Massimo Pigliucci’s research while affiliated with City College of New York and other places

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Publications (189)


The three habitat types on Long Island that support introduced Japanese knotweed: (A). Beach habitats represented here by the Port Jefferson Beach (PJB) site. (B). Marsh habitats represented here by the Center Moriches Marsh (CMM) site. (C). Roadside habitats represented here by the Center Moriches Roadside (CMR) site. We cleared standing knotweed to set up transplant gardens in each habitat: (D). Beach transplant gardens represented here by the Horton’s Point (HP) site. (E). Marsh habitats represented here by the Crystal Brook Hollow (CBH) site. (F). Roadside transplant gardens represented here by the Riverhead Chauncey (RHC) site.
Design of the four reciprocal transplant experiments between beach, marsh, and roadside habitat sites around Long Island, NY. We used four sites of each habitat type for 12 total sites as origins for plant material and as locations of transplant gardens (see also Ref.⁸⁰). By creating four reciprocal transplant experiments, we maximized our ability to replicate cuttings of each rhizome in one site of each of the habitats and test for superior performance in the original “local” site.
Reaction norms of (means ± 95% CrI) across three transplant habitat gardens for plants from the three habitat origins: (A) final height, (B) total number of leaves, (C) total leaf area of all leaves at final harvest, (D) succulence as measured on all leaves at final harvest, (E) dry shoot biomass, (F) dry root biomass and (G) dry root biomass:dry shoot biomass ratio at final harvest. Beach origin plants are depicted with blue lines, marsh origin with green and roadside origin with red.
Differences in trait responses across three transplant habitat gardens for plants from the three habitat origins: (A) final height, (B) total number of leaves, (C) total leaf area of all leaves at final harvest, (D) succulence as measured on all leaves at final harvest, (E) dry shoot biomass, (F) dry root biomass and (G) dry root biomass:dry shoot biomass ratio at final harvest. Beach sites are depicted with blue lines, marsh sites with green and roadside sites with red.
Local adaptation is supported in (A) marsh plants compared to beach and roadside plants grown in marsh habitats as measured by total dry biomass (g) and (B) survival of beach plants compared to roadside plants grown in beach habitats, and roadside plants compared to beach or marsh plants grown in roadside habitats. Survival in R. japonica (dashed lines) and R. × bohemica (solid lines) are indicated separately. Plants grown in beach sites are depicted with blue lines, marsh sites with green and roadside sites with red. Symbols and whiskers are differences of fitted estimates and credible intervals estimated from statistical models (see “Methods” for details).
Rapid phenotypic differentiation in the iconic Japanese knotweed s.l. invading novel habitats
  • Article
  • Full-text available

June 2024

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95 Reads

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Massimo Pigliucci

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Understanding the mechanisms that underlie plant invasions is critical for management and conservation of biodiversity. At the same time, invasive species also provide a unique opportunity to study rapid adaptation to complex environmental conditions. Using four replicate reciprocal transplant experiments across three habitats, we described patterns of phenotypic response and assessed the degree of local adaptation in knotweed populations. We found plants from beach habitats were generally smaller than plants from marsh and roadside habitats when grown in their home habitat. In the marsh habitat, marsh plants were generally larger than beach plants, but not different from roadside plants. There were no differences among plants grown in the roadside habitat. We found mixed evidence for local adaptation: plants from the marsh habitat had greater biomass in their “home” sites, while plants from beaches and roadsides had greater survival in their “home” sites compared to other plants. In sum, we found phenotypic differentiation and some support for the hypothesis of rapid local adaptation of plants from beach, marsh and roadside habitats. Identifying whether these patterns of differentiation result from genetic or heritable non-genetic mechanisms will require further work.

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Figure 3
Figure 4
Breakdown of mortality by group within transplant garden and average for each habitat type.
Rapid phenotypic differentiation in the iconic Japanese knotweed s.l. invading novel habitats

October 2023

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37 Reads

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1 Citation

Understanding the mechanisms that underlie plant invasions is critical for management and conservation of biodiversity. At the same time, invasive species also provide a unique opportunity to study rapid adaptation to complex environmental conditions. Using four replicate reciprocal transplant experiments across three habitats, we described patterns of phenotypic response and assessed the degree of local adaptation in knotweed populations. We found plants from beach habitats were generally smaller than plants from marsh and roadside habitats when grown in their home habitat. In the marsh habitat, marsh plants were generally larger than beach plants, but not different from roadside plants. There were no differences among plants grown in the roadside habitat. We found mixed evidence for local adaptation: plants from the marsh habitat had greater biomass in their “home” sites, while plants from beaches and roadsides had greater survival in their “home” sites compared to other plants. In sum, we found phenotypic differentiation and some support for the hypothesis of rapid local adaptation of plants from beach, marsh and roadside habitats. Identifying whether these patterns of differentiation result from genetic or heritable non-genetic mechanisms will require further work.


Breakdown of mortality by group within transplant habitat and average for each habitat type
Rapid phenotypic differentiation and local adaptation in Japanese knotweed s.l. ( Reynoutria japonica and R . × bohemica , Polygonaceae) invading novel habitats

March 2022

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61 Reads

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1 Citation

PREMISE Many plant invaders like the Japanese knotweeds are thought to colonize new habitats with low genetic diversity. Such species provide an opportunity to study rapid adaptation to complex environmental conditions. METHODS Using replicate reciprocal transplants of clones across three habitats, we described patterns of phenotypic response and assessed degree of local adaptation. KEY RESULTS We found plants from beach habitats had decreased height, number of leaves, leaf area, and biomass allocation to roots and shoots compared to plants from marsh and roadside habitats when grown in their home habitat. In the marsh habitat, marsh plants were generally larger than beach plants, but not different from roadside plants. There were no differences among plants from different habitats grown in the roadside habitat. Despite this evidence of differentiation in beach and marsh habitats, we found mixed evidence for local adaptation. In their “home site” plants from the marsh habitat had greater biomass than plants from the beaches but not compared to plants from roadsides. Biomass comparisons in other habitats were either maladaptive or not significant. However, plants from the roadside had greater survival in their “home site” compared to foreign plants. There were no differences in survival in the other habitats. CONCLUSIONS We found phenotypic differentiation associated with habitats despite the low reported genetic diversity for these populations. Our results partially support the hypothesis of local adaptation in marsh and roadside habitats. Identifying whether these patterns of differentiation result from genetic or heritable non-genetic mechanisms will require further work.


Presenting philosophy – What science has taught me about it

October 2021

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15 Reads

Human Affairs

Presenting philosophy properly, in a way that is clear and accessible to our target audience, is of paramount importance. In this essay I draw on my dual experience as a scientist and a philosopher (as well as science and philosophy communicator) to arrive at some general recommendations for good practice. Specifically, I discuss why presentation matters, whether a bad presentation style is a valid criticism of a philosopher’s work, how we may adapt our message to the variety of communication media available today, and what, if any, is the relationship between how we present and how we conceive of philosophy itself.


Epigenetic Inheritance. A Decade into the Extended Evolutionary Synthesis

February 2021

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686 Reads

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36 Citations

PARADIGMI

A decade ago, a landmark edited collection of essays made official the ongoing quest for an Extended Evolutionary Synthesis (EES), beyond the classic Modern Synthesis that took shape in the 1930s and ‘40s. When Evolution – The Extended Synthesis was published, research on epigenetic inheritance was at its onset, with the theory being far ahead of the empirical results. An important book, Evolution in Four Dimensions by Eva Jablonka and Marion Lamb, articulated the notion of multiple channels of inheritance, including genetic, epigenetic, behavioral, and symbolic. These multiple modes of inheriting information within the biosphere joined a number of other empirical findings and conceptual advances to articulate the early version of the EES. In the intervening decade, our empirical understanding of epigenetic inheritance has improved, so it seems that a reevaluation of where we are and where we may possibly be going, is in order. Progress is constrained by the fact that understanding systems of inheritance requires time-consuming experimental designs that incorporate multiple generations. Further, technological limitations have yet to be overcome and most of our understanding of genome level processes is still confined to model species. In this paper we discuss what we have learned so far about epigenetic inheritance and what developments are needed to make further progress. We conclude with a discussion of the current role of epigenetic inheritance in the EES, and how it has changed in the intervening decade.


More than provocative, less than scientific: A commentary on the editorial decision to publish Cofnas (2020)

August 2020

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391 Reads

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4 Citations

Philosophical Psychology

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This letter addresses the editorial decision to publish the article, “Research on group differences in intelligence: A defense of free inquiry” (Cofnas, 2020). Our letter points out several critical problems with Cofnas's article, which we believe should have either disqualified the manuscript upon submission or been addressed during the review process and resulted in substantial revisions.


Star Trek as Philosophy: Spock as Stoic Sage

November 2019

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27 Reads

It has been suggested that Gene Roddenberry, the creator of the original Star Trek series (TOS), more or less consciously built the equivalent of a philosophical argument in favor of Stoic philosophy by centering his story lines on the interacting and exquisitely complementary characters of Mr. Spock, Captain Kirk, and Doctor McCoy. Spock in particular was apparently purposefully meant by Roddenberry to represent Stoicism as he understood it. Modern practitioners of Stoicism, however, tend to see Spock as a “stoic” (lower-s) in the vernacular sense of the term: going through life constantly sporting a stiff upper lip and suppressing his emotions. I argue in this essay that, on the contrary, the evolution of Spock from the young officer serving on the Enterprise NCC-1701 to ambassador to the Romulans in the last movie based on TOS can be understood as the story of someone entering the path to sagehood in the Stoic sense. And yes, Stoicism definitely is about far more than stiff lips and the suppression of emotions.


Is there a will to meaning?

June 2018

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83 Reads

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1 Citation

Annals of the New York Academy of Sciences

All thinking human beings seek an answer to the question, What is the meaning of life? Herein are discussed answers to this question, drawing on various traditions, but especially from Stoicism.


The power of meaning: the quest for an existential roadmap: The power of meaning

May 2018

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91 Reads

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1 Citation

Annals of the New York Academy of Sciences

Where can we turn to find the story of our lives-an existential roadmap that explains where we have come from, why we are here, and where we are headed? Must each of us discover meaning within the context of our individual lives, or are there universal sources of meaning that we can all access? Is there any relationship between living a meaningful life and the quality of our health and well-being? And how can we find meaning in the face of adversity and suffering? Neurologist Jay Lombard, philosophers Massimo Pigliucci and Michael Ruse, and author Emily Esfahani Smith shed light on these perennial questions in conversation with Steve Paulson, executive producer and host of To the Best of Our Knowledge.


Citations (74)


... In the developmental context, phenocopying was the starting point for studies of assimilation by Waddington and others (137,103,95,138). Assimilation is a distinct hypothesis that asks whether environmentally induced phenotypes (i.e., 'phenocopies') can then become genetically encoded. ...

Reference:

Soft Modes as a Predictive Framework for Low Dimensional Biological Systems across Scales
Elements of an Extended Evolutionary Synthesis
  • Citing Chapter
  • March 2010

... This result confirms previous findings that also teachers, like the general public, may hold pseudoscientific beliefs [53], partly due to uninformed views about NOS [83]. The higher score for generic pseudoscientific beliefs not only confirms previous findings in the Italian context [27,51], despite the many societal changes that have occurred since when the studies were carried out, but also suggests that teachers are hardly aware of the demarcation between science and pseudoscience [84]. In contrast, teachers seem to be more aware of conspiracy theories, confirming previous findings in other international contexts [85]. ...

Why the Demarcation Problem Matters
  • Citing Chapter
  • January 2013

... Although IAS generally display greater plasticity, this is not always correlated with a fitness benefit [91]. Physiological variation of Japanese knotweed grown in different habitats has been recorded in previous studies, including differences in height, number of leaves, leaf surface area and biomass allocation [92,93]. All the rhizomes used for these controlled growth experiments were extracted from the same source, but recent research indicates that the environmental adaptations observed here may be influenced by the original source of the rhizomes and could have differed if these were collected from another habitat type [93]. ...

Rapid phenotypic differentiation and local adaptation in Japanese knotweed s.l. ( Reynoutria japonica and R . × bohemica , Polygonaceae) invading novel habitats

... Whether or not the differences observed here are genetically induced cannot be assessed by our set-up, but the prevalence of the significant difference, detectable in the epigenetic signature that prevailed between origins through cultivation, is a strong indicator for the eco-genotype approach (Scheschonk et al., 2022). This presumes that adaptation to a specific location is not solely a matter of genetic nature (fixed only in the DNA), but that epigenetic mechanisms play an important role in local adaptation and eco-evolutionary dynamics of a species (Jablonka & Lamb, 2015;Richards & Pigliucci, 2020). Since methylation and gene expression were shown to be negatively correlated in the S. japonica nuclear and chloroplast genes (Fan, Han, et al., 2020;Teng et al., 2021) the origin-specific methylation of the gene coding for apoprotein A2 (Figure 3, Table S6 sheet 'ST6 Origin') may be involved in originspecific photosynthetic capacity. ...

Epigenetic Inheritance. A Decade into the Extended Evolutionary Synthesis

PARADIGMI

... Strong naturalism runs the risk of scientism, i.e. over-reliance on what is currently perceived as factual 48,49 , while strong normativism runs the risk of a relativism where any socioculturally Are there biological and behavioral states that can be characterized as dysfunctional or malfunctional in objective terms independent of human interests? ...

Science Unlimited?: The Challenges of Scientism

... Boundary problems rarely arise in isolation. Typically, the goal of demarcation (including in philosophy of science) is to honor or protect something perceived to be valuable, or to exclude or marginalize something perceived as bad (for a recent example, see Larsen et al. 2020). So it is here. ...

More than provocative, less than scientific: A commentary on the editorial decision to publish Cofnas (2020)

Philosophical Psychology

... This theory suggests that it is emotionally disturbing and, hence, unpleasant to hold inconsistent attitudes or behaviours. The will to be self-consistent is so important for individual psychological wellbeing that everyone is prone to reject external knowledge or facts as soon as they endanger his or her own previously built rationalization (Pigliucci 2012). As soon as the objective training of relationships to nature comes in conflict with individual previous assessments (through emotions or analogies), this novel knowledge is likely to be excluded from the existing rationalization of individuals. ...

Keynote Address—Nonsense on Stilts about Science: Field Adventures of a Scientist- Philosopher
  • Citing Conference Paper
  • January 2012

... Science is the result of cooperative efforts, and, as human beings, scientists will inevitably bring values to their work. To the extent that their values distort the production of scientific knowledge, the idea is that transformative criticism cancels out or at least mitigates their impact (Boudry & Pigliucci, 2018). However, values also have a positive and even indispensable role to play in science (Brown, 2020;Douglas, 2009;Longino, 1990). ...

Vindicating science – by bringing it down

... Mas por que crenças irracionais assumem as características externas da ciência? Blancke et al. (2017) sugerem que essa estratégia cultural é usada para tirar proveito da autoridade e do prestígio que a ciência detém em nossa sociedade. Em um contexto em que a ciência é altamente valorizada, adotar sua linguagem constitui uma estratégia eficaz para que credos irracionais ou infundados ganhem aceitação e uma aparência de legitimidade. ...

Why Do Irrational Beliefs Mimic Science? The Cultural Evolution of Pseudoscience: Cultural evolution of pseudoscience

Theoria

... Despite the numerous advantages of molecular marker technology for genetic diversity analysis, phenotypic traits are readily in the field. Phenotypic variation represents the most direct manifestation of plant genetic diversity, reflecting genotypic adaptation to the environment (Pigliucci and Kolodynska, 2006). Plant phenotypic traits are mainly controlled by heredity, and due to adaptation to different environmental conditions, their phenotypic traits have differentiation and variation, such as Sapindus L (Sun et al., 2017), Liquidambar formosana Hance (He et al., 2019), and Phoebe bourne (Hemsl.) ...

Phenotypic integration and response to stress in Arabidopsis thaliana: A path analytical approach
  • Citing Article
  • March 2006

Evolutionary Ecology Research