Meredith J. T. Jordan’s research while affiliated with The University of Sydney and other places

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Publications (73)


The Effect of β-Hydrogens on the Tropospheric Photochemistry of Aldehydes: Norrish Type 1, Triple Fragmentation, and Methylketene Formation from Propanal
  • Article

July 2024

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16 Reads

Journal of the American Chemical Society

Alireza Kharazmi

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Miranda F Shaw

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Formaldehyde energy-level diagram showing accessible PCO and PPO pathways following excitation to the indicated S1 levels
The S1 state is bound at these energies. Following internal conversion (IC) to S0, both PCO and PPO can occur, in competition with the formation of the molecular photoproducts, H2 + CO. The PCO threshold corresponds to cleavage of the CH bond, shown in green. PPO (red) occurs with a much lower threshold energy.
Action spectrum of HCHO measured by CRDS of the HO2 radical
HO2 signal is found throughout the spectral range as shown by the simulated HCHO absorption spectra shown in each inset with expanded resolution. Excitation above 30,300 cm⁻¹ (λ < 330 nm) produces HO2 by PCO (green). Rotational hot bands also excite HCHO into the PCO energy region. Excitation at λ > 336 nm forms HO2 radicals via PPO as shown by the clear HCHO spectral signatures (red). The upper wavelength axis is nonlinear.
Source data
The pressure dependence of HO2 formation
a, Action spectra of HCHO via the 2¹4¹ and 2¹4³ levels as a function of added O2 at 50 torr total pressure (balance helium). HO2 formed from PPO (2¹4¹ level) shows a strong, linear O2 pressure dependence. HO2 formed from PCO (2¹4³) is almost pressure independent (see text). b, HO2 number density and relative quantum yields as a function of O2 pressure for each level. The lines are predictions of the master equation model for PCO and PPO yields as a function of pressure. Error bars are estimates of experimental systematic uncertainty.
Source data
FTIR spectra of reaction end products following excitation of 1 torr HCHO to the 2¹4¹ level in different buffer gases, as indicated
The top spectrum shows only CO is produced from photolysis of neat HCHO in the PPO region. Addition of N2 has no effect. Addition of the same amount of O2 forms HCOOH, which continues to be formed even at 1 bar of synthetic air. Spectra are on the same scale but displaced vertically for presentation. The asterisks show where a sharp residual HCHO Q-branch feature remains even after subtraction of the parent spectrum.
Source data
Energy dependence of rate coefficients and quantum yields
a, First-order, microscopic rate coefficients used in master equation calculations. Two different PPO rate coefficients are shown: a first principles calculation using the method of Maranzana et al.⁴⁴ and an empirical, fitted exponential model. Each PPO rate coefficient is pseudo first order for 30 torr O2. Dashed lines show energetic limits for various processes and a comb indicates the energy of the four initially excited S1 states. b, Quantum yields for various processes in CRDS experiments at 30 torr added O2 and a temperature of 300 K, compared with experimental data in this work. Error bars represent estimated experimental uncertainty. c, Quantum yields at atmospheric pressure and 300 K: (1) ref. ¹⁸, (2) ref. ¹⁹, (3) ref. ²⁰, (4) ref. ²¹, (5) ref. ²², (6) ref. ²³, (7) ref. ²⁴.
Source data
Photophysical oxidation of HCHO produces HO2 radicals
  • Article
  • Publisher preview available

July 2023

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282 Reads

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9 Citations

Nature Chemistry

Formaldehyde, HCHO, is the highest-volume carbonyl in the atmosphere. It absorbs sunlight at wavelengths shorter than 330 nm and photolyses to form H and HCO radicals, which then react with O2 to form HO2. Here we show HCHO has an additional HO2 formation pathway. At photolysis energies below the energetic threshold for radical formation we directly detect HO2 at low pressures by cavity ring-down spectroscopy and indirectly detect HO2 at 1 bar by Fourier-transform infrared spectroscopy end-product analysis. Supported by electronic structure theory and master equation simulations, we attribute this HO2 to photophysical oxidation (PPO): photoexcited HCHO relaxes non-radiatively to the ground electronic state where the far-from-equilibrium, vibrationally activated HCHO molecules react with thermal O2. PPO is likely to be a general mechanism in tropospheric chemistry and, unlike photolysis, PPO will increase with increasing O2 pressure.

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An assessment of the tropospherically accessible photo-initiated ground state chemistry of organic carbonyls

January 2022

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76 Reads

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8 Citations

Carbonyls are among the most abundant volatile organic compounds in the atmosphere. They are central to atmospheric photochemistry as absorption of near-UV radiation by the C=O chromophore can lead to photolysis. If photolysis does not occur on electronic excited states, non-radiative relaxation to the ground state will form carbonyls with extremely high internal energy. These “hot” molecules can access a range of ground state reactions. Up to nine potential ground state reactions are investigated at the B2GP-PLYP-D3/def2-TZVP level of theory for a test set of 20 representative carbonyls. Almost all are energetically accessible under tropospheric conditions. Comparison with experiment suggests the most significant ground state dissociation pathways will be concerted triple fragmentation in saturated aldehydes, Norrish type III dissociation to form another carbonyl, and H2 loss involving the formyl H atom in aldehydes. Tautomerisation, leading to more reactive unsaturated species, is also predicted to be energetically accessible and is likely to be important when there is no low-energy ground state dissociation pathway, for example in α,β-unsaturated carbonyls and some ketones. The concerted triple fragmentation and H2-loss pathways have immediate atmospheric implications for global H2 production, and tautomerisation has implications for the atmospheric production of organic acids.


Figure 3. The 20 carbonyls in the dataset, colour-coded according to carbonyl class.
Figure 7. Zero-point vibrational energy corrected B2GP-PLYP-D3/def2-TZVP S0 H2-loss thresholds. Solid lines: formyl-H + α-H; Dashed lines: α-H + β-H; Dot-dashed lines: β-H + γ-H.
Figure 10. Optimised B2GP-PLYP-D3/def2-TZVP S0 TSs and zero-point vibrational energy corrected threshold energies for enal-ketene tautomerisation, as shown. Key structural parameters in Å and degrees.
Photo-initiated ground state chemistry: How important is it in the atmosphere?

June 2021

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131 Reads

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2 Citations

Carbonyls are among the most abundant volatile organic compounds in the atmosphere. They are central to atmospheric photochemistry as absorption of near-UV radiation by the C=O chromophore can lead to photolysis. If photolysis does not occur on electronic excited states, non-radiative relaxation to the ground state will form carbonyls with extremely high internal energy. These “hot” molecules can access a range of ground state reactions. Up to nine potential ground state reactions are investigated at the B2GP-PLYP-D3/def2-TZVP level of theory for a dataset of 20 representative carbonyls. Almost all are energetically accessible under tropospheric conditions. Comparison with experiment suggests the most significant ground state dissociation pathways will be concerted triple fragmentation in saturated aldehydes, Norrish type III dissociation to form another carbonyl, and H2-loss involving the formyl H atom in aldehydes. Tautomerisation, leading to more reactive unsaturated species, is also predicted to be energetically accessible and is likely to be important when there is no low-energy ground state dissociation pathway, for example in α,β-unsaturated carbonyls and some ketones. The concerted triple fragmentation and H2-loss pathways have immediate atmospheric implication to global H2 production and tautomerisaton has implication to the atmospheric production of organic acids.


The Under-Explored Possibilities of Ground State Carbonyl Photochemistry

September 2020

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55 Reads

Carbonyls are among the most abundant volatile organic compounds in the atmosphere, and their C=O chromophores allow them to photolyse. However, carbonyl photolysis reactions are not restricted to the excited state: the C=O chromophore allows relaxation to, and reaction on, the ground state, following photon absorption. In this paper, the energetic thresholds for eight ground state reactions across twenty representative carbonyl species are calculated using double-hybrid density functional theory. Most reactions are found to be energetically accessible within the maximum photon energy available in the troposphere, but are absent in contemporary atmospheric chemistry models. Structure–activity relationships are then elucidated so that the significance of each reaction pathway for particular carbonyl species can be predicted based upon their class. The calculations here demonstrate that ground state photolysis pathways are ubiquitous in carbonyls and should not be ignored in the analysis of carbonyl photochemistry.</div


Structural Causes of Singlet/triplet Preferences of Norrish Type II Reactions in Carbonyls

September 2020

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41 Reads

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2 Citations

Photolysis thresholds are calculated for the Norrish Type II (NTII) intramolecular γ-hydrogen abstraction reaction in 22 structurally informative carbonyl species. The B2GP-PLYP excited state S 1 and T 1 thresholds agree well with triplet quenching experiments. However, many linear-response methods deliver poor S 1 energetics, which is explained by a S 1/ S 0 conical intersection in close proximity to the S 1 transition state. Multiconfigurational CASSCF calculations confirm a conical intersection features across all carbonyl classes. Structure–activity relationships are determined that could be used in atmospheric carbonyl photochemsitry modelling. This is exemplified for butanal, whose NTII quantum yields are too low when used as a ‘surrogate’ for larger carbonyls, since butanal lacks the γ-substitution that stabilises the 1,4- biradical. Reaction on T 1 dominates only in species where the S 1 thresholds are high — typically ketones. The α, β-unsaturated carbonyls cannot cleave the α–β bond, causing them to photoisomerise. A concerted S 0 NTII mechanism is calculated to be viable and may explain the recent detection of NTII photoproducts in the photolysis of pentan-2-one below the T 1 threshold.</div


Predicting Carbonyl Excitation Energies Efficiently Using EOM-CC Trends

September 2020

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30 Reads

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1 Citation

We approach the problem of predicting excitation energies of diverse, larger (5–6 carbons) carbonyl species central to earth’s tropospheric chemistry. Triples contributions are needed for the vertical excitation energy (Evert), while EOM-CCSD//TD-DFT calculations provide acceptable estimates for the S1 relaxation energy (Erelax), and (TD-)DFT suffices for the S0 → S1 zero-point vibration energy correction (∆EZPVE). Perturbative triples corrections deliver Evert values close in accuracy to full iterative triples EOM-CC calculations. The error between EOM-CCSD and triples-corrected E vert values appears to be systematic and can be accounted for with scaling factors. However, saturated and α,β-unsaturated carbonyls must be treated separately. Double-hybrid S0 minima can be used to calculate Evert with negligible loss in accuracy, relegating the O(N5) expense of CCSD to only single-point energy and excitation calculations. This affordable protocol can be applied to all volatile carbonyl species. E0−0 predictions do overestimate measured values by ∼8 kJ/mol due to a lack of triples contribution in E relax, but this overestimation is systematic and the mean unsigned error is within 4 kJ/mol once this is accounted for.</div


Rotational resonances in the H 2 CO roaming reaction are revealed by detailed correlations

August 2020

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122 Reads

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28 Citations

Science

Duality of roaming mechanism in H 2 CO The phenomenon of roaming in chemical reactions (that is, bypassing the minimum energy pathway from unlikely geometries) has attracted a great deal of attention in the chemical reaction dynamics community over the past decade and still demonstrates unexpected results. Using velocity-map imaging of state-selected H 2 products of H 2 CO photodissociation, Quinn et al. discovered the bimodal structure of rotational distribution of the other product fragment, CO. Quasiclassical trajectories showed that this bimodality originates from two distinctive reaction pathways that proceed by the trans or cis configuration of O–C–H⋯H, leading to high or low rotational excitations of CO, respectively. Whether such a mechanism is present in the many other chemical reactions for which roaming reaction pathways have been reported is yet to be determined. Science , this issue p. 1592


Structural Effects on the Norrish Type I α-Bond Cleavage of Tropospherically Important Carbonyls

November 2019

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110 Reads

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17 Citations

The Journal of Physical Chemistry A

Norrish Type I (NTI) -bond cleavage is the dominant photolysis mechanism in small carbonyls and is an important source of radicals in the troposphere. In non-symmetric species two cleavages are possible, NTIa and NTIb, forming larger and smaller alkyl radicals, respectively. For a dataset of 20 small, atmospherically relevant carbonyls we predict NTIa and NTIb thresholds on the S0, S1 and T1 electronic states. The calculated NTIaT1 thresholds give a mean absolute deviation (MAD) of 5.8 kJ/mol with respect to the available experimental thresholds of 5 carbonyls. In addition, the intrinsic barrier heights to dissociation on the S0, S1 and T1 electronic states are predicted. We find RI-B2GP-PLYP/def2-TZVP calculations on S0 and unrestricted RI-B2GP-PLYP/def2-TZVP calculations on T1 give MADs of 6.1 kJ/mol for S0 asysmptotic energies and 6.3 kJ/mol for S0 → T1 0–0 excitation energies, with respect to available experimental data. A composite method is used to determine S1 thresholds, with bt-STEOM-CCSD/cc-pVQZ calculation of vertical excitation energies and TD-RI-B3LYP/def2-TZVP calculations on S1, which achieves a MAD of 7.2 kJ/mol, with respect to experimental 0–0 excitation energies. Our calculations suggest, with the exception of bifunctional carbonyls and enones, NTI reactions on S1 are unlikely to be important at tropospherically relevant photolysis energies (< 400 kJ/mol). In contrast, at these energies almost all possible NTI channels on T1 are open and all barrierless S0 NTI dissociations are accessible. Our calculations allow a number of structural effects on both 0–0 excitation energies and intrinsic reaction barriers, on a given electronic state, to be elucidated and rationalised.


Dynamics and Quantum Yields of H2 + CH2CO as a Primary Photolysis Channel in CH3CHO

December 2018

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103 Reads

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23 Citations

Physical Chemistry Chemical Physics

The first experimental observation of the primary photochemical channel of acetaldehyde leading to the formation of ketene (CH2CO) and hydrogen (H2) molecular products is reported. Acetaldehyde (CH3CHO) was photolysed in a molecular beam at 305.6 nm and the resulting H2 product characterized using velocity-map ion (VMI) imaging. Resonance-enhanced multiphoton ionization (REMPI), via two-photon excitation to the double-well EF 1∑g+ state, was used to state-selectively ionize the H2 and determine angular momentum distributions for H2 (ν = 0) and H2 (ν = 1). Velocity-map ion images were obtained for H2 (ν = 0 and 1, J = 5), allowing the total translational energy release of the photodissociation process to be determined. Following photolysis of CH3CHO in a gas cell, the CH2CO co-fragment was identified, using Fourier transform infrared spectroscopy, by its characteristic infrared absorption at 2150 cm–1. The measured quantum yield of the CH2CO + H2 product channel at 305.0 nm is φ = 0.008 ± 0.002 for both 15 Torr of neat CH3CHO and a mixture with 745 Torr of N2. Although small, this result has implications to the atmospheric photochemistry of carbonyls and this reaction represents a new tropospheric source of H2. Quasi-classical trajectory (QCT) simulations on a zero-point energy corrected reaction-path potential are also performed. The experimental REMPI and VMI image distributions are not consistent with the QCT simulations, indicating a non reaction-path mechanism should be considered.


Citations (60)


... [9][10][11][12][13][14][15][16][17] There are many laser spectroscopybased techniques such as integrated cavity output spectroscopy (ICOS), cavity ring-down spectroscopy (CRDS), Faraday rotation spectroscopy (FRS), and photoacoustic spectroscopy (PAS). [18][19][20][21][22][23][24][25][26][27][28] PAS has the advantages of relative simplicity, and is widely used for trace gas detection. McNaghten et al. reported a multitrace gases PAS sensor based on a cantilever microphone. ...

Reference:

Multigas nonresonant photoacoustic spectroscopy sensor based on a broadband radiation source
Photophysical oxidation of HCHO produces HO2 radicals

Nature Chemistry

... Residential coal combustion produces high amounts of such aromatic organic compounds, although the relative contribution of different species to the total organic gaseous emission likely varies depending on the fuel and combustion conditions [4,6,21]. Furthermore, the OGCs from combustion processes may influence the oxidant availability and reaction pathways in ambient air [22][23][24]. ...

An assessment of the tropospherically accessible photo-initiated ground state chemistry of organic carbonyls

... We assigned the 1% quantum yield found by Harrison et al. (2019) for acetaldehyde to the selected aldehydes tested in GEOS-Chem, analogously to what was done for the box modelling (Section 2.1). The 1% from acetaldehyde 365 was taken as the reference quantum yield to test given that measurements for the rest of the aldehydes are not available, but the energy barriers for the production of H 2 from aldehyde photolysis indicates that the dissociation channels are accessible (Rowell et al., 2021). For acetaldehyde, glycolaldehyde, HPALD and RCHO, a branching ratio on the existing photolysis channels was added to account for the primary production of H 2 in addition to the existing photolysis products. ...

Photo-initiated ground state chemistry: How important is it in the atmosphere?

... Rowell et al. [21,22] investigated 20 carbonyl compounds, excluding 2-butenedial. The photochemical process can occur in either T 1 or S 1 states, depending on the reactants and the S 1 energy threshold, which is typically the Norrish type II reaction's threshold. ...

Structural Causes of Singlet/triplet Preferences of Norrish Type II Reactions in Carbonyls
  • Citing Preprint
  • September 2020

... It is both directly emitted and formed as an oxidation product of volatile organic species. Several well-characterized photochemical processes follow absorption of light [7][8][9][10][11][12][13] . As a small molecule, HCHO is also a benchmark for high-level ab initio theory [14][15][16][17] . ...

Rotational resonances in the H 2 CO roaming reaction are revealed by detailed correlations
  • Citing Article
  • August 2020

Science

... With saturated carbonyls, photolysis in the T 1 state is competitive or dominant. The α-bond cleavage photolysis of 20 atmospherically relevant carbonyls is possible in the T 1 state or on an internally hot S 0 state [23]. ...

Structural Effects on the Norrish Type I α-Bond Cleavage of Tropospherically Important Carbonyls
  • Citing Article
  • November 2019

The Journal of Physical Chemistry A

... Pathway (8) was first detected at 157.6 nm, 43 although it was later found also at 306 nm. 44 Pathway (9) has been observed at 157.6 nm. 43 Motivated by the large variety of experimental works, theoretical studies on acetaldehyde are also abundant in the literature. ...

Dynamics and Quantum Yields of H2 + CH2CO as a Primary Photolysis Channel in CH3CHO
  • Citing Article
  • December 2018

Physical Chemistry Chemical Physics

... The main sources of HCOOH include direct emissions from terrestrial vegetation (Andreae et al., 1988), biomass and biofuel burning (Akagi et al., 2011;Goode et al., 2000;Yokelson et al., 2009), fossil-fuel combustion (Kawamura et al., 2000;Zervas et al., 2001a, b), and soil emissions (Sanhueza and Andreae, 1991). The secondary gasphase formation mechanisms of HCOOH are mainly the oxidation of volatile organic compounds (VOCs), including ozonolysis of terminal alkenes (Neeb et al., 1997), alkyne oxidation (Bohn et al., 1996), OH-initiated isoprene oxidation (Paulot et al., 2009), monoterpene oxidation (Larsen et al., 2001), keto-enol tautomerisation (Andrews et al., 2012;Shaw et al., 2018), and q OH oxidation of methyldioxy radicals (CH 3 O 2 q ) (Bossolasco et al., 2014). HCOOH is primarily removed from the atmosphere through wet and dry deposition, with a minor sink being photo-oxidation by q OH (Atkinson et al., 2006). ...

Photo-tautomerization of acetaldehyde as a photochemical source of formic acid in the troposphere

... The ratio of the QCT and CVT/µOMT rate coefficients varies from 1.08 to 2.32, increases as T decreases. In order to partly remedy the zero-point energy leakage issue in the QCT, [53] the so-called passive method ("hard" ZPE constraints) is employed when mentioned hereafter. Namely, only those reactive trajectories with the vibrational energy of either form products larger than or equal to their ZPE are considered in the statistics. ...

Zero-point energy conservation in classical trajectory simulations: Application to H 2 CO
  • Citing Article
  • May 2018

... The second-order primitive approximation (PA) propagator has been widely used in Path Integral Monte Carlo (PIMC) since its inception [1][2][3]. However, even after the introduction of the fourth-order trace Takahashi-Imada (TI) propagator [4], it was not realized that the PA propagator's convergence was so very poor until recently when its energies were compared with those from truly fourth-order propagators [5][6][7][8][9][10]. Moreover, the wide-spread use of the PA propagator in the past has left a lasting, but misleading impression that PIMC generally requires hundreds of short-time propagators in order to extract the ground state energy. ...

Path integrals with higher order actions: Application to realistic chemical systems
  • Citing Article
  • February 2018