Mohammad Navvabi’s research while affiliated with Shahid Beheshti University and other places

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Publications (1)


The schematic plan of the proposed MLP method
Percentage of callus induction in MS medium in carrot
Speed of callus induction in MS medium in carrot
Percentage of callus induction in 4 MS medium in carrot
Speed of callus induction in 4 MS medium in carrot

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Modeling and optimizing in vitro percentage and speed callus induction of carrot via Multilayer Perceptron-Single point discrete GA and radial basis function
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November 2022

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7 Citations

BMC Biotechnology

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Mohammad Navvabi

Background Callus induction is the first step in optimizing plant regeneration. Fit embryogenesis and shooting rely on callus induction. In addition, using artificial intelligence models in combination with an algorithm can be helpful in the optimization of in vitro culture. The present study aimed to evaluate the percentage and speed of callus induction optimization in carrot with a Multilayer Perceptron-Single point discrete genetic algorithm (GA). Materials and methods In this study, the outputs included callus induction percentage and speed, while inputs were different types and concentrations of plant growth regulator (0. 5, 0.2 mg/l 2,4-D, 0.3, 0.2, 0.5 mg/l BAP, 1, 0.2 mg/l Kin, and 2 mg/l NAA), different explants (shoot, root, leaf, and nodal), a different concentration compound of MS medium (1 × MS, 4× MS, and 8× MS) and time of sampling. The data were obtained in the laboratory, and multilayer perceptron (MLP) and radial basis function (RBF), two well-known ANNs, were employed to model. Then, GA was used for optimization, and sensitivity analysis was performed to indicate the inputs’ importance. Results The results showed that MLP had better prediction efficiency than RBF. Based on the results, R ² in training and testing data was 95 and 95% for the percentage of callus induction, while it was 94 and 95% for the speed of callus induction, respectively. In addition, a concentration compound of MS had high sensitivity, while times of sampling had low sensitivity. Based on the MLP-Single point discrete GA, the best results were obtained for shoot explants, 1× MS media, and 0.5 mg/l 2, 4-D + 0.5 mg/l BAP. Further, a non-significant difference was observed between the test result and predicted MLP. Conclusions Generally, MLP-Single point discrete GA is considered a potent tool for predicting treatment and fit model results used in plant tissue culture and selecting the best medium for callus induction.

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Citations (1)


... As a result, ML algorithms offer an alternative effective and dependable computational tool for prediction and analysis and various intricate variables [34,35]. Artificial neural network (ANN) algorithms have been extensively used for prediction and modelling in plant tissue culture systems, for instance, hairy root culture [36], in vitro culture medium [28,37], callus induction [38], in vitro seed germination [29], somatic embryogenesis [25], shoot proliferation [30,31], and surface sterilization [39]. One such ANN model extensively used in plant tissue culture is the multilayer perceptron (MLP), which is a subset of nonlinear regression models that have a variety of applications, including complex system classification, prediction, and clustering [25,30,31,38]. ...

Reference:

Enhanced and predictive modelling of direct shoot regeneration of Evolvulus alsinoides (L.) using ANN machine learning model and Genetic stability studies
Modeling and optimizing in vitro percentage and speed callus induction of carrot via Multilayer Perceptron-Single point discrete GA and radial basis function

BMC Biotechnology