Loki Natarajan’s research while affiliated with University of California, San Diego and other places

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Publications (323)


Fig. 1. Flow chart of participants included in the present study and final numbers for intervention and control groups.
Fig. 2. Convex hulls (km (Miller et al., 2022)) derived from the total GPS points and PA-related GPS points between time points by intervention group, ADI score of home census tract, and demographic characteristics.
Fig. 3. Conditional exposure estimates and 95 % confidence intervals for timepoints (Baseline as T1; 6 month as T2), from the mixed effects linear regression models.
Descriptive statistics for sample participants.
Average daily percent of total time in PA (cpm ≥760) spent in three life-space domains (home, neighborhood, beyond neighborhood) at baseline compared to 6-months by participant characteristics.

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Changes in activity spaces, life spaces, and exposures to physical activity-promoting environments among women with overweight or obesity
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May 2025

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Health & Place

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Metabolome Alterations Associated with Three-Month Sitting-Time Reduction Among Sedentary Postmenopausal Latinas with Cardiometabolic Disease Risk

January 2025

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25 Reads

Background: Incidence of cardiometabolic disease among U.S. Hispanics/Latinos is higher than in non-Hispanic Whites. Prolonged sitting duration is prevalent in older adults, and compounded with menopause, greatly increases cardiometabolic risk in postmenopausal women. Metabolomic analyses of interventions to reduce sitting are lacking and mechanistic understanding of health-promoting behavior change in postmenopausal Latinas is needed. Methods: To address this knowledge gap, an exploratory analysis investigated the plasma metabolome impact of a 12-week increased standing intervention among sedentary postmenopausal Latinas with overweight or obesity. From a parent-randomized controlled trial, a subset of Best Responders (n = 43) was selected using parameters of highest mean change in sitting bout duration and total sitting time; baseline variable-Matched Controls (n = 43) were selected using random forest modeling. Targeted LC-MS/MS analysis of archived baseline and 12-week plasma samples was conducted. Metabolite change was determined using a covariate-controlled general linear model and multivariate testing was performed. A false discovery rate correction was applied to all analyses. Results: Best Responders significantly changed time sitting (−110.0 ± 11.0 min; −21%), standing (104.6 ± 10.1 min; 40%), and sitting in bouts >30 min (−102.3 ± 13.9 min; −35%) compared to Matched Controls (7.1 ± 9.8 min, −7.8 ± 9.0 min, and −4.6 ± 12.7 min, respectively; all p < 0.001). Twelve-week metabolite change was significantly different between the two groups for 24 metabolites (FDR < 0.05). These were primarily related to amino acid metabolism, improved blood flow, and ATP production. Enzyme enrichment analysis predicted significant changes regulating glutamate, histidine, phenylalanine, and mitochondrial short-chain fatty acid catabolism. Pathway analysis showed significant intervention effects on glutamate metabolism and phenylalanine, tyrosine, and tryptophan biosynthesis, potentially indicating reduced cardiometabolic disease risk. Conclusions: Replacing nearly two hours of daily sitting time with standing and reduced prolonged sitting bouts significantly improved metabolomic profiles associated with cardiometabolic risk among postmenopausal Latinas.


Proportion of participants meeting each LS7 component in ideal, intermediate, and poor CVH categories
Multivariable linear regression results for individual LS7 components (modeled separately) and associations with total PQoL and domains (β (95% CI)). Reference category for each health behavior or factor is poor. Models were adjusted for age, Hispanic/Latino ethnicity, sex, income, education, and depression
Association between cardiovascular health and perceived quality of life in ethnically diverse adults: insights from the Community of Mine study using the American Heart Association’s Life’s Simple 7

December 2024

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10 Reads

Quality of Life Research

Purpose The association between cardiovascular health (CVH) with perceived quality of life (PQoL) and variations by sex and Hispanic ethnicity is not well understood. Methods This study included 583 participants (42% Hispanic, 56% female, mean age 59 years). Linear regression modeled the covariate-adjusted associations between CVH, using the combined 7 components of Life’s Simple 7 (LS7; ideal and intermediate, compared to poor), and PQoL (total and physical, social, and cognitive health domains). For individual LS7 components, we assessed effect modification by sex and Hispanic ethnicity. Results Compared to individuals with poor CVH, those with intermediate (β [95% CI] = 0.22 [0.09, 0.35]) and ideal (β [95% CI] = 0.22 [0.08, 0.36]) CVH had higher overall PQoL. This effect was dominated by the physical PQoL domain. Of LS7 components, ideal body mass index (BMI) (β [95% CI] = 0.17 [0.03, 0.31]) and physical activity (β [95% CI] = 0.26 [0.12, 0.40]) were associated with overall PQoL. Ideal diet (β [95% CI] = 0.32 [0.08, 0.56]) and fasting plasma glucose (β [95% CI] = 0.32 [0.06, 0.58]) were associated with the physical PQoL domain. A higher PQoL score was associated with intermediate BMI in women, and physical PQoL was associated with smoking for women. A BMI*Hispanic interaction resulted in larger associations between intermediate/ideal BMI and physical PQoL in non-Hispanics. Conclusion Ideal or intermediate CVH health factors and health behaviors were associated with higher PQoL. Sex and ethnicity differences suggest that perceived quality of life is associated with BMI for women and non-Hispanics.



Multilevel Longitudinal Functional Principal Component Model

September 2024

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1 Citation

Statistics in Medicine

Sensor devices, such as accelerometers, are widely used for measuring physical activity (PA). These devices provide outputs at fine granularity (e.g., 10–100 Hz or minute‐level), which while providing rich data on activity patterns, also pose computational challenges with multilevel densely sampled data, resulting in PA records that are measured continuously across multiple days and visits. On the other hand, a scalar health outcome (e.g., BMI) is usually observed only at the individual or visit level. This leads to a discrepancy in numbers of nested levels between the predictors (PA) and outcomes, raising analytic challenges. To address this issue, we proposed a multilevel longitudinal functional principal component analysis (mLFPCA) model to directly model multilevel functional PA inputs in a longitudinal study, and then implemented a longitudinal functional principal component regression (FPCR) to explore the association between PA and obesity‐related health outcomes. Additionally, we conducted a comprehensive simulation study to examine the impact of imbalanced multilevel data on both mLFPCA and FPCR performance and offer guidelines for selecting optimal methods.


Movement- and Posture-based Measures of Sedentary Patterns and Associations with Metabolic Syndrome in Hispanic/Latino and non-Hispanic Adults

August 2024

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34 Reads

Journal of Racial and Ethnic Health Disparities

Background Sedentary behavior has been identified as a significant risk factor for Metabolic Syndrome (MetS). However, it is unclear if the sedentary pattern measurement approach (posture vs. movement) impacts observed associations or if associations differ for Hispanic/Latino communities, who have higher risk of MetS. Methods Participants from the Community of Mine (CoM) study (N = 602) wore hip-based accelerometers for 14 days and completed MetS-associated biomarker assessment (triglycerides, blood pressure, fasting glucose, HDL cholesterol, waist circumference). Sedentary patterns were classified using both cutpoints (movement-based) and the Convolutional Neural Network Hip Accelerometer Posture (CHAP) algorithm (posture-based). We used logistic regression to estimate associations between MetS with sedentary patterns overall and stratified by Hispanic/Latino ethnicity. Results CHAP and cutpoint sedentary patterns were consistently associated with MetS. When controlling for total sedentary time and moderate to vigorous physical activity, only CHAP-measured median sedentary bout duration (OR = 1.15, CI: 1.04, 1.28) was significant. In stratified analysis, CHAP-measured median bout duration and time spent in sedentary bouts ≥ 30 min were each associated with increased odds of MetS, but the respective associations were stronger for Hispanic/Latino ethnicity (OR = 1.71 and 1.48; CI = 1.28–2.31 and 1.12–1.98) than for non-Hispanic/Latino ethnicity (OR = 1.43 and 1.40; CI = 1.10–1.87 and 1.06–1.87). Conclusions The way sedentary patterns are measured can impact the strength and precision of associations with MetS. These differences may be larger in Hispanic/Latino ethnic groups and warrants further research to inform sedentary behavioral interventions in these populations.



Study design. The figure summarizes the sample selection and study design. First, we selected individuals who were continuously enrolled in Medicare fee‐for‐service for at least 1 year. Index date was defined as the date of the first prescription for a drug of interest (loop diuretics, non‐loop diuretics, and non‐diuretic antihypertensives). The 360‐day period preceding index date was the baseline period used for the definition of covariates. Medication use was assessed starting on index date and throughout all the follow‐up period available for a patient. To enable sufficient time for medications to have a detectable effect on outcomes, we applied a 360‐day lag period after index date, and only started to collect outcome events 360 days after index date (start of the outcome observation period). The start of the outcome observation period was used as time zero for survival analyses. Patients who had a diagnosis of the outcome or were censored before the start of the outcome observation period were excluded from analyses, as they would not have time at risk.
Adjusted hazard ratios of Alzheimer's disease and all‐cause dementia for ever use of medications of interest. Ever use of of medications was defined with time‐varying indicator variables, which denoted whether an individual had used a drug of interest at any point of time prior to the period of assessment. In other words, once an individual used a drug, the indicator variable for ever used remained 1 throughout follow‐up. Non‐loop diuretics included diuretic drugs that are not loop diuretics (thiazides and potassium‐sparing diuretics). Non‐diuretic antihypertensives include ACE inhibitors, ARBs, calcium channel blockers, and beta‐blockers. The model was adjusted for age, sex, race, low‐income subsidy, Medicaid eligibility, and all chronic conditions listed in Table 1 with the exception of hypertension. ACE, angiotensin‐converting enzyme; ARBs, angiotensin II receptor blockers.
Adjusted hazard ratios of AD and all‐cause dementia, per 1‐year increment in drug use. Cumulative use of medications was defined with continous time‐dependent variables, and was measured at each interval as the cumulative number of 30‐day intervals that each subject had used a specific medication. To improve interpretability, the variable was expressed per 1‐year increments. For example, the hazard ratio of AD associated with bumetanide can be interpreted as follows: For each 1‐year increment in the use of bumetanide, the hazards of AD increased by 0.1% (95% CI, –1.6% to 1.9%). Non‐loop diuretics included diuretic drugs that are not loop diuretics (thiazides and potassium‐sparing diuretics). Non‐diuretic antihypertensives include ACE inhibitors, ARBs, calcium channel blockers, and beta‐blockers. The model was adjusted for age, sex, race, low‐income subsidy, Medicaid eligibility, and all chronic conditions listed in Table 1 with the exception of hypertension. AD, Alzheimer's disease; ACE, angiotensin‐converting enzyme; ARBs, angiotensin II receptor blockers; CI, confidence interval.
Pharmacoepidemiology evaluation of bumetanide as a potential candidate for drug repurposing for Alzheimer's disease

June 2024

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49 Reads

INTRODUCTION Bumetanide, a loop diuretic, was identified as a candidate drug for repurposing for Alzheimer's disease (AD) based on its effects on transcriptomic apolipoprotein E signatures. Cross‐sectional analyses of electronic health records suggest that bumetanide is associated with decreased prevalence of AD; however, temporality between bumetanide exposure and AD development has not been established. METHODS We evaluated Medicare claims data using Cox proportional hazards regression to evaluate the association between time‐dependent use of bumetanide and time to first AD diagnosis while controlling for patient characteristics. Multiple sensitivity analyses were conducted to test the robustness of the findings. RESULTS We sampled 833,561 Medicare beneficiaries, 60.8% female, with mean (standard deviation) age of 70.4 (12). Bumetanide use was not significantly associated with AD risk (hazard ratio 1.05; 95% confidence interval, 0.99–1.10). DISCUSSION Using a nationwide dataset and a retrospective cohort study design, we were not able to identify a time‐dependent effect of bumetanide lowering AD risk. Highlights Bumetanide was identified as a candidate for repurposing for Alzheimer's disease (AD). We evaluated the association between bumetanide use and risk of AD. We used Medicare data and accounted for duration of bumetanide use. Bumetanide use was not significantly associated with risk of AD.


Figure 1. High urine lactate associated with diabetic kidney disease (DKD) among the HUNT3 cohort. (A) Lactate levels are significantly different between patients with DKD (eGFR < 60, n = 39) with age-and sex-matched healthy controls (n = 53) from the HUNT3 study, assessed using 2-tailed Welch's t test. (B) Plasma lactate is correlated with plasma glucose in patients with DKD. Pearson's correlation coefficient was used for correlation analysis. Data represent mean ± SD.
Figure 4. Dot plot of upregulated glycolytic and downregulated TCA cycle genes in the proximal tubular (PT) cells of patients with diabetic kidney disease (DKD). (A and B) Log 2 fold change calculated between the average of normalized glycolytic (A) and TCA cycle (B) gene expression values from the living donors (LD; n = 20) and patients with DKD (n = 11) in PT cells. The %DKD circle size shows the percentage of cells in which the gene was detected in DKD biopsies. PT, proximal tubule; PKM, pyruvate kinase; LDHA, lactate dehydrogenase A; HKDC1, hexokinase domain containing 1; HK1, hexokinase 1; ENO2, enolase 2; SUCLG2, succinate-CoA ligase GDP-forming subunit β; SUCLG1, succinate-CoA ligase GDP/ADP-forming subunit α; SDHD, succinate dehydrogenase complex subunit D; SDHC, succinate dehydrogenase complex subunit C; SDHB, succinate dehydrogenase complex subunit B; OGDH, oxoglutarate dehydrogenase; IDH2, isocitrate dehydrogenase (NADP + )2; ACO2, aconitase 2.
Figure 5. Lactate inhibits mitochondrial function in a dose-dependent manner in human kidney proximal tubule epithelial cells (HK2). (A) Oxygen consumption rates (OCR) were measured in HK2 cells (n = 15) using seahorse extracellular flux analyzer. Following basal respiratory measurements, indicated concentrations of lactic acid were injected through injection ports. (B) Basal respiration is represented immediately after treatment with lactate (n = 20). P values in A were calculated using 1-way ANOVA and Dunnett's test for multiple comparison testing. Data represent mean ± SD. Oligo, oligomycin; FCCP, carbonyl cyanide-p-trifluoromethoxyphenylhydrazone; Rot+AA, Rotenone+Antimycin A.
Figure 6. ATP production and intracellular lactate accumulation in isolated kidney sections. (A-C) Kidney sections (n = 5-6 each group) from 10-to 12-week-old male C57BL/6J mice were incubated with normal glucose (NG) and high glucose (HG) for 24 hours to measure the ATP level (A), extracellular lactate (B), and intracellular lactate (C). (D) The ATP level negatively correlates with intracellular lactate (n = 10). Two-tailed t test in A-C and simple linear regression analysis in D using the Pearson's correlation coefficient were performed for the statistical analyses. Data represent mean ± SD.
Cohort baseline characteristics
Glycolytic lactate in diabetic kidney disease

June 2024

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87 Reads

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10 Citations

JCI Insight

Lactate elevation is a well-characterized biomarker of mitochondrial dysfunction, but its role in diabetic kidney disease (DKD) is not well defined. Urine lactate was measured in patients with type 2 diabetes (T2D) in 3 cohorts (HUNT3, SMART2D, CRIC). Urine and plasma lactate were measured during euglycemic and hyperglycemic clamps in participants with type 1 diabetes (T1D). Patients in the HUNT3 cohort with DKD had elevated urine lactate levels compared with age- and sex-matched controls. In patients in the SMART2D and CRIC cohorts, the third tertile of urine lactate/creatinine was associated with more rapid estimated glomerular filtration rate decline, relative to first tertile. Patients with T1D demonstrated a strong association between glucose and lactate in both plasma and urine. Glucose-stimulated lactate likely derives in part from proximal tubular cells, since lactate production was attenuated with sodium-glucose cotransporter-2 (SGLT2) inhibition in kidney sections and in SGLT2-deficient mice. Several glycolytic genes were elevated in human diabetic proximal tubules. Lactate levels above 2.5 mM potently inhibited mitochondrial oxidative phosphorylation in human proximal tubule (HK2) cells. We conclude that increased lactate production under diabetic conditions can contribute to mitochondrial dysfunction and become a feed-forward component to DKD pathogenesis.


A doubly robust estimator for the Mann Whitney Wilcoxon rank sum test when applied for causal inference in observational studies

May 2024

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14 Reads

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2 Citations

The Mann-Whitney-Wilcoxon rank sum test (MWWRST) is a widely used method for comparing two treatment groups in randomized control trials, particularly when dealing with highly skewed data. However, when applied to observational study data, the MWWRST often yields invalid results for causal inference. To address this limitation, Wu et al. (Causal inference for Mann-Whitney-Wilcoxon rank sum and other nonparametric statistics, Stat. Med. 33 (2014), pp. 1261-1271) introduced an approach that incorporates inverse probability weighting (IPW) into this rank-based statistic to mitigate confounding effects. Subsequently, Mao (On causal estimation using U-statistics, Biometrika 105 (2018), pp. 215-220), Zhang et al. (Estimating Mann Whitney-type causal effects, J. Causal Inference 7 (2019), ARTICLE ID 20180010), and Ai et al. (A Mann-Whitney test of distributional effects in a multivalued treatment, J. Stat. Plan. Inference 209 (2020), pp. 85-100) extended this IPW estimator to develop doubly robust estimators. Nevertheless, each of these approaches has notable limitations. Mao's method imposes stringent assumptions that may not align with real-world study data. Zhang et al.'s (Estimating Mann Whitney-type causal effects, J. Causal Inference 7 (2019), ARTICLE ID 20180010) estimators rely on bootstrap inference, which suffers from computational inefficiency and lacks known asymptotic properties. Meanwhile, Ai et al. (A Mann-Whitney test of distributional effects in a multivalued treatment, J. Stat. Plan. Inference 209 (2020), pp. 85-100) primarily focus on testing the null hypothesis of equal distributions between two groups, which is a more stringent assumption that may not be well-suited to the primary practical application of MWWRST. In this paper, we aim to address these limitations by leveraging functional response models (FRM) to develop doubly robust estimators. We demonstrate the performance of our proposed approach using both simulated and real study data.


Citations (68)


... Nonparametric methods, such as Wilcoxon Rank-sum and U-statistic, can provide robustness to ill-behaved distribution [29,17,3,5,19,23]. In recent years, U statistics have emerged as an important class of statistical methods in biomedical research [14,28,30, 45] and social sciences [6,1,31], with particular developments in genomics [42,41,40] and causal inferences [43,38,7] for public health studies. The application of U statistics in tech industry are largely limited to ROC-AUC (equivalent to Mann-Whitney U [15]) for ML models' evaluation, and it's often just used as point estimate. ...

Reference:

Beyond Basic A/B testing: Improving Statistical Efficiency for Business Growth
A doubly robust estimator for the Mann Whitney Wilcoxon rank sum test when applied for causal inference in observational studies
  • Citing Article
  • May 2024

... Each panel displays 1,440 observations from midnight to midnight. 2024; Li et al., 2021;Qian et al., 2024;Staicu et al., 2010), temporal (Alam and Staicu, 2024;Greven et al., 2011;Park and Staicu, 2015;Sergazinov et al., 2023;Shamshoian et al., 2020;Zhu et al., 2019;Zipunnikov et al., 2014), nested/crossed (Brockhaus et al., 2015;Goldsmith et al., 2015;Serban et al., 2013;Shou et al., 2015), latent clustering (Marco et al., 2024), and multivariate (Cao et al., 2024;Gunning et al., 2024;Lin et al., 2024;Volkmann et al., 2023) designs. These data structures can be modeled as functional responses with scalar predictors, where the correlation induced by the sampling mechanism is modeled via structured functional residuals. ...

Multilevel Longitudinal Functional Principal Component Model
  • Citing Article
  • September 2024

Statistics in Medicine

... Overall, this study highlights that early metabolic impairments could serve as preclinical markers for DKD, suggesting a critical role of mitochondrial dysfunction in the progression of DKD. Elevated urinary lactate levels have emerged as a biomarker of mitochondrial dysfunction and correlate with a decline in kidney function in diabetic patients (Darshi et al., 2024). Mitophagy, the mitochondrial quality control program that recycles defective mitochondria is also impaired during DKD (Bhatia et al., 2019;Bhatia et al., 2020;Bhatia and Srivastava, 2023). ...

Glycolytic lactate in diabetic kidney disease

JCI Insight

... Risk of incident insulin resistance, T2D, and CVD has been identified years before onset through the identification of altered metabolic intermediary profiles of mitochondrial pathways [31][32][33][34][35][36]. Previous studies have shown success in interventions to increase standing, but little is known about its impact on metabolite profiles [17,37]. Only a few metabolomic studies have investigated the metabolic signatures of prolonged sitting and replacing sitting with standing [38][39][40][41]. ...

Arriba por la Vida Estudio: a randomized controlled trial promoting standing behavior to reduce sitting time among postmenopausal Latinas

Journal of Behavioral Medicine

... Zablocki and colleagues [39] determined that sitting bouts with durations of 0-30 minutes were associated with the highest accelerometer-detectable movement, with the lowest occuring at 34 minutes, before a slight uptick of acceleration occuring when sitting continues to 39-60 minutes in duration. Our ndings offer a more in-depth perspective on these phenomena: rst, we demonstrate that shorter bouts of sitting likely constitute more EMG activity; and second, we show that after prolonged durations, sitting may have the propensity to become more active again. ...

Using functional principal component analysis (FPCA) to quantify sitting patterns derived from wearable sensors

International Journal of Behavioral Nutrition and Physical Activity

... Valid sleep nights had both a sleep journal entry and accelerometer data, with details previously published. 30 These data were used to estimate TST (duration of hours spent asleep per night), wake after sleep onset (WASO, period of wakefulness experienced after initially falling asleep, minutes per night) and SE (percentage of time asleep during each sleep period). Sleep parameters were determined using the Cole-Kripke algorithm. ...

Objective sleep and cardiometabolic biomarkers: results from the community of mine study

SLEEP Advances

... Other methodological contributions on functional data analysis of wearable device data were mainly related to clustering individuals: Lim et al. (2019), Jang et al. (2021) and Song et al. (2023). However, there were also novel methods proposed for fitting a Cox model on functional data (Cui et al., 2021), for inferential statistics (Chang and McKeague, 2022), for functional kernel machine regression (Naiman and Song, 2022), and for modeling changes in diurnal physical activity patterns based on diffeomorphisms between Riemann manifolds Zou et al. (2023). Lim et al. (2019) proposed a two-step clustering method where the physical activity curves are first transformed either by using a standard rank-based transformation or the thick-pen transformation (Fryzlewicz and Oh, 2011), a way to smooth raw data alternative to more conventional methods, such as spline or kernel smoothing. ...

A Riemann manifold model framework for longitudinal changes in physical activity patterns
  • Citing Article
  • December 2023

The Annals of Applied Statistics

... We recently demonstrated a renal protective effect of methylthioadenosine phosphorylase (MTAP) inhibition in experimental models of diabetic kidney disease 5 . MTAP is an enzyme involved in purine and polyamine metabolism, breaking methylthioadenosine (MTA) down for nucleotide recycling. ...

Endogenous adenine mediates kidney injury in diabetic models and predicts diabetic kidney disease in patients

The Journal of clinical investigation

... However, there is a potential benefit of shortening sedentary behavior bouts and increasing sedentary behavior breaks. Because brief muscle contractions during a sedentary behavior break may improve blood flow and promote glucose uptake and homeostasis (51). ...

Low movement, deep-learned sitting patterns, and sedentary behavior in the International Study of Childhood Obesity, Lifestyle and the Environment (ISCOLE)

International Journal of Obesity

... The incidence rates of de novo metastatic prostate cancer (PC) have increased significantly over the past few years, partly due to the adoption of novel diagnostic imaging techniques [1,2]. These patients are sensitive to castration treatment and are classified as the group of metastatic hormone-sensitive prostate cancer (mHSPC). ...

Association of Prostate-Specific Antigen Screening Rates With Subsequent Metastatic Prostate Cancer Incidence at US Veterans Health Administration Facilities
  • Citing Article
  • October 2022

JAMA Oncology