Matt Davis’s research while affiliated with Aarhus University and other places

Various authors have suggested that extinctions and extirpations of large mammalian herbivores during the last ca. 50,000 years have altered ecological processes. Yet, the degree to which herbivore extinctions have influenced ecosystems has been difficult to assess because past changes in herbivore impact are difficult to measure directly. Here, we indirectly estimated changes in (theorised) herbivore impact by comparing the functional composition of current large (≥ 10 kg) mammalian herbivore assemblages to those of a no‐extinction scenario. As an assemblage's functional composition determines how it interacts with its environment, changes in functional compositions should correspond to changes in ecological impacts. We quantified functional composition using the body mass, diet and life habit of all wild herbivorous mammal species (n = 502) present during the last 130,000 years. Next, we assessed whether these changes in functional composition were large enough that the resulting assemblages could be considered functionally novel. Finally, we assessed where novel herbivore assemblages would most likely lead to changes in biome state. We found that 47% of assemblages are functionally novel, indicating fundamental changes in herbivore impacts occurred across much of the planet. On 20% of land, functionally novel herbivore assemblages have arisen in areas where alternative biome states are possible depending on the disturbance regime. Thus, in many regions, the late‐Quaternary extinctions and extirpations altered herbivore assemblages so profoundly that there were likely major consequences for ecosystem functioning.

Since prehistory, humans have altered the composition of ecosystems by causing extinctions and introducing species. However, our understanding of how waves of species extinctions and introductions influence the structure and function of ecological networks through time remains piecemeal. Here, focusing on Australia, which has experienced many extinctions and introductions since the Late Pleistocene, we compared the functional trait composition of Late Pleistocene (130,00–115,000 years before present [ybp]), Holocene (11,700–3,000 ybp), and current Australian mammalian predator assemblages (≥70% vertebrate meat consumption; ≥1 kg adult body mass). We then constructed food webs for each period based on estimated prey body mass preferences. We found that introduced predators are functionally distinct from extinct Australian predators, but they rewire food webs toward a state that closely resembles the Late Pleistocene, prior to the megafauna extinctions. Both Late Pleistocene and current-day food webs consist of an apex predator and three smaller predators. This leads to food web networks with a similar total number of links, link densities, and compartmentalizations. However, this similarity depends on the presence of dingoes: in their absence, food webs become simplified and reminiscent of those following the Late Pleistocene extinctions. Our results suggest that recently established predators, even those implicated in species extinctions and declines, can restore complexity to food webs simplified by extinction.

Aim Reinstating large, native herbivores is an essential component of ecological restoration efforts, as these taxa can be important drivers of ecological processes. However, many herbivore species have gone globally or regionally extinct during the last 50,000 years, leaving simplified herbivore assemblages and trophically downgraded ecosystems. Here, we discuss to what extent trophic rewilding can undo these changes by reinstating native herbivores. Location Global. Time period We report functional trait changes from the Late Pleistocene to the present, and estimated trait changes under future scenarios. Major taxa studied Wild, large (≥ 10 kg), terrestrial, mammalian herbivores. Methods We use a functional trait dataset containing all late Quaternary large herbivores ≥ 10 kg to look at changes in the body mass and diet composition of herbivore assemblages, a proxy for species’ ecological effects. First, we assess how these traits have changed from the Late Pleistocene to the present. Next, we quantify how the current body mass and diet composition would change if all extant, wild herbivores were restored to their native ranges (and if no functional replacements were used), exploring scenarios with different baselines. Results Defaunation has primarily removed large and grazing herbivores. Reinstating extant herbivores across their native ranges would reverse these changes, especially when reinstating them to their prehistoric distributions. It would partially restore herbivore body mass and diet composition to pre‐anthropogenic conditions. However, in the absence of complementary interventions (e.g., introducing functional replacements), many herbivore assemblages would remain down‐sized and browser dominated, relative to pre‐anthropogenic conditions. Main conclusions Many terrestrial herbivore assemblages—and hence ecosystems—would remain trophically downgraded, even after bringing back all extant, native herbivores. Therefore, complementary interventions would be required to achieve complete functional restoration. Nevertheless, our findings suggest that reintroducing the remaining native herbivores would diversify the herbivory and disturbances of herbivore assemblages.

Prehistoric and recent extinctions of large-bodied terrestrial herbivores had significant and lasting impacts on Earth’s ecosystems due to the loss of their distinct trait combinations. The world’s surviving large-bodied avian and mammalian herbivores remain among the most threatened taxa. As such, a greater understanding of the ecological impacts of large herbivore losses is increasingly important. However, comprehensive and ecologically-relevant trait datasets for extinct and extant herbivores are lacking. Here, we present HerbiTraits , a comprehensive functional trait dataset for all late Quaternary terrestrial avian and mammalian herbivores ≥10 kg (545 species). HerbiTraits includes key traits that influence how herbivores interact with ecosystems, namely body mass, diet, fermentation type, habitat use, and limb morphology. Trait data were compiled from 557 sources and comprise the best available knowledge on late Quaternary large-bodied herbivores. HerbiTraits provides a tool for the analysis of herbivore functional diversity both past and present and its effects on Earth’s ecosystems.

Identifying species with disproportionate contributions to biodiversity can lead to effective conservation prioritisation. Despite well-established methods for identifying endangered species adding inordinately to evolutionary diversity, in this context functional diversity has been overlooked. Here, we compare different metrics designed to identify threatened species that contribute strongly to functional diversity. We use the diverse and threatened global marine megafauna as a case study. We found that functional contributions of species are not fully captured in a single metric. Although we found a very strong correlation between functional specialisation and distinctiveness, functional uniqueness was only moderately correlated with the other two metrics and identified a different set of top-10 species. These functional contributions were then integrated and combined with extinction risk to identify species that are both important contributors to functional diversity and endangered. For instance, the top-10 Functionally Unique Specialized and Endangered (FUSE) species contains three critically endangered, five endangered and two vulnerable species which - despite comprising only 3% of species - are among the top 10% most functionally unique and hold 15% of the global functional richness. The FUSE index was remarkably robust to different mathematical formulations. Combining one or more facets of a species contribution to functional diversity with endangerment, such as with the FUSE index, adds to the toolbox for conservation prioritisation. Nevertheless, we discuss how these new tools must be handled with care alongside other metrics and information.

Significance Humans have caused extinctions of large-bodied mammalian herbivores over the past ∼100,000 y, leading to cascading changes in ecosystems. Conversely, introductions of herbivores have, in part, numerically compensated for extinction losses. However, the net outcome of the twin anthropogenic forces of extinction and introduction on herbivore assemblages has remained unknown. We found that a primary outcome of introductions has been the reintroduction of key ecological functions, making herbivore assemblages with nonnative species more similar to preextinction ones than native-only assemblages are. Our findings support calls for renewed research on introduced herbivore ecologies in light of paleoecological change and suggest that shifting focus from eradication to landscape and predator protection may have broader biodiversity benefits.

Significance Biodiversity is more than the number of species on Earth. It is also the amount of unique evolutionary history in the tree of life. We find that losses of this phylogenetic diversity (PD) are disproportionally large in mammals compared with the number of species that have recently gone extinct. This lost PD can only be restored with time as lineages evolve and create new evolutionary history. Without coordinated conservation, it will likely take millions of years for mammals to naturally recover from the biodiversity losses they are predicted to endure over the next 50 y. However, by prioritizing PD in conservation, we could potentially save billions of years of unique evolutionary history and the important ecological functions they may represent.

Data needed for macroecological analyses are difficult to compile and often hidden away in supplementary material under non-standardized formats. Phylogenies, range data, and trait data often use conflicting taxonomies and require ad hoc decisions to synonymize species or fill in large amounts of missing data. Furthermore, most available data sets ignore the large impact that humans have had on species ranges and diversity. Ignoring these impacts can lead to drastic differences in diversity patterns and estimates of the strength of biological rules. To help overcome these issues, we assembled PHYLACINE, The Phylogenetic Atlas of Mammal Macroecology. This taxonomically integrated platform contains phylogenies, range maps, trait data, and threat status for all 5,831 known mammal species that lived since the last interglacial (~130,000 years ago until present). PHYLACINE is ready to use directly, as all taxonomy and metadata are consistent across the different types of data, and files are provided in easy-to-use formats. The atlas includes both maps of current species ranges and present natural ranges, which represent estimates of where species would live without anthropogenic pressures. Trait data include body mass and coarse measures of life habit and diet. Data gaps have been minimized through extensive literature searches and clearly labelled imputation of missing values. The PHYLACINE database will be archived here as well as hosted online so that users may easily contribute updates and corrections to continually improve the data. This database will be useful to any researcher who wishes to investigate large-scale ecological patterns. Previous versions of the database have already provided valuable information and have, for instance, shown that megafauna extinctions caused substantial changes in vegetation structure and nutrient transfer patterns across the globe.