Mohamed Ibrahim’s research while affiliated with The University of Texas at Dallas and other places

What is this page?


This page lists works of an author who doesn't have a ResearchGate profile or hasn't added the works to their profile yet. It is automatically generated from public (personal) data to further our legitimate goal of comprehensive and accurate scientific recordkeeping. If you are this author and want this page removed, please let us know.

Publications (3)


Expression of 1B capsid protein of Foot- and-mouth disease virus (FMDV) using baculovirus expression system and its validation in detecting SAT 2-specific antisera
  • Article
  • Full-text available

April 2020

·

154 Reads

·

7 Citations

·

·

·

[...]

·

Mohamed Ibrahim

Foot-and-mouth disease virus (FMDV) is one of the most devastating animal viruses that affect livestock worldwide. The 1B capsid of FMDV has been widely used to detect and confirm the infection. In the present study, the sequence coding for 1B subunit of FMDV capsid was expressed in insect cells using the baculovirus expression system under the polyhedrin (polh) promoter. The expression of 1B capsid protein was validated in the culture filtrate of insect cells using SDS-PAGE and western blotting. The culture filtrate containing recombinant 1B capsid (r1B) was used as a coated antigen in an indirect enzyme-linked immunosorbent assay (ELISA). The antigenicity and specificity of r1B against SAT 2 serotype-specific antibodies were assessed. Our results revealed that a protein concentration as low as 25 ng could detect SAT 2-specific antibodies in ELISA. The results highlight the application of insect cells developed r1B protein in the detection of FMDV. Further studies are required to determine the ability of r1B to detect other FMDV serotypes.

Download

Figure 1. Schematic diagram showing the arrangement of the FMDV genome as well as the VP2 amino acids sequence. The 5′ half of FMDV genome codes for the structural proteins VP4, VP2, VP3, and VP1, while the 3′ half codes for the non-structural proteins such as protease and RNA-dependent RNA polymerase (RdRP-1) coding genes. The deduced amino acid sequence of VP2 capsid protein is shown in grey color.
Figure 1. Percent identity to known sequences and number of OTUs found for the main meiofauna phyla retrieved from the Antarctic Peninsula sampled sites. The red full line represents the total number of OTUs found per phyla and the coloured bar represents the percentage identity BLAST match against the SILVA 111 nucleotide database. OTU percentages of BLAST match identity against the SILVA database are shown black (100% BLAST), dark to light grey (100-97% BLAST), light to dark blue (97-93%) and light to dark orange (93-90% BLAST). BECGB: Brachiopoda, Echinodermata, Cnidaria, Gastrotricha, Bryozoa.
Figure 2. Operational taxonomic unit saturation profiles at 99% sequence similarity level, for the. Antarctic samples collected. Hangar Cove (HC), Islands (I), Rothera Point (RP) and South Cove (SC), where 1-3 represent each sample replicate.
Figure 3. Secondary structure prediction and three-dimensional (3D) model of the VP2 capsid protein. The Jpred 4 database was used to predict the secondary structure (residues, 1-160) obtained from a local SAT 2 isolate (gb|AAZ83686). Red arrows highlight predicted β-strands. Cylinders and lines, shown in light purple color, highlight the α-helices and connecting loops, respectively. Amino acid residues in blue and underlined represent highly conserved sequence among different FMDV types. The 3D structure for the VP2-capsid protein, in ribbon format, is shown as an insert in the upper right corner of the figure.
Figure 3. Venn diagram depicting OTUs that are shared or unique to each of the four sampling sites found in the Antarctica meiofaunal shallow waters. Numbers in the diagram represent the number of total OTUs found in the different samples, South Cove (blue), Islands (Red), Rothera Point (yellow) and Hangar Cove (green).

+8

Construction, Expression and Evaluation of Recombinant VP2 Protein for serotype-independent Detection of FMDV Seropositive Animals in Egypt

July 2019

·

291 Reads

·

18 Citations

Foot-and-mouth disease virus (FMDV) is one of the most devastating viral pathogens of cloven-hoofed animals. The detection of antibodies (Ab) against FMDV structural proteins (SP) using virus neutralization test (VNT) and liquid-phase blocking ELISA (LPBE) is the standard procedure in use for monitoring seroconversion in animals post vaccination, the prevalence of infection-surveillance, proving clinical cases and seronegative status of FMDV-free/naïve-animals prior transportation. However, due to variations within SP of FMDV serotypes, each serotype-specific Ab should be detected separately which is laborious and time-consuming. Accordingly, it is crucial to develop a sensitive, rapid, and accurate test capable of detecting FMDV-specific Ab, regardless its serotype. This study describes the heterologous expression of VP2 protein in E. coli, and its evaluation as a capture antigen in a simple indirect ELISA for serotype-independent detection of anti-FMDV Ab. Sequence analysis revealed that the VP2-coding sequence is considerably conserved among FMDV serotypes. The recombinant VP2 (rVP2), a 22 kDa polypeptide, was purified to near homogeneity by affinity chromatography under native conditions. Immunoreactivity of the rVP2 was confirmed by using a panel of positive sera including sera from animals vaccinated with the local trivalent vaccine and guinea pig FMDV antiserum, which is routinely used as tracing/detecting Ab in LPBE testing. The results obtained from the VP2-based ELISA were comparable to those determined by VNT and LPBE standard diagnostic assays. Specificity and sensitivity of rVP2 in capturing anti-FMDV Ab were 98.3% and 100%, respectively. The developed VP2-ELISA is proved reliable and time-efficient assay for detection of FMDV seropositive animals, regardless the FMDV serotype that can be implemented in a combination with VNT and/or LPBE for rapid diagnosis of an ongoing FMDV infection.


Eight novel single chain antibody fragments recognising VP2 of foot-and-mouth disease virus serotypes A, O, and SAT 2

July 2019

·

91 Reads

·

21 Citations

Virology

Foot-and-mouth disease virus (FMDV) exhibits a high degree of antigenic diversity among its serotypes, requiring several anti-FMDV antibodies for its laboratory diagnosis, which complicated the used techniques. To conquer this cumbersome, we developed a new panel of different single-chain fragment variable (scFv) for serotype-independent detection of FMDV. The recombinant VP2 capsid protein, as a relatively conserved protein among FMDV serotypes, was expressed in E. Coli, and injected in mice. Spleen's RNA was extracted for isolating the coding sequences of IgG variable domains that were assembled into repertoires of scFv. Phage library displaying scFv was constructed with ∼1.9 × 108plaque forming units. Characterization of the library showed eight of unique scFvs, which were expressed as bacterial periplasmic proteins with apparent molecular weight of ∼27 kDa. Our data revealed the broad-spectrum binding affinity of the eight scFvs as both coating and tracing antibodies to FMDV serotypes A, O, and SAT 2.

Citations (3)


... This marked a significant milestone in understanding the role of viruses in animal diseases [2]. In the picornavirus family, FMDV is found in seven different strains, called A, C, O, Asia 1, SAT 1, SAT 2, and SAT 3 [3][4][5]. Each strain has unique immune characteristics. ...

Reference:

Clinical and Molecular Detection of Foot and Mouth Disease in Buffalo, Iraq
Expression of 1B capsid protein of Foot- and-mouth disease virus (FMDV) using baculovirus expression system and its validation in detecting SAT 2-specific antisera

... Foot-and-mouth disease virus (FMDV) is a transboundary animal disease that contributes to the emergence of diverse viral strains across different continents, posing significant challenges for control [30][31][32][33]. In Egypt, the virus is characterized by its high genetic variability, which complicates vaccine development and necessitates continuous surveillance [14]. ...

Construction, Expression and Evaluation of Recombinant VP2 Protein for serotype-independent Detection of FMDV Seropositive Animals in Egypt

... Meanwhile, the mature technology system based on phage display greatly shortens the production and screening time of recombinant antibodies, making scFv's a priority choice for biotechnology applications (10,11). At present, scFv's have been extensively used in the diagnosis and treatment of human and animal diseases, significantly promoting the advancements in medicine and agriculture (12)(13)(14). ...

Eight novel single chain antibody fragments recognising VP2 of foot-and-mouth disease virus serotypes A, O, and SAT 2
  • Citing Article
  • July 2019

Virology