Luise Quoss’s research while affiliated with Martin Luther University Halle-Wittenberg and other places

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Publications (10)


Sampling scheme illustration for two hypothetical species
Open and closed dots symbolise the hypothetical distributions of individuals of two species. The red arrows indicate the location of the nearest individual to the focal point, marked by a cross in the centre of the figure. The location of the closest individual provides the information to construct the SAR, with the circles identifying the corresponding areas. The spatial distributions exemplify two scenarios: one where a species’ range encompasses the focal point (closed dots) and another where it does not (open dots).
A triphasic nested species-area relationship (SAR)
a SAR obtained with simulations assuming 15,000 species with individuals distributed according to bivariate normal distributions with scale parameter σp = 1 and randomly uniform centres. The black dots correspond to one realisation where we sampled 1000 individuals from each species and identified the minimum. This procedure was repeated N = 1000 times, from which the parameters of the generalised extreme value distribution were estimated and the red line was then obtained using expression (2). The dashed blue lines were obtained by fitting the SAR using linear regressions for small, intermediate, and large areas. The inset shows the SAR obtained from simulations for small area sizes only, assuming σp = 1, and the centres uniformly randomly distributed within a radius region equal to 2 (arbitrary units). b The ratio υp/σp\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$${\upsilon }_{p}/{\sigma }_{p}$$\end{document} of the parameters of the (parent) Rice distribution for each black point in plot a, as a function of the area. The horizontal dashed lines correspond to the ratios υp/σp\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$${\upsilon }_{p}/{\sigma }_{p}$$\end{document} = 2 and 4. Species contributing to Phase I primarily have ratios υpσp<2\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$\frac{{\upsilon }_{p}}{{\sigma }_{p}} < 2$$\end{document}, those contributing to Phase II have 2<υpσp<4\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$2 < \frac{{\upsilon }_{p}}{{\sigma }_{p}} < 4$$\end{document} and those contributing to Phase 3 have υpσp>4\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$\frac{{\upsilon }_{p}}{{\sigma }_{p}} > 4$$\end{document}.
The estimated parameters of the generalised extreme value distribution (GEV), as a function of υp, the location parameter of the (parent) Rice distribution
a The location parameter of the GEV, μ̂\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$\hat{\mu }$$\end{document}. b A zoom in of μ̂\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$\hat{\mu }$$\end{document} in double logarithm axes for the values of υp associated with Phase II. c The shape parameter, ξ̂\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$\hat{\xi }$$\end{document}. d the scale parameter, σ̂\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$\hat{\sigma }$$\end{document}. The red dashed lines in plots (c, d) correspond to the mean of the values for υp > 5, upper line, and for υp < 1, lower line. Recall that υp is also the distance of the centre of the bivariate normal distribution of the individuals’ locations to the focal point.
A visual summary illustrating the relationship between the location of a species range relative to the focal point and its contribution to a phase of the SAR
The top row comprises three plots exemplifying bivariate normal distributions at varying distances from the focal point, represented by the red ‘x’. a The distribution is centred on the focal point; b The focal point falls within a distance of the centre of distribution where 2<σp<4\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$2 < {\sigma }_{p} < 4$$\end{document}, where σp2\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$${\sigma }_{p}^{2}$$\end{document} is the variance; c The focal point is situated at a distance larger than σp>4\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$${\sigma }_{p} > 4$$\end{document} (refer also to Fig. 1). d The black curves illustrate the corresponding distributions of distances: a Rayleigh distribution for the distribution of plot (a), and Rice distributions for the distributions of plots (b, c). The normal distribution serves as a good approximation for the Rice distribution when the location parameter is significantly larger than its scale parameter (distribution on (c)). The red curves represent the respective limiting distributions of the minima: Weibull distributions for the Rayleigh and Rice distributions, and a Gumbel-like distribution when the Rice becomes normal-like. Note that the distributions are not drawn to scale.
Empirical GBIF SARs alongside corresponding SP predictions
a, b SARs for amphibians and for birds from Australia (AU). c, d SARs for amphibians and for birds from North America (NA). The grey curves in the background represent SARs obtained from 200 randomly located focal points, while the black dots indicate a mean SAR (see ‘Methods’ for details). The horizontal red lines represent the number of species predicted at the transition between Phases I and II, SP(I–II), and the horizontal blue lines represent the predicted number between Phases II and III, SP(II–III).
Modelling the species-area relationship using extreme value theory
  • Article
  • Full-text available

April 2025

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177 Reads

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M. Manuela Neves

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Luise Quoss

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[...]

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The nested species-area relationship, obtained by counting species in increasingly larger areas in a nested fashion, exhibits robust and recurring qualitative and quantitative patterns. When plotted in double logarithmic scales it shows three phases: rapid species increase at small areas, slower growth at intermediate scales, and faster rise at large scales. Despite its significance, the theoretical foundations of this pattern remain incompletely understood. Here, we develop a theory for the species-area relationship using extreme value theory, and show that the species-area relationship is a mixture of the distributions of minimum distances to a starting sampling focal point for each individual species. A key insight of our study is that each phase is determined by the geographical distributions of the species, i.e., their ranges, relative to the focal point, enabling us to develop a formula for estimating the number of species at phase transitions. We test our approach by comparing empirical species-area relationships for different continents and taxa with our predictions using Global Biodiversity Information Facility data. Although a SAR reflects the underlying biological attributes of the constituent species, our interpretations and use of the extreme value theory are general and can be widely applicable to systems with similar spatial features.

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Global trends and scenarios for terrestrial biodiversity and ecosystem services from 1900 to 2050

April 2024

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1,397 Reads

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80 Citations

Science

Based on an extensive model intercomparison, we assessed trends in biodiversity and ecosystem services from historical reconstructions and future scenarios of land-use and climate change. During the 20th century, biodiversity declined globally by 2 to 11%, as estimated by a range of indicators. Provisioning ecosystem services increased several fold, and regulating services decreased moderately. Going forward, policies toward sustainability have the potential to slow biodiversity loss resulting from land-use change and the demand for provisioning services while reducing or reversing declines in regulating services. However, negative impacts on biodiversity due to climate change appear poised to increase, particularly in the higher-emissions scenarios. Our assessment identifies remaining modeling uncertainties but also robustly shows that renewed policy efforts are needed to meet the goals of the Convention on Biological Diversity.


Fig. 2. Spatial distribution of mining and ape density. Bivariate choropleth showing the relationship between mining density (using 50-km buffers around mining locations) and ape density in (A) West Africa (operational = 18.4%; preoperational = 81.6%), in (B) central Africa (operational = 8.3%; preoperational = 91.7%), and in (C) east Africa (operational = 12.2%; preoperational = 87.8%). each color change indicates a 20% quintile change in mining and ape density. lower bounds for both mining and ape density are indicated in the color matrix.
Total and proportional overlap between ape density distribution and mining areas with 10-and 50-km buffers in West, Central, and East Africa.
Threat of mining to African great apes

April 2024

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270 Reads

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7 Citations

Science Advances

The rapid growth of clean energy technologies is driving a rising demand for critical minerals. In 2022 at the 15th Conference of the Parties to the Convention on Biological Diversity (COP15), seven major economies formed an alliance to enhance the sustainability of mining these essential decarbonization minerals. However, there is a scarcity of studies assessing the threat of mining to global biodiversity. By integrating a global mining dataset with great ape density distribution, we estimated the number of African great apes that spatially coincided with industrial mining projects. We show that up to one-third of Africa’s great ape population faces mining-related risks. In West Africa in particular, numerous mining areas overlap with fragmented ape habitats, often in high-density ape regions. For 97% of mining areas, no ape survey data are available, underscoring the importance of increased accessibility to environmental data within the mining sector to facilitate research into the complex interactions between mining, climate, biodiversity, and sustainability.


Identifying critical vegetation types for biodiversity conservation in the Americas

February 2024

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160 Reads

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2 Citations

Global Ecology and Conservation

The Americas contain highly biodiverse yet vulnerable ecosystems, with many threatened species inadequately protected. Finer-scale, localized habitat assessments are crucial for effective conservation planning, but continental-scale high-resolution vegetation maps remain limited. This study addresses this gap by identifying critical vegetation types across the Americas using the standardized framework of the International Vegetation Classification (IVC) system at the macrogroup level, representing the finest vegetation classification available across the region, as well as the highest-resolution Area of Habitat (AOH) maps currently available for birds and mammals. By combining these high-resolution IVC macrogroup maps with detailed AOH maps, we highlight at-risk vegetation types based on 1) threatened and macrogroup-associated species (species that have at least 50% of their AOH in one macrogroup), 2) current protection levels, and 3) projected threats from land use changes, and 4) develop a conservation value index (CVI) that accounts for all these factors. The results highlighted the remarkable diversity of high conservation value macrogroups across the Americas, emphasizing their significance in regions such as the Andes, montane Mesoamerica, the Caribbean, Brazil's Cerrado, and the Atlantic Forest. Among the highest-scoring macrogroups, the Northern Andean Montane & Upper Montane Humid Forest emerged as critically important, harboring a high number of threatened and macrogroup-associated species. Other macrogroups of immediate conservation concern include the Brazilian Atlantic Montane Humid Forest, Pacific Mesoamerican Seasonal Dry Forest, Caribbean Lowland Humid Forest, and Central Midwest Oak Forest, Woodland and Savanna. However, the study revealed that nearly three-quarters of the over 300 macrogroups in the Americas fall below the global target of 30% protection. Notably, a fifth of all species were macrogroup-associated species, including over 40% of threatened species. Our findings emphasize the need for targeted conservation strategies that consider finer-scale habitat classifications and paired with high-quality species distribution data to guide conservation strategies for biodiversity across the Americas.



Identificación de tipos de vegetación críticos para la conservación de la biodiversidad en las Américas

November 2023

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218 Reads

The Americas contain highly biodiverse yet vulnerable ecosystems, with many threatened species inadequately protected. Finer-scale, localized habitat assessments are crucial for effective conservation planning, but continental-scale high-resolution vegetation maps remain limited. This study addresses this gap by identifying critical vegetation types across the Americas using the standardized framework of the International Vegetation Classification (IVC) system at the macrogroup level, representing the finest vegetation classification available across the region, as well as the highest-resolution Area of Habitat (AOH) maps currently available. By combining these high-resolution IVC macrogroup maps with detailed AOH maps, we highlight at-risk vegetation types based on 1) threatened and macrogroup-associated species (species that have at least 50% of their AOH in one macrogroup), 2) current protection levels, and 3) projected threats from land use changes, and 4) develop a conservation value index (CVI) that accounts for all these factors. The results highlighted the remarkable diversity of high conservation value macrogroups across the Americas, emphasizing their significance in regions such as the Andes, montane Mesoamerica, the Caribbean, Brazil's Cerrado, and the Atlantic Forest. Among the highest-scoring macrogroups, the Northern Andean Montane & Upper Montane Humid Forest emerged as critically important, harboring a high number of threatened and macrogroup-associated species. Other macrogroups of immediate conservation concern include the Brazilian Atlantic Montane Humid Forest, Pacific Mesoamerican Seasonal Dry Forest, Caribbean Lowland Humid Forest, and Central Midwest Oak Forest, Woodland and Savanna. However, the study revealed that nearly three-quarters of the over 300 macrogroups in the Americas fall below the global target of 30% protection. Notably, a fifth of all species were macrogroup-associated species, including over 40% of threatened species. Our findings emphasize the need for targeted conservation strategies that consider finer-scale habitat classifications and paired with high-quality species distribution data to guide conservation strategies for biodiversity across the Americas.


Total-and proportional overlap between ape density distribution and mining areas with 10 km and 50 km buffers in West-, central-, and East Africa.
Name, description, spatial resolution, spatial extent, and source of datasets used in this analysis.
Threat of mining to African great apes

October 2023

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357 Reads

The rapid growth of clean energy technologies is driving a rising demand for critical minerals. In 2022 at the UN Biodiversity Conference (COP 15), seven major economies formed an alliance to enhance the sustainability of mining these essential decarbonization minerals. However, there is a scarcity of studies assessing the threat of mining to global biodiversity. By integrating a global mining dataset with ape density distribution estimates, we explored the potential negative impact of industrial mining on African great apes. Our findings reveal that up to one-third of Africa’s great ape population faces mining-related risks. This is especially pronounced in West Africa, where numerous mining areas overlap with fragmented ape habitats, often occurring in high-density ape regions. For 97% of mining areas, no ape survey data are available, underscoring the importance of increased accessibility to environmental data within the mining sector to facilitate research into the complex interactions between mining, climate, biodiversity and sustainability. Teaser Mining for clean energy minerals could put one-third of Africa’s ape population at risk.


EBV Data Portal API

July 2023

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36 Reads

The EBV Data Portal API is specifically designed for the machine-readable integration, sharing, and utilization of EBV datasets and currently supports only GET requests in its initial version. The ebv_download function of the R package utilizes this REST API to download the EBV datasets. The API is accessible via the URL https://portal.geobon.org/api/swagger-ui/


Cataloging Essential Biodiversity Variables with the EBV Data Portal

August 2022

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112 Reads

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2 Citations

Biodiversity Information Science and Standards

Essential Biodiversity Variables (EBVs) are used to monitor the status and trends in biodiversity at multiple spatiotemporal scales. These provide an abstraction level between raw biodiversity observations and indicators, enabling better access to policy-relevant biodiversity information. Furthermore, the EBV vision aims to support detection of critical change, among other things, with easy to use tools and dashboards accessible to a variety of users and stakeholders. We present the EBV Data Portal, a platform for distributing and visualizing EBV datasets. It contains a geographic cataloging system that supports a large number of spatiotemporal and EBV specific attributes and enables their discoverability. To facilitate user interaction, it offers a web-based interface where users can upload, discover and share essential biodiversity spatiotemporal data through intuitive interaction with cataloging and visualization tools. Using the EBV Catalog, the user can explore the characteristics of the data based on the definition of the EBV Cube standard*1. The Catalog also allows browsing of the description of the metadata in the specifications of the Attribute Convention for Data Discovery (ACDD) and in the Ecological Metadata Language (EML) vocabulary. This enables easy interoperability with other metadata catalogs. An example application is the calculation of summary statistics for selected countries. Using the EBV Data Portal, users can select EBV datasets and calculate basic biodiversity change metrics from spatiotemporal subsets and conveniently visualize complex, multidimensional biodiversity datasets. These visualization and analysis tools of the EBV Data Portal are a first step towards an EBV-based dashboard for biodiversity analyses.


visualization of the EBV cube (Mahecha 2017, License CC BY 4.0).
EBV netCDF hierarchical data structure: (a) shows the structure of a minimal dataset and (b) shows the structure of an exhaustive dataset.
EBV netCDF Structure of the Global habitat availability for mammals dataset by Daniele Baisero (License CC BY 4.0).
Blue elements are variables, green elements represent groups, attributes are displayed in black and dimension are red.
Building Essential Biodiversity Variable netCDFs with the ebvcube R Package

August 2022

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283 Reads

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3 Citations

Biodiversity Information Science and Standards

The concept of Essential Biodiversity Variables (EBVs) was conceived to study, report, and manage biodiversity change. The EBV netCDF structure was developed in order to support publication and interoperability of biodiversity data. This standard is based on the Network Common Data Format (netCDF). Additionally, it follows the Climate and Forecast Conventions (CF, version 1.8) and the Attribute Convention for Data Discovery (ACDD, version 1.3). The standard allows several datacubes per netCDF file (see Fig. 1). These cubes have four dimensions: longitude, latitude, time and entity, whereby the last dimension can, for example, encompass different species or groups of species, ecosystem types or other aspects. The usage of hierarchical groups enables the coexistence of multiple EBV cubes (see Fig. 2). The first level (netCDF group) are scenarios, e.g., the modelling for different Shared Socioeconomic Pathways (SSP) scenarios. The second level (netCDF group) are metrics, e.g., the percentage of protected area per pixel and its proportional loss over a certain time span per pixel. All metrics are repeated per scenario, if any are present. The result is a rather complex raster dataset (see example dataset in Fig. 3). This is where the ebvcube R package comes into play. This R package enables scientists to create their own netCDFs in the EBV cube standard. Its functionality covers the creation, opening/reading and visualizing the EBV netCDFs. The ebvcube package is part of the overall EBV infrastructure and works together with the EBV Data Portal. Users can work with the downloaded EBV netCDFs or upload their own EBV netCDFs to the portal. Generally, the package aims to condense the output for the users and assist in the understanding of the file structure to overcome the complexity. The output is reduced to the necessary information, e.g., not displaying coordinate variables or any technical attributes. Moreover, functionality for a quick data exploration is implemented.

Citations (5)


... Land transformation degrades the biophysical quality of land, while occupation through human activities or infrastructure presence impedes ecosystem recovery . These processes have caused a 0.22-1.1 % species loss per decade, resulting in 58 % of global terrestrial areas falling below the 90 % threshold of the precautionary Biodiversity Intactness Index (BII) -a metric that reflect human induced changes in population abundance relative to pre-industrial levels and represents the safe planetary boundary for BD (Newbold et al., 2016;Pereira et al., 2024). ...

Reference:

Integrating biodiversity and ecosystem services in land use change assessment through sustainability indicator
Global trends and scenarios for terrestrial biodiversity and ecosystem services from 1900 to 2050
  • Citing Article
  • April 2024

Science

... The classification of mining threats by the IUCN includes many dimensions of impacts that are not accurately represented by the area of a mine. For example, the IUCN includes pressures from the exploration and discovery phases, which are known to impact biodiversity far from where the project development may occur (Junker et al. 2024). Such pressures, often in the form of noise pollution, removal of vegetation, blasting and drilling, can be identified as impacts to biodiversity long before a mining area can be identified (which requires it to be in the extraction or processing phases, Maus et al. 2022). ...

Threat of mining to African great apes

Science Advances

... Por exemplo, M. brauna é uma espécie heliófita, cujas sementes germinam e as plântulas sobrevivem apenas na presença de luz de clareiras (Flora & Funga, 2024) A maioria das espécies registradas nos fragmentos de FE da bacia do rio Catolé são nativas do Brasil. Adicionalmente, quase um quinto das espécies são endêmicas da Mata Atlântica, uma das florestas tropicais mais ricas em diversidade de espécies e ameaçadas do planeta (Martini et al., 2007;Schulte et al., 2024). Estimativas apontam que 80% da Mata Atlântica possuem menos de 50 ha, e que estes pequenos fragmentos possuem baixa resiliência e são mais impactados por perturbações antrópicas como corte seletivo e raso (SOS Mata Atlântica & INPE, 2018;Barreto et al., 2022). ...

Identifying critical vegetation types for biodiversity conservation in the Americas

Global Ecology and Conservation

... services to support biodiversity assessments based on EBV datasets, which are time series of spatial biodiversity datasets in raster format produced from the integration of remote sensing and in situ data, via the EBV Data Portal -REST API developed for machine-readable access to the datasets new data and metadata standard EBV-Cube (Quoß et al., 2022) -R package ebvcube 301 ...

Building Essential Biodiversity Variable netCDFs with the ebvcube R Package

Biodiversity Information Science and Standards

... This EBV directly supports one of the headline indicators of the GBF, the proportion of populations within species with an effective population size > 500 (Mastretta-Yanes et al. 2024). To support the production of EBVs, GEO BON created the EBV data portal (Langer et al. 2022) which hosts processed raster layers that can be used for EBV estimation and ultimately the calculation of indicators. ...

Cataloging Essential Biodiversity Variables with the EBV Data Portal

Biodiversity Information Science and Standards