Mohammad Kawsar Ahmed’s research while affiliated with Jagannath University and other places

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Publications (2)


FIGURE 3 (Top) F spectrum (red solid line) of ACP43 (left panel)/ ACP47 (right panel) and the corresponding fit (red dashed line) obtained with a linear combination of a supposed emission lineshape of free Chls, an excitonic-like band (produced by 3/5-nm red shifting of the F lineshape of native CP43/CP47), and a broad inhomogeneously broadened lineshape synthesized by a linear combination of 3/3 symmetric Gaussian functions shown by three broken lines within its envelope. (Bottom) SF spectrum and the corresponding fit (blue solid line) obtained with the weighted superposition of the zeroth-, first-, and second-order derivatives of the deconvoluted bands. To see this figure in color, go online.
FIGURE 4 Views of pigments from the crystal structure of PSII of Chlamydomonas reihardtii (73). Above is the top view from cytoplasm toward the membrane of PSII, showing CP43 and CP47 Chl inside the circles; (A) CP43, top view from cytoplasm; (B) CP43, side view oriented with the lumen below; the Chls are suggested to have low energy in CP43 are 634(43) in blue, 636(45) in dark blue (other 4 Chl of the exciton domain are in light blue) and 631(37) in pink, forming an exciton domain with 629(34) in light pink; (C) CP47, top view from cytoplasm; (D) CP47, side view, with lumen below; in CP47, suggested low energy level Chls 612(11) are in pink (613, 614, 616, and 617 are in light pink), 622(24) is in blue, 624(26) is in dark blue (619, 620, 621, 623 and 625 is in light blue), 615(14) and 618(17) are in green, 626(28) is in gray, and 627(29) is in black. Images were generated using Pymol software (structure from Protein Data Bank, PDB: 6KAD). To see this figure in color, go online.
Estimated molecular parameters within 10% of standard deviation Sample Band l max (nm) ZDC*(at 1 MVcm À1 ) Da[A ˚ 3 /f 2 ] Dm[D/f]
Absence of far red emission band in aggregated core antenna complexes
  • Article
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March 2021

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165 Reads

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2 Citations

Biophysical Journal

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Mohammad Kawsar Ahmed

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Reported herein is a Stark fluorescence (SF) spectroscopy study performed on photosystem II core antenna complexes CP43 and CP47 in their native and aggregated states. The systematic mathematical modeling of the SF spectra with the aid of conventional Liptay formalism revealed that induction of aggregation in both the core antenna complexes via detergent removal results in a single quenched species characterized by a remarkably broad and inhomogenously broadened emission lineshape peaking around 700 nm. The quenched species possesses a fairly large magnitude of charge-transfer (CT) character. From the analogy with the results from aggregated peripheral antenna complexes, the quenched species is thought to originate from the enhanced chlorophyll-chlorophyll (Chl-Chl) interaction due to aggregation. However, in contrast, aggregation of both core antenna complexes did not produce a far-red emission band at about 730 nm, which was identified in most of the aggregated peripheral antenna complexes [Wahadoszamen et al, PCCP 2012, Wahadoszamen et al BBA 2016]. The 730 nm emission band of the aggregated peripheral antenna complexes was attributed to the enhanced chlorophyll - carotenoid (lutein1) interaction in the terminal emitter locus. Therefore, it is very likely that the no occurrence of the far-red band in the aggregated core antenna complexes is directly related to the absence of lutein1 in their structures. The absence of the far-red band also suggests the possibility that aggregation induced conformational change of the core antenna complexes does not yield a chlorophyll-carotenoid (Chl-Car) interaction associated energy dissipation channel.

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Stark Absorption Study of Perylene Doped in a Poly (Methyl Methacrylate) Polymer Film at Different Concentrations

March 2020

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17 Reads

Journal of Bangladesh Academy of Sciences

In this article, electric field modulated absorption (Stark absorption, SA) study of perylene doped in a poly (methyl methacrylate) (PMMA) polymer film at the concentrations of 1.0 mol%, 2.0 mol% and 3.0 mol% is presented. The field effects on the absorption spectra were found to originate mostly from the Stark shift induced by a change in molecular polarizability between the ground and excited states. The analyses of SA spectra with the aid of Liptay formalism yielded essentially the same magnitude of the average change in molecular polarizability (Δα), evaluated for the S0 -> S1 transition, for all the concentrations. This finding implies that Δα of perylene molecule doped in a PMMA film does not depend on concentration. Moreover, the yielded positive Δα for both the preparations implies that SA spectroscopy is an essential technique to probe spectroscopically that perylene possesses larger molecular polarizability in the excited states than in the ground state. Journal of Bangladesh Academy of Sciences, Vol. 43, No. 2, 133-139, 2019

Citations (1)


... Under extreme environmental stress, the PSII pools present in the cyanobacterial membrane are suggested to be conformationally distorted, and hence largely energy dissipative (Huang et al. 2021;Johnson et al. 2022;Zabret et al. 2021). To shed some more light on this hypothesis, we carried out SF investigation on the iron-deficient cyanobacterial membrane, as SF spectroscopy was found to be very efficient in characterizing the functional state of various native and artificially aggregated photosynthetic pigment-protein complexes (Wahadoszamen et al. 2012(Wahadoszamen et al. , 2014a(Wahadoszamen et al. , b, 2020Ara et al. 2021). ...

Reference:

Unveiling large charge transfer character of PSII in an iron-deficient cyanobacterial membrane: A Stark fluorescence spectroscopy study
Absence of far red emission band in aggregated core antenna complexes

Biophysical Journal