May 2024
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Publications (198)
October 2023
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120 Reads
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16 Citations
Purpose Pancreatic ductal adenocarcinoma (PDAC) is generally divided in two subtypes, classical and basal. Recently, single-cell RNA sequencing has uncovered the coexistence of basal and classical cancer cells, as well as intermediary cancer cells, in individual tumors. The latter remains poorly understood; here, we sought to characterize them using a multimodal approach. Experimental Design We performed subtyping on a single-cell RNA sequencing dataset containing 18 human PDAC samples to identify multiple intermediary subtypes. We generated patient-derived PDAC organoids for functional studies. We compared single-cell profiling of matched blood and tumor samples to measure changes in the local and systemic immune microenvironment. We then leveraged longitudinally patient-matched blood to follow individual patients over the course of chemotherapy. Results We identified a cluster of KRT17-high intermediary cancer cells that uniquely express high levels of CXCL8 and other cytokines. The proportion of KRT17high/CXCL8⁺ cells in patient tumors correlated with intratumoral myeloid abundance, and, interestingly, high protumor peripheral blood granulocytes, implicating local and systemic roles. Patient-derived organoids maintained KRT17high/CXCL8⁺ cells and induced myeloid cell migration in a CXCL8-dependent manner. In our longitudinal studies, plasma CXCL8 decreased following chemotherapy in responsive patients, while CXCL8 persistence portended worse prognosis. Conclusions Through single-cell analysis of PDAC samples, we identified KRT17high/CXCL8⁺ cancer cells as an intermediary subtype, marked by a unique cytokine profile and capable of influencing myeloid cells in the tumor microenvironment and systemically. The abundance of this cell population should be considered for patient stratification in precision immunotherapy. See related commentary by Faraoni and McAllister, p. 2297
October 2022
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107 Reads
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18 Citations
Pancreatology
Introduction The mechanistic definition of chronic pancreatitis (CP) identifies acute pancreatitis (AP) as a precursor stage. We hypothesized that clinical AP frequently precedes the diagnosis of CP and is associated with patient- and disease-related factors. We describe the prevalence, temporal relationship and associations of AP in a well-defined North American cohort. Methods We evaluated data from 883 patients with CP prospectively enrolled in the North American Pancreatitis Studies across 27 US centers between 2000 and 2014. We determined how often patients had one or more episodes of AP and its occurrence in relationship to the diagnosis of CP. We used multivariable logistic regression to determine associations for prior AP. Results There were 624/883 (70.7%) patients with prior AP, among whom 161 (25.8%) had AP within 2 years, 115 (18.4%) within 3–5 years, and 348 (55.8%) >5 years prior to CP diagnosis. Among 504 AP patients with available information, 436 (86.5%) had >1 episode. On multivariable analyses, factors associated with increased odds of having prior AP were a younger age at CP diagnosis, white race, abdominal pain, pseudocyst(s) and pancreatic duct dilatation/stricture, while factors associated with a lower odds of having prior AP were exocrine insufficiency and pancreatic atrophy. When compared with patients with 1 episode, those with >1 AP episode were diagnosed with CP an average of 5 years earlier. Conclusions Nearly three-quarters of patients were diagnosed with AP prior to CP diagnosis. Identifying which AP patients are at-risk for future progression to CP may provide opportunities for primary and secondary prevention.
October 2022
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102 Reads
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6 Citations
Gastroenterology
May 2022
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24 Reads
Gastroenterology
November 2021
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51 Reads
Background: Pancreatic ductal adenocarcinoma (PDAC) is the 4th leading cause of cancer-related death in the US. A key hallmark of this disease is that, while tumors initially show susceptibility to standard chemotherapeutic agents, most patients eventually develop resistance, leading to poor survival. While the mechanisms of chemoresistance are unclear, murine studies have implicated the myeloid compartment of the tumor immune microenvironment. Correlative data in human tumors supports this notion, however, mechanistic studies are lacking, thus impairing translation to the clinic. The study of human pancreatic cancer has historically been challenging due to difficulty of fresh biospecimen acquisition, patient heterogeneity, and a diverse tumor microenvironment. Moreover, the vast majority of pancreatic cancer patients do not qualify for surgical resection, further limiting tissue availability. We have overcome these difficulties by developing a pipeline to analyze human tumor samples and matched blood using high-fidelity techniques including single-cell RNA sequencing (scRNAseq) and mass cytometry (CyTOF), together with establishment of organoids from the same tumors. Notably, in this pipeline we can use small amounts of tissue from endoscopic fine needle biopsies, thus allowing us to sample tumors from patients at any disease stage. Results: We performed CyTOF on longitudinally-matched peripheral blood mononuclear cells (PBMCs) from 30 patients and single-cell RNA sequencing on 6 patients in the treatment naïve and on-treatment (FOLFIRINOX) state. CyTOF revealed distinct alterations in the myeloid population, with a shift toward CXCR2hiPD-L1hi granulocytes with FOLFIRINOX treatment over time. Analysis of PBMCs from scRNAseq showed a distinct myeloid gene signature with FOLFIRINOX and in particular highlighted interleukin-8 (IL8), a chemokine involved in myeloid cell chemotaxis that is associated with poor prognosis in pancreatic cancer. Further mapping of IL8 in tumor tissue by scRNAseq showed that it is highly expressed in subpopulations of tumor epithelial cells and tumor-infiltrating granulocytes. IL8-high tumor-infiltrating granulocytes also highly expressed VEGF and CXCR4, suggesting immunosuppressive and angiogenic roles. IL8-high tumor epithelial cells were found to have a basal-like phenotype and also expressed a network of other chemokines including CXCL1, CXCL3, CXCL5, which are known to recruit immunosuppressive myeloid cells. Conclusions: Through longitudinal and multimodal mapping using PDAC patient blood and tumor biospecimens, we have identified IL8 as a potential mediator of epithelial-myeloid crosstalk in PDAC chemoresistance and tumor aggression. Validation studies using an all-human co-culture system of PDAC patient-derived organoids and myeloid cells are currently underway. Citation Format: Eileen S. Carpenter, Samantha Kemp, Padma Kadiyala, Nina Steele, Ahmed Elhossiny, Stephanie The, Valerie Gunchick, Rémy Nicolle, Michelle Anderson, Wenting Du, Carlos Espinoza, Richard Kwon, Erik-Jan Wamsteker, Anoop Prabhu, Allison Schulman, Vaibhav Sahai, Timothy Frankel, Filip Bednar, Marina Pasca di Magliano. Longitudinal profiling of pancreatic cancer patients identifies interleukin-8 as a mediator of myeloid-epithelial crosstalk [abstract]. In: Proceedings of the AACR Virtual Special Conference on Pancreatic Cancer; 2021 Sep 29-30. Philadelphia (PA): AACR; Cancer Res 2021;81(22 Suppl):Abstract nr PO-098.
October 2021
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48 Reads
The American Journal of Gastroenterology
April 2021
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10 Reads
Techniques and Innovations in Gastrointestinal Endoscopy
Healthcare organizations have recognized the value of physician leaders in change management and achieving institutional goals. Physicians leaders are now at all levels from individual clinics to the very top of large, multi-hospital organizations. Most endoscopy units have medical directors and organizations with multiple or large, complex units often have a “Chief of Endoscopy” (CoE) or the equivalent of this to oversee and lead the teams and decisions pertaining to these units. The following review will discuss the process to become a CoE, the importance of aligning personal values and skills with organizational purpose and will give suggestions for relevant metrics to success. It will also explore the challenges faced by women in endoscopy leadership positions and will give advice to women leaders and those who support her as mentors, colleagues, or partners. Although much of the discussion is intentionally focused on high-level endoscopy leadership, the information and messages have pertinence to any organizational leadership position and to leaders at any point in their leadership pathway.
February 2021
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132 Reads
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29 Citations
Background and study aims Women remain underrepresented in gastroenterology, especially advanced endoscopy. Women represent 30 % of general gastroenterology fellows; yet in 2019, only 12.8 % of fellows who matched into advanced endoscopy fellowship (AEF) programs were women. Methods We administered a web-based survey to the program directors (PDs) of AEF programs that participated in the 2018–2019 American Society for Gastroenterology (ASGE) match. We assessed PD and program characteristics, in addition to perceived barriers and facilitators (scale 1–5, 5 = most important) influencing women pursuing AEF training. Results We received 38 (59.3 %) responses from 64 PDs. 15.8 % (6/38) of AEF PDs and 13.2 % (5/38) of endoscopy chiefs were women. By program, women represented 14.8 % (mean) ± 17.0 % (SD) of AEF faculty and 12.0 % (mean) ± 11.1 % (SD) of AEF trainees over the past 10 years. 47.4 % (18/38) programs reported no female advanced endoscopy faculty and 31.6 % (12/38) of programs have never had a female fellow. Percentage of female fellows was strongly associated with percentage of female AEF faculty (ß = 0.43, P < 0.001). Inflexible hours and call (mean rank 3.3 ± 1.1), exposure to fluoroscopy (2.9 ± 1.1), lack of women endoscopists at national conferences/courses (2.9 ± 1.1) and lack of female mentorship (2.9 ± 1.0) were cited as the most important barriers to recruitment. Conclusion We utilized a survey of AEF PDs participating in the ASGE match to determine program characteristics and identify contributors to gender disparity. Women represent a minority of AEF PDs, endoscopy chiefs, advanced endoscopy faculty and AEF trainees. Our study highlights perceived barriers and facilitators to recruitment, and emphasizes the importance of having female representation in faculty, and leadership positions in endoscopy.
January 2021
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296 Reads
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227 Citations
Purpose Pancreatic ductal adenocarcinoma (PDAC) is a deadly disease characterized by an extensive fibroinflammatory stroma, which includes abundant cancer-associated fibroblast (CAF) populations. PDAC CAFs are heterogeneous, but the nature of this heterogeneity is incompletely understood. The Hedgehog pathway functions in PDAC in a paracrine manner, with ligands secreted by cancer cells signaling to stromal cells in the microenvironment. Previous reports investigating the role of Hedgehog signaling in PDAC have been contradictory, with Hedgehog signaling alternately proposed to promote or restrict tumor growth. In light of the newly discovered CAF heterogeneity, we investigated how Hedgehog pathway inhibition reprograms the PDAC microenvironment. Experimental Design We used a combination of pharmacologic inhibition, gain- and loss-of-function genetic experiments, cytometry by time-of-flight, and single-cell RNA sequencing to study the roles of Hedgehog signaling in PDAC. Results We found that Hedgehog signaling is uniquely activated in fibroblasts and differentially elevated in myofibroblastic CAFs (myCAF) compared with inflammatory CAFs (iCAF). Sonic Hedgehog overexpression promotes tumor growth, while Hedgehog pathway inhibition with the smoothened antagonist, LDE225, impairs tumor growth. Furthermore, Hedgehog pathway inhibition reduces myCAF numbers and increases iCAF numbers, which correlates with a decrease in cytotoxic T cells and an expansion in regulatory T cells, consistent with increased immunosuppression. Conclusions Hedgehog pathway inhibition alters fibroblast composition and immune infiltration in the pancreatic cancer microenvironment.
Citations (53)
... 35 Stress KRTs are known to be associated closely with the occurrence of various diseases, including psoriasis, cancer, and pachyonychia congenita. 8,[36][37][38][39][40] However, there is limited research on these important disease-related KRTs in ophthalmology. Some studies have shown that low expression of KRT16 plays an important role in highly myopic corneas and may be partly responsible for the lower corneal biomechanics in highly myopic eyes, 41 whereas in keratoconus patients, the expression of Krt16 is elevated. ...
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- Full-text available
October 2023
... Genetic research into pancreatitis risk factors typically begins with studies on CP. However, it is now widely recognized that there is a continuum between acute pancreatitis (AP), recurrent AP (RAP), and CP [111][112][113]. To explain this progression, the sentinel acute pancreatitis event (SAPE) model was proposed [114]. ...
- Citing Article
October 2022
Pancreatology
... Consistently, reduced expression of the variant allele has been observed in two pancreatic cancer cell lines heterozygous for the SPINK1 p.Asn34Ser haplotype [61]. RNA transcript analyses from three individuals heterozygous for p.Asn34Ser similarly revealed significantly fewer transcript reads from the variant allele compared to the wildtype (WT) allele [62]. ...
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October 2022
Gastroenterology
... For example, in 2019 women represented only 14.0 % of all current advanced endoscopy fellows in the USA. [13] Barriers for women to achieve expertise in EUS and interventional endoscopy are also reported from Italy [14] and India. [15] These barriers include implicit gender bias, lack of flexibility in the training programs with regard to family planning and family obligations (e.g., part-time work options, maternity leave, hours and call), exposure to fluoroscopy during childbearing age, lack of ergonomic equipment, and lack of female program directors and educators. ...
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- Full-text available
February 2021
... In PDAC, tumor cells secrete Hh ligand, while surrounding CAFs respond to these ligands and are subsequently activated [23]. Hh pathway activation impacts CAF states; inhibiting this pathway in a PDAC mouse model using the smoothened antagonist LDE225 was shown to reduce myCAF numbers while simultaneously enriching iCAFs, indicating a role of Hh signaling in shaping CAF phenotypes [24]. Other recent studies have shed light on the complex role of Hh pathway inhibition in PDAC and may explain the observed negative clinical outcomes. ...
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January 2021
... Inherent treatment resistance is a major challenge [11], and efforts to find better therapeutic strategies have only achieved incremental progress [8]. The importance of the tumor microenvironment (TME) for dictating responses to therapy and disease progression across different tumor entities is well established [1,[11][12][13][14]. Within the TME, cancer-associated fibroblasts (CAFs) deposit and remodel the extracellular matrix (ECM) [11,15], and immune cells establish an immunosuppressive milieu [12,16,17]. ...
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- Publisher preview available
November 2020
Nature Cancer
... Крім анамнестичних і клінічних даних, вивчено рівень сироваткового трипсиногену (ТпГ) та фекальної еластази-1 (ФЕ-1) за допомогою імуноферментних наборів «ELISA» виробництва «MyBio-Source» і «ScheBo ® Pancreatic Elastase 1™ Stool Test kit», відповідно до наданих до реактивів інструкцій. Пороговими значеннями концентрацій ферментів, нижче яких вже діагностували лабораторно підтверджену недостатність ПЗСА помірного ступеня, визнано показники <200 нг/мл для ФЕ-1 і <20 нг/мл для ТпГ [16]. ...
- Citing Article
September 2020
Pancreatology
... Hereditary pancreatitis, including cases associated with SPINK1 mutations, may lead to chronic inf lammation of the pancreas, increasing the risk of complications such as pancreatic insufficiency, diabetes, and an elevated risk of pancreatic cancer compared to the general population [6]. ...
- Citing Article
March 2020
Clinical Gastroenterology and Hepatology
... TAMs in turn secrete immunosuppressive cytokines such as TGF-B and IL-10, among others, that hinder recruitment and activity of effector T cells, regulatory T cells, and cytotoxic CD8+ T-cells [93,94]. Various other immune cell subtypes in the PDAC TME, namely myeloid-derived suppressor cells, Th17 cells, and neutrophils, also contribute to its immunosuppressive nature [95][96][97][98][99][100][101][102][103][104]. Additionally, signaling protein VEGF plays a role in the TME, similarly impairing the recruitment and effector mechanisms of immune cells by interfering with angiogenesis [105]. ...
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March 2020
... As such, it is questionable whether this score could be applied in PDAC patients to identify patients with an even higher risk of VTE. Subgroup analyses regarding the performance of the Khorana score in PDAC patients have shown that the absolute 6-month incidence of VTE in patients with a high-risk Khorana score ranges from 12% (pulmonary embolism (PE) or deep venous thrombosis (DVT) only) to 41% (superficial vein thrombosis and abdominal VTE included); in one study, the Khorana score had an AUROC of 0.65 [19,[89][90][91][92]. A recent large populationbased cohort study showed that the Khorana score was unable to identify PDAC patients at a particularly high risk of VTE (HR = 1.03, 95% CI [0.66-1.61]) ...
- Citing Article
November 2012
Blood