (b) VertiSep integral C18, and (c) VertiSep UPS‐PFPP.
HPLC chromatograms of a standard mixture of three main alkaloids (a) and a crude water extract (b) with PFPP column using 10 mM ammonium acetate in water and methanol (20 : 80, V/V) as mobile phase.
Analysis of MG, PT, and SG in methanol extracts from dried and fresh leaves of M. speciosa. Data are expressed as mean (n=3).
Facile Extraction of Three Main Indole Alkaloids from Mitragyna speciosa by Using Hot Water

October 2021

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270 Reads

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7 Citations

The study presented a facile and efficient extraction method of main indole alkaloids from the fresh leaves of Mitragyna speciosa. A water extract containing three main indole alkaloids, namely mitragynine (MG), paynantheine (PT), and speciogynine (SG), was obtained by boiling the fresh leaves in water followed by partitioning with dichloromethane. The extraction yield of 1.0 % (w/w) was obtained under the optimized conditions. The contents of MG, PT, and SG obtained from water extraction were determined by high‐performance liquid chromatography analysis and were found to be comparable to those obtained from methanol extraction. However, because the extraction yield obtained from using methanol was tenfold higher than that from using hot water, this indicated the presence of some undesirable materials in the methanol but not in water extract. This method provided an alkaloid‐rich extract of M. speciosa. The procedure was easy to perform, inexpensive, environmentally benign, and could be easily scaled up from laboratory to industrial scale.


Synthesis, cytotoxicity evaluation, and molecular modeling studies of 2, N 10 -substituted acridones as DNA-intercalating agents

July 2020

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93 Reads

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3 Citations

Journal of Chemical Research

Acridine-based compounds possess anticancer activities by intercalating to DNA. Although they have chemotherapeutic potential, acridine-based compounds are not used to treat cancer. In this study, 2, N ¹⁰ -acridone derivatives are designed and synthesized based on acridone, a ketone derivative of acridine. Herein, acridone is functionalized with alkyl side chains containing terminal nitrogen-based moieties at the N ¹⁰ -position and substituted at the C2-position. The products are evaluated for in vitro cytotoxicity against four cancer cell lines: Molt-3, HepG2, A549, and HuCCA-1. The derivative bearing two butyl piperidine side chains at the C2- and N ¹⁰ -positions is the most active, with IC 50 values ranging from 2.96 to 9.46 µM. Molecular modeling studies supported the binding of the derivatives to DNA by intercalation, thereby confirming the observed cytotoxic effects.



Figure 1: Design of the target compounds.
Figure 2: Docked conformations of donepezil (ball-and-stick model; pink), compounds 9a, 9b, 9e, 9h, and 9i (stick model; colored atom-type), compound 4a (ball-and-stick model; green), and compound 10a (ball-and-stick model; blue).
Figure 3: Binding interactions in the rhAChE binding pocket with (a) 4a, (b) 9a, (c) 9b, (d) 9e, (e) 9h, (f) 9i, and (g) 10a. Distances are shown in angstrom (Å).
Acetylcholinesterase inhibitory activity of 3-aminocoumarin derivatives.
Synthesis of 3-aminocoumarin- N -benzylpyridinium conjugates with nanomolar inhibitory activity against acetylcholinesterase

October 2018

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168 Reads

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9 Citations

Beilstein Journal of Organic Chemistry

A series of 3-amino-6,7-dimethoxycoumarins conjugated with the N-benzylpyridinium moiety through an amide-bond linkage was synthesized and evaluated for their acetylcholinesterase inhibitory activity. A number of the benzylpyridinium derivatives exhibited potent activities with inhibitory concentration (IC50) values in the nanomolar concentration range. Among them, the 2,3-difluorobenzylpyridinium-containing compound was the most potent inhibitor with an IC50 value of 1.53 ± 0.01 nM. Docking studies revealed that the synthesized compounds inhibit the target enzyme by a dual binding site mechanism whereby the coumarin portion binds with the peripheral anionic site while the N-benzylpyridinium residue binds with the catalytic anionic site of the enzyme.


Citations (17)


... Používají se různé čaje, nápoje, sušené přípravky, ale v tradiční medicíně mohou být listy i žvýkány (26). Pro přípravu nápojů a čajů se využívá fakt, že v kratomu obsažené alkaloidy lze extrahovat horkou vodou (27). V tradiční medicíně v zemích s přirozeným výskytem kratomu se používá jako anestetikum, léčbě kašle, průjmu a pro zrychlení hojení ran. ...

Reference:

KRATOM AND ITS EFFECTS ON AN ORGANISM
Facile Extraction of Three Main Indole Alkaloids from Mitragyna speciosa by Using Hot Water

... Recognizing the unique therapeutic potential of each structural component, we propose a novel drug design approach that capitalizes on the synergistic effects arising from the combination of indoloquinoline and triazole moieties. With this rationale, we hypothesized that our previously reported anti-cancer isocryptolepine-triazole hybrids (6), containing both indoloquinoline and triazole scaffolds, [16] may also serve as potential novel AD therapeutic agents through the inhibition of cholinesterases. Thus, 18 isocryptolepine-triazole analogs (Figure 3) previously synthesized using the reported protocol [16] were utilized for the investigation of their anti-cholinesterase activities. ...

Synthesis of Isocryptolepine‐Triazole Adducts and Evaluation of Their Cytotoxic Activity

... [8,9] These compounds have been studied and structurally amended to increase their potency and solubility for clinical applications as anticancer drug candidates. [10] On the other hand, acridine compounds is known ever since the 19 th century when they were isolated from crude anthracene, one of them was named acridine (which means sharp and painful) due to its itching and inflammatory properties. [11] The correct structure of acridine was established by Carl Riedel, who also established quinoline, and pyridine structure relationships. ...

Synthesis, cytotoxicity evaluation, and molecular modeling studies of 2, N 10 -substituted acridones as DNA-intercalating agents

Journal of Chemical Research

... Zondagh et al. synthesized a new series of heterocyclic edaravone derivatives 47-58 (Fig. 9) by combining benzyl pyridinium moiety to the phenyl ring of edaravone to study its efficacy as an MTD drug to inhibit cholinesterase activity [41]. They chose the benzyl pyridinium group, owing to its potential as an antioxidant and acetylcholinesterase (AChE) inhibitor [42][43][44][45]. The results of the molecular modelling indicate that these compounds have the potential to establish substantial interaction within the peripheral anionic site (PAS) and the catalytic active site (CAS) of the AChE active site, resulting in strong inhibitory activity [IC 50 (Inhibitory concentration 50%): 1.2-4.6 µM]. ...

Synthesis of 3-aminocoumarin- N -benzylpyridinium conjugates with nanomolar inhibitory activity against acetylcholinesterase

Beilstein Journal of Organic Chemistry

... In our previous studies, a set of Lycopodium alkaloids were isolated from Thai club mosses (Nilsu et al., 2016(Nilsu et al., , 2018Pongpamorn et al., 2016). This paper reports the isolation, structure elucidation, and the acetylcholinesterase inhibitory activity of phlegcarines A-C (1-3) together with nine known Lycopodium alkaloids 4-12 from the aerial parts of an ornamental species of clubmoss, P. carinatus (see Fig. 1). ...

Three Lycopodium alkaloids from Thai club mosses
  • Citing Article
  • September 2018

Phytochemistry

... followed by 1,8-cineole (15.2%). Chimnoi et al. [16] identified 37 compounds, with six main ones: eugenol (55.6%); cis-ocimene (13.9%); γ-muurolene (11.6%); α-farnesene (5.6%); α-trans-bergamotene (4.1%); and β-caryophyllene (2.7%). Sartoratto et al. [50] characterized six compounds, with eugenol (93.9%) and germacrene-D (4.2%) being the most prevalent. ...

Characterization of essential oil from Ocimum gratissimum leaves: Antibacterial and mode of action against selected gastroenteritis pathogens
  • Citing Article
  • March 2018

Microbial Pathogenesis

... Litebamine 358 was provided in 46% overall yield from 356 in four steps (Scheme 71). 324 The batzelladines, a class of polycyclic marine alkaloids bearing a guanidine moiety, were isolated from various Batzella species. In 1995, Batzelladines A-E were extracted from a bright red Carribean sponge of the genus Batzella. ...

Efficient one‐pot synthesis of tetrahydronaphtho[2,1‐f]isoquinoline under domino Pictet‐Spengler/Friedel‐Crafts type reactions
  • Citing Article
  • October 2017

... scopoletin [326,[653][654][655][656][657][658][659][660][661][662][663][664] theobromine [665][666][667][668][669][670][671][672][673] theophylline vanillic acid [696][697][698][699][700][701][702] vanillin xanthine Theoretical and computational chemistry plays an important role in the design of new compounds. There are numerous tools available that allow evaluating important properties of derivatives, particularly when they are meant to be used as medical drugs. ...

Synthesis and anti-acetylcholinesterase activity of scopoletin derivatives
  • Citing Article
  • December 2015

Bioorganic Chemistry

... With time some new alkaloids are explored and reported from different species of Huperzia. Two new alkaloids 8,15-dihydrohuperzine A and lycocarinatine A along with nine previously reported known alkaloids were reported from Huperzia carinata by Thorroad et al. 2014. Lycoposerramine U N-oxide together with four known alkaloids including huperzine A, 12-epilycodine N-oxide, phlegmariurine B and lycoflexine N-oxide are reported from H. squarrosa by Thorroad et al. 2014. ...

Three New Lycopodium Alkaloids from Huperzia carinata and Huperzia squarrosa
  • Citing Article
  • August 2014

Tetrahedron