Mark Orr’s research while affiliated with University of Virginia and other places

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Publications (13)


Figure 1. Dampened oscillation of Rt. The values of Rt are plotted against Rt+7, where t is in days.
Figure 2. Rt vs. proportion of mask wearing 7 days later. A spiraling increase in the adoption of mask wearing can be observed in many cases as time progresses.
Figure 4. Observed proportion of mask wearing and proportion predicted by R-PVA-4 for 10 U.S. states over the first three waves of COVID-19. The top row shows the lowTrump states (5 states with the lowest proportion voting for Trump in 2016) and the bottom row shows the highTrump states (5 states with the highest proportion voting for Trump in 2016).
Figure 5. Probing the model with hypothetical values of predictors and different penalties for partial matching.
Figure 6. Observed proportion of mask wearing and proportion predicted by an R-PVA with self-efficacy and using Big 5 Personality trait data for 10 U.S. states over the first three waves of COVID-19. The top row shows lowTrump states and the bottom row shows highTrump states.

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Computational Modeling of Regional Dynamics of Pandemic Behavior using Psychologically Valid Agents
  • Preprint
  • File available

April 2024

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47 Reads

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Choh Man Teng

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Mark Orr

Regional Psychologically Valid Agents (R-PVAs) are computational models representing cognition and behavior of regional populations. R-PVAs are developed using ACT-R—a computational implementation of the Common Model of Cognition. We developed R-PVAs to model mask-wearing behavior in the U.S. over the pre-vaccination phase of COVID-19 using regionally organized demographic, psychographic, epidemiological, information diet, and behavioral data. An R-PVA using a set of five regional predictors selected by stepwise regression, a psychological self-efficacy process, and context-awareness of the effective transmission number, Rt, yields good fits to the observed proportion of the population wearing masks in 50 U.S. states [R² = 0.92]. An R-PVA based on regional Big 5 personality traits yields strong fits [R² = 0.83]. R-PVAs can be probed with combinations of population traits and time-varying context to predict behavior. R-PVAs are a novel technique to understand dynamical, nonlinear relations amongst context, traits, states, and behavior based on cognitive modeling.

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The 10-year prospectus imagined graphically shows the larger system graph illustrated on the left captured through coupled, co-evolving networks, possibly including mass media. Transfer functions (e.g., η1 and η2) govern how states associated to a different network layer (e.g., online) may influence dynamics in another network layer (e.g., physical contacts). A cognitive situation graph is illustrated in the top right, capturing dynamics at a compact level for the various agent classes present in the system network. Essential to this 10-year prospectus is the invocation of human cognitive architectures to realistically constrain mathematical models of system-level behavior.
A major component of our 10-year prospectus is to develop and design vertex functions for the GDS framework from cognitive first principles (i.e., derived from or constrained by a human cognitive architecture). The left portion above shows the development from cognitive architecture to cognitive model. The dotted-arrow represents an iterative process that is designed to vary the degree of abstraction (more abstraction means less fidelity) in the mathematical representation of an agent's cognitive model. Scaling criteria are considered in respect to the time and space complexity of computations on the graph; for large graphs with high-fidelity vertex functions, this may be a serious consideration. The mathematical frameworks for representing vertices are various and may be explored as part of the development of a GDS formalism.
A 10-year prospectus for mathematical epidemiology

June 2023

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90 Reads

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2 Citations

There is little significant work at the intersection of mathematical and computational epidemiology and detailed psychological processes, representations, and mechanisms. This is true despite general agreement in the scientific community and the general public that human behavior in its seemingly infinite variation and heterogeneity, susceptibility to bias, context, and habit is an integral if not fundamental component of what drives the dynamics of infectious disease. The COVID-19 pandemic serves as a close and poignant reminder. We offer a 10-year prospectus of kinds that centers around an unprecedented scientific approach: the integration of detailed psychological models into rigorous mathematical and computational epidemiological frameworks in a way that pushes the boundaries of both psychological science and population models of behavior.


Knowledge sharing in a dynamic, multi-level organization: an agent-based modeling approach

February 2023

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380 Reads

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2 Citations

Computational and Mathematical Organization Theory

Organizations are complex systems comprised of many dynamic and evolving interaction patterns among individuals and groups. Understanding these interactions and how patterns, such as informal structures and knowledge sharing behavior, emerge are crucial to creating effective and efficient organizations. Studying organizations as complex systems is a challenge as we must account for hierarchically nested structures, multi-level processes, and changes over time. Informal structures interact with individual attitudes to influence organizational processes such as knowledge sharing, a process vital to organizational performance and innovation. To explore such organizational dynamics, we integrate dynamic social networks, a cognitive model of attitude formation and change, and a physical environment into an agent-based model, the combination of which represents a novel way to study organizations. We use a hospital in southwest Virginia as our case study. The agents in the model are the healthcare workers within the hospital and agent movement occurs over the physical environment of the hospital. Results show that the simulated hospital is resilient to impacts from employee attrition but that communication approaches must be thought through strategically so as not to hinder knowledge sharing. For managers, this type of modeling approach can provide resource and planning guidance in regards to attrition-based strategies and communication approaches.


A computational cognitive model of behaviors and decisions that modulate pandemic transmission: Expectancy-value, attitudes, self-efficacy, and motivational intensity

January 2023

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66 Reads

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2 Citations

We present a computational cognitive model that incorporates and formalizes aspects of theories of individual-level behavior change and present simulations of COVID-19 behavioral response that modulates transmission rates. This formalization includes addressing the psychological constructs of attitudes, self-efficacy, and motivational intensity. The model yields signature phenomena that appear in the oscillating dynamics of mask wearing and the effective reproduction number, as well as the overall increase of rates of mask-wearing in response to awareness of an ongoing pandemic.


A Ten-Year Prospectus for Mathematical Epidemiology

December 2022

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24 Reads

There is little significant work at the intersection of mathematical and computational epidemiology and detailed psychological processes, representations and mechanisms. This is true despite general agreement in the scientific community and the general public that human behavior–in its seemingly infinite variation and heterogeneity, susceptibility to bias, context and habit–is an integral if not fundamental component of what drives the dynamics of infectious disease. The COVID-19 pandemic serves as a close and poignant reminder. We offer a ten-year prospectus of kinds that centers around an unprecedented scientific approach: the integration of detailed psychological models into rigorous mathematical and computational epidemiological frameworks in a way that pushes the boundaries of both psychological science and population models of behavior.


Trusty Ally or Faithless Snake: Modeling the Role of Human Memory and Expectations in Social Exchange

July 2021

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14 Reads

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2 Citations

Lecture Notes in Computer Science

Exchange is a foundational form of human interaction underlying more complex forms of cooperation and collaboration. Exchange scholars have demonstrated that both the structure of exchange relationships, and the cultural logics that govern them influence the benefits that exchange partners contribute and receive. These factors influence behavior by shaping expectations; but, the cognitive process involved in forming expectations over the course of repeated exchanges is less well understood. We introduce a cognitive model of social exchange implemented in ACT-UP, employing instance-based learning (Gonzalez et al. 2003). In this paper, we focus on how the logical structure of exchange relationships influences exchange behaviors by comparing simulation outcomes to experimental data collected by (Molm et al. 2013). We find that the cognitive model is able to replicate well the outcomes of negotiated exchanges but that reciprocal exchanges pose a greater challenge.


Mining Online Social Media to Drive Psychologically Valid Agent Models of Regional Covid-19 Mask Wearing

July 2021

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41 Reads

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4 Citations

Lecture Notes in Computer Science

Understanding how humans respond to an ongoing pandemic and interventions is crucial to monitoring and forecasting the dynamics of viral transmission. Heterogeneous response over time and geographical regions may depend on the individual beliefs and information consumption patterns of populations. To address the need for more precise and accurate epidemiological models we are researching Psychologically Valid Agent models of human responses to epidemic information and non-pharmaceutical interventions during the COVID-19 global pandemic with input drivers induced from sources including online media that provide indicators of pandemic awareness, beliefs, and attitudes.


The Architecture and Implementation of the Reciprocal Constraints Paradigm. Each row represents a level of scale (as labeled in the left-most column). Column A is notational for the degree of variety of potential types of neural processes and cognitive models that could be constructed to capture a phenomenon and the types of features in the social space (e.g., peer-network)—i.e., it captures the feature/model space of a particular implementation. Column B shows the implementation of the reciprocal constraints paradigm; each arrow represents a kind of constraint: Abstract—abstraction of neural processes to cognitive processes; Simulate—simulating social systems in which humans behavior is defined as a cognitive architecture; Constrain—the feedback signal from the accuracy of the social simulation w.r.t. to empirical measurements on human systems; and, Interpret—refinement of the selection of neural processes that are implicated in the cognitive model. The former two constraints we call upward constraints; the latter are called downward constraints. Implementation of the paradigm will require iteration between the feature/model space and the simulation of social and cognitive models. There may be potential for automation of this paradigm once it is well developed
An example (taken from Stocco (2018) with permission) of how neurobiological constraints can be incorporated in a cognitive architecture. The two panels illustrate two alternative ways to implement a forced choice task with six possible options (A through F) in ACT-R. (Left Panel) A canonical ACT-R model, in which each option A...F is associated with a single, corresponding production rule (Pick A Pick F). In this model, the expected value of the different options is encoded as the expected utility of each production rule. The utility of each rule is learned through reinforcement learning in ACT-Rs procedural module, which is associated with the basal ganglia. However, the lack of biological plausibility in ACT-Rs procedural module prevents the model from capturing the results of the original study. (Right Panel) A biologically-plausible version of the same model, in each of the original production rules is split into two opposite actions (Pick A Pick F and Dont Pick A Dont Pick F), whose utilities are learned separately. This new version abstracts the competition between the direct and indirect pathways of the basal ganglia circuit. When equipped with this biologically-plausible version of production rules, the model can successfully reproduce the results in the neuropsychological literature, as well as capture individual differences in genetics (Stocco 2018) and even correctly predict new findings (Stocco et al. 2017)
Bitcoin GitHub Community Graph. Community G7.20. This community is extracted from the larger GitHub interaction network (n = 54.1M nodes, m = 134.16M edges). Ties represent any interaction from a user to a repo—although this is a bipartite graph, the node attribute (user/repo) is not depicted, except for the identification of the BitCoin repo. Clusters were identified in two stages via repeated application of the Louvain Community detection routine (Blondel et al. 2008), where we first identify large superclusters and then clustered any with more than 50,000 nodes again to identify subclusters. Supercluster 7 is of size n = 269,264, m = 385,315, subcluster 20 has n = 11,292 m = 14,197). Layout is based on a Fruchterman–Reingold algorithm, with degree = 1 nodes (green) placed in a circle near their respective hub (tan). The Bitcoin Repo is indicated in red and offset slightly to highlight its position in the network. (Color figure online)
ACT-R memory schematic for simulating GitHub agents. See text for details
The matrix agent-based modeling platform: a distributed software environment for agent-based modeling and simulation (implemented and developed in Python). It is responsible for (i) updating and providing a system view to agents, (ii) control flow logic, (iii) orchestrating agents, (iv) message passing, where (collections of) agents are independent software processes. Agents are programming language independent. Agent developers focus on serial implementation of their algorithms
Multi-scale resolution of neural, cognitive and social systems

March 2019

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476 Reads

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11 Citations

Computational and Mathematical Organization Theory

We recently put forth a thesis, the Resolution Thesis, that suggests that cognitive science and generative social science are interdependent and should thus be mutually informative. The thesis invokes a paradigm, the reciprocal constraints paradigm, that was designed to leverage the interdependence between the social and cognitive levels of scale for the purpose of building cognitive and social simulations with better resolution. We review our thesis here, provide the current research context, address a set of issues with the thesis, and provide some parting thoughts to provoke discussion. We see this work as an initial step to motivate both social and cognitive sciences in a new direction, one that represents unity of purpose, an interdependence of theory and methods, and a call for the careful development of new approaches for understanding human social systems, broadly construed.


Multi‐Scale Resolution of Human Social Systems: A Synergistic Paradigm for Simulating Minds and Society

March 2019

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21 Reads

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3 Citations

In this chapter, we expand on our Resolution Thesis, a thesis that makes claims about the interdependence between cognitive systems (individual minds) and social systems in terms of how well we understand and simulate each. Along with the thesis comes a methodological paradigm, the Reciprocal Constraints Paradigm, in which information from the cognitive and social levels of scales constrain one another in a principled way. We work through some hypothetical examples of what the application of the Reciprocal Constraints Paradigm would look like and close by framing it as a way of moving social simulation forward in a new direction.


Fig. 1. The Architecture and Implementation of the Reciprocal Constraints Paradigm Each row represents a level of scale (as labeled in the left-most column). Column A is notational for the degree of variety of potential types of neural processes and cognitive models that could be constructed to capture a phenomenon and the types of features in the social space (e.g., peer-network)-i.e., it captures the feature/model space of a particular implementation. Column B shows the implementation of the reciprocal constraints paradigm; each arrow represents a kind of constraint: Abstract-abstraction of neural processes to cognitive processes; Simulate-simulating social systems in which humans behavior is defined as a cognitive architecture; Constrain-the feedback signal from the accuracy of the social simulation w.r.t. to empirical measurements on human systems; and, Interpret-refinement of the selection of neural processes that are implicated in the cognitive model. The former two constraints we call upward constraints; the latter are called downward constraints. Implementation of the paradigm will require iteration between the feature/model space and the simulation of social and cognitive models. There may be potential for automation of this paradigm once it is well developed. 
Fig. 2. An example (taken from [8] with permission) of how neurobiological constraints can be incorporated in a cognitive architecture. The two panels illustrate two alternative ways to implement a forced choice task with six possible options (A through F) in ACT-R. (Left Panel) A canonical ACT-R model, in which each option A...F is associated with a single, corresponding production rule (Pick A Pick F). In this model, the expected value of the different options is encoded as the expected utility of each production rule. The utility of each rule is learned through reinforcement learning in ACT-Rs procedural module, which is associated with the basal ganglia. However, the lack of biological plausibility in ACT-Rs procedural module prevents the model from capturing the results of the original study. (Right Panel) A biologicallyplausible version of the same model, in each of the original production rules is split into two opposite actions (Pick A Pick F and Dont Pick A Dont Pick F), whose utilities are learned separately. This new version abstracts the competition between the direct and indirect pathways of the basal ganglia circuit. When equipped with this biologically-plausible version of production rules, the model can successfully reproduce the results in the neuropsychological literature, as well as capture individual differences in genetics[8] and even correctly predict new findings[9]. 
Multi-scale Resolution of Cognitive Architectures: A Paradigm for Simulating Minds and Society

June 2018

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510 Reads

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8 Citations

Lecture Notes in Computer Science

We put forth a thesis, the Resolution Thesis, that suggests that cognitive science and generative social science are interdependent and should thus be mutually informative. The thesis invokes a paradigm, the reciprocal constraints paradigm, that was designed to leverage the interdependence between the social and cognitive levels of scale for the purpose of building cognitive and social simulations with better resolution. In addition to explaining our thesis, we provide the current research context, a set of issues with the thesis and some parting thoughts to provoke discussion. We see this work as an initial step to motivate both social and cognitive sciences in a new direction, one that represents some unity of purpose and interdependence of theory and methods.


Citations (11)


... Recent studies have pointed out that psychological models should be an intrinsic part of the mathematical framework in order to understand how, given a disease, human behavior can lead to its spread. This interdisciplinarity is important in work striving to improve the accuracy of models so that there could be useful public health strategies [4]. ...

Reference:

A Century of Mathematical Epidemiology: A Bibliometric Analysis and Visualization of Research Trends
A 10-year prospectus for mathematical epidemiology

... Very few studies investigate the dynamics and spatial contexts in knowledge-exchange interactions while considering individual attributes, their previous behaviours and changes in the organizational environment. One of the few examples is Pires et al. (2024), who used an agent-based simulation that included both spatial and temporal factors and behavioural rules that individuals followed. They found that knowledge-sharing in the simulated hospital depended on individuals' physical movement and changed over time. ...

Knowledge sharing in a dynamic, multi-level organization: an agent-based modeling approach

Computational and Mathematical Organization Theory

... At the beginning of a pandemic, there is a rapid increase in Rt, followed by an asymmetric decline, followed by oscillations around Rt = 1. As noted previously, 7,8 this oscillation is similar to that produced by a Proportional-Integral-Derivative control system in which a controlling intervention (e.g., mask wearing) occurs in proportional response to the state of the system (e.g., Rt), although there may be lags between the awareness of the system state and the response, and between the response and effecting a change. The lags may occur (for instance) because of the pathogen incubation period, news time cycles, or the observation of local social conditions. ...

A computational cognitive model of behaviors and decisions that modulate pandemic transmission: Expectancy-value, attitudes, self-efficacy, and motivational intensity

... Thus, they can be used to optimize behavior-change interventions, both in design or as an online surveillance aid. For example, our recent work has integrated cognitive modeling using ACT-R with network simulations of population responses to public health messages of nonpharmaceutical interventions and their impact on epidemiological spread (Pirolli et al., 2020(Pirolli et al., , 2021; another similar example is the modeling of the effects of (in)coherence of messaging and sources on credibility (Liao et al., 2012). ...

Mining Online Social Media to Drive Psychologically Valid Agent Models of Regional Covid-19 Mask Wearing
  • Citing Chapter
  • July 2021

Lecture Notes in Computer Science

... Second, it provides a test-bed for the effects of intervention/prevention efforts (e.g., messaging, or temporal effects of mitigations) in silico. ACT-R is a computational theory, and, is naturally extendable to small-scale social simulations of groups for testing in social contexts (Morgan et al., 2021). Third, it is a general approach, unified by the ACT-R cognitive architecture (or even the Common Model of Cognition), that can span behavioral domains (e.g., chronic diseases such as cancer and obesity and infectious disease such as HIV or COVID-19) and span social contexts and differences in built environments). ...

Trusty Ally or Faithless Snake: Modeling the Role of Human Memory and Expectations in Social Exchange
  • Citing Chapter
  • July 2021

Lecture Notes in Computer Science

... Finally, it can form the basis for the behavior models for large or at-scale simulations of infectious disease and mitigation. Agentbased modeling has been integrated with ACT-R in several contexts (Bhattacharya et al., 2019;Orr, 2019;Orr et al., 2021). ...

Multi‐Scale Resolution of Human Social Systems: A Synergistic Paradigm for Simulating Minds and Society
  • Citing Chapter
  • March 2019

... It is unknown to what degree these models are relevant for real-world behaviors and decisions that are social in nature and relevant for infectious disease dynamics. There exist sporadic calls in the public health literature for the integration of behavior change theory with computational psychology in public health (Orr et al., 2013(Orr et al., , 2019Orr and Plaut, 2014;Pirolli, 2016;) but these suffer from similar issues to those found in the social psychological literature. A more domain-general approach is needed. ...

Multi-scale resolution of neural, cognitive and social systems

Computational and Mathematical Organization Theory

... More broadly, the ability for AI to socially reason as humans do is a fundamental underpinning of all socially assistive AI such as social robots (Winkle et al 2020;Kennedy et al 2009). Furthermore, there has been a shift in recent years in scholars beginning to view cognitive science and generative social science as interdependent fields (Orr et al 2018), and many models have been advanced by using more complex and realistic cognitive architectures for agents (Epstein 2014;Gunaratne et al 2021;Baggio and Janssen 2013;Schlüter et al 2017;Miranda 2022). Thus, improving these cognitive architectures has consequences for, for example, detecting and preventing threats to public safety (Demiris 2007) such as the spread of disinformation on social media Rajabi et al 2020), or informing policy to better deal with the effects of the global climate crisis (Freeman et al 2020;Elsawah et al 2020). ...

Multi-scale Resolution of Cognitive Architectures: A Paradigm for Simulating Minds and Society

Lecture Notes in Computer Science

... As a result, the problems caused by network security are getting more and more attention. Therefore, network logs that record network security and user events have become more and more important [3][4] . Because the information in the log file allows us to find out the reasons for incident handling, network intrusion systems, system resource monitoring, and helping to restore the system, it is of great value [4] . ...

A New Lens on High School Dropout: Use of Correspondence Analysis and the Statewide Longitudinal Data System

The American Statistician

... Therefore, research on healthcare data quality should not be limited to specific domain knowledge areas but can be conducted as a joint study by experts with knowledge in various fields such as medicine, data science, statistics, and information technology. A creative approach to data quality necessitates effective interdisciplinary collaboration among experts from various fields [15]. ...

The Evolution of Data Quality: Understanding the Transdisciplinary Origins of Data Quality Concepts and Approaches

Annual Review of Statistics and Its Application