Lulu Ding’s research while affiliated with Zhejiang Sci-Tech University and other places

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Publications (3)


Corrigendum: Comparative plastome analyses and evolutionary relationships of 25 East Asian species within the medicinal plant genus Scrophularia (Scrophulariaceae)
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January 2025

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19 Reads

Xia Wang

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Lei Guo

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Lulu Ding

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[...]

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Circular gene map of Scrophularia plastomes. The map illustrates the characteristic quadruple structure of the plastome, where the blue regions represent the IR regions, and the gray regions represent the LSC and SSC regions. The transcription directions for the inner and outer genes are clockwise and anticlockwise, respectively. The black, uneven circle in the middle represents the GC content along the genome. The functional classification of the genes is shown in the left bottom corner.
Quantitative analysis of four types of repeats in 25 East Asian Scrophularia plastomes.
(A) Type and number of SSRs in 25 East Asian Scrophularia plastomes. (B) SSRs locus distribution (including LSC, SSC, IRa and IRb) of East Asian Scrophularia plastomes.
Heatmap of Relative Synonymous Codon Usage (RSCU) values for 25 East Asian Scrophularia plastomes.
The contraction and expansion diagram of the IR region in the plastomes. The positions of LSC, IR, and SSC junctions were compared among 25 Scrophularia species. JLB stands for the junction between the long single copy and reverse repeat (LSC/IRb), JSB stands for the junction between reverse repeat and short single copy (IRb/SSC), JSA stands for the junction between short single copy and forward repeat (SSC/IRa), and JLA stands for the junction between forward repeat and long single copy (IRa/LSC).

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Comparative plastome analyses and evolutionary relationships of 25 East Asian species within the medicinal plant genus Scrophularia (Scrophulariaceae)

September 2024

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123 Reads

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3 Citations

Backgroud Scrophularia L., a genus of the Scrophulariaceae, is a group of important medicinal plants used for eliminating heat and detoxifying. East Asia has an abundance of potentially medicinal Scrophularia species, and it serves as a secondary diversity center of the genus. However, the genomic resources available for germplasm identification and pharmaceutical exploration of East Asian Scrophularia are insufficient, hindering its commercial and industrial development. Additionally, the interspecific relationships of most East Asian Scrophularia species remain unclear. Methods In this study, we sequenced the leaves of 25 East Asian species of the genus Scrophularia, assembled and annotated the complete chloroplast genomes, and subsequently performed comparative and phylogenetic analyses on these genomes. Results and discussion The conserved plastome length of these 25 species ranged from 151,582 bp to 153,239 bp, containing a total of 132 coding genes, including 18 duplicated genes and 114 unique genes. Through genome alignment of these 25 species, 38-53 repeated sequences and 7 shared SSRs were identified, along with regions with high nucleotide polymorphism (Pi), which could potentially serve as molecular markers for species identification. The genome structure, gene content, and arrangement showed conservation, while variations were observed in the IR boundary regions and IGS. Phylogenetic inferences based on whole plastomes or on coding sequences (CDS) only yielded congruent results. We categorized the 25 East Asian Scrophularia species into six distinct clades and further explored their interspecies relationships using morphological characteristics, such as flower color, the relative position of stamens and corolla, and plant height. This could lay a genetic basis for future resource development of Scrophularia in East Asia.


Figure 2. Anatomical differences between (A-C) unbolting and (D-F) bolting plants of K. praeruptora at different growth stages [23]. The unbolting rootss parenchyma cells, initially undifferentiated, appear large and loose (A). The pericycle differentiates into conduits, woody tissue, and wood rays (B). Woody tissue parenchyma cells are mildly fibrose, and secretion ducts increase (C). Bolting plants show earlier pericycle differentiation and woody parenchyma fibrosis (D). Pericycle shrinks, cracks increase, secretion ducts decrease, and fibrosis intensifies, leading to pith formation in later stages (E,F).
Figure 4. Cont.
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A Review on the Morphology, Cultivation, Identification, Phytochemistry, and Pharmacology of Kitagawia praeruptora (Dunn) Pimenov

December 2023

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71 Reads

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1 Citation

Kitagawia praeruptora (Dunn) Pimenov, commonly known as Qianhu in China, is a widely used folk Chinese herbal medicine. This article reviews its botanical traits, ethnopharmacology, cultivation techniques, identification, phytochemical compositions, and pharmacological effects. Over 70 coumarin compounds, including simple coumarins, pyranocoumarins, and furanocoumarins, have been isolated within this plant. Additionally, K. praeruptora contains other components such as flavonoids, fatty acids, benzoic acids, and sterols. This information highlights the importance of utilizing active ingredients and excavating pharmacological effects. With its remarkable versatility, K. praeruptora exhibits a wide range of pharmacological effects. It has been found to possess expectorant and bronchodilator properties, cardiovascular protection, antimicrobial and antioxidant activities, anti-tumor effects, and even antidiabetic properties. It is recommended to focus on the development of new drugs that leverage the active ingredients of K. praeruptora and explore its potential for new clinical applications and holistic utilization.

Citations (2)


... To address these limitations, advanced molecular breeding approaches have emerged as a critical solution [13,14]. Among these, mitogenome engineering offers unique advantages for clonally propagated species like rosemary [15]. ...

Reference:

Decoding the mitogenome of rosemary (Salvia rosmarinus): insights into genome evolution, structural dynamics and prospects for mitochondrial engineering
Comparative plastome analyses and evolutionary relationships of 25 East Asian species within the medicinal plant genus Scrophularia (Scrophulariaceae)

... The chloroplast genome serves as a vital resource for investigating plant evolution, systematic development, and genetic diversity [35][36][37][38]. The Amaranthus chloroplast genomes exhibit a highly conserved structure, and might reflect evolutionary constraints that maintain essential physiological functions. ...

A Review on the Morphology, Cultivation, Identification, Phytochemistry, and Pharmacology of Kitagawia praeruptora (Dunn) Pimenov