Lobna Abdellatif’s research while affiliated with Agriculture and Agri-Food Canada and other places

Intercropping, the growing of more than one crop at the same time within the same land area, could be a sustainable method of crop production in semiarid regions, which could increase biodiversity, and productivity and quality of crops compared to monocultures. This may be of significance under limited N, such as in organic agriculture, and could be an alternative to green manure. An organic study was conducted in the semiarid Canadian Prairie in drier than average years (2017–2018) to determine if intercropping legumes with non‐legumes could reduce weeds and increase grain yield and quality of crops at different seeding rate ratios. Intercrops examined were lentil (Lens culinaris Medik.)–yellow mustard (Sinapis alba L.), and field pea (Pisum sativum L.)–oat (Avena sativa L.), at three seeding rate ratios, and their respective monocultures. Weed density was lower in the pea–oat intercrop than the pea monoculture, while weed biomass was lower in the lentil–mustard intercrop than the lentil monoculture. Legumes, when intercropped even at monoculture ratios, had lower aboveground biomass and grain yield than their monocultures, with pea showing higher tolerance than lentil to competition with its companion. Total biomass and grain yield were accounted for mostly by the non‐legumes, which performed better than expected based on their seeding ratios. Mustard grown with lentil appeared to be more competitive than oat grown with pea. Grain weight of oat was higher in all intercrops with pea than in its monoculture, while grain protein of pea was higher when intercropped with oat than in its monoculture.

Organic crop production relies mostly on legumes for N input. Intercropping of organic legumes with more competitive crops might provide an alternative to the poor weed suppression and disease susceptibility of legumes. It might also be expected that such intercropping could be of benefit to crops grown in the subsequent year through increased N from the preceding intercropped legume, and lower weed growth due to the more competitive companion. The objective of this study, conducted under drier than average conditions in a semiarid region of the Canadian Prairies, was to determine how organic intercrops of legumes with a cereal or oilseed at different ratios would affect soil nutrients the next spring, weed levels, and the productivity and quality of the following durum wheat [Triticum turgidum L. ssp. durum (Desf.) Husn.]. Results from 2018 to 2019 showed that intercropping had a negligible impact on Olsen P and extractable K. Soil NO3‐N (>15‐cm deep) was lowest following the lentil (Lens culinaris Medik.)–mustard (Sinapis alba L.) intercrops and mustard monoculture, which was reflected in lower growth of the durum wheat. Conversely, some of the pea (Pisum sativum L.)–oat (Avena sativa L.) intercrops and the oat and all legume monocultures resulted in higher durum wheat biomass and grain yield, with their highest values observed after the checks summerfallow and forage pea manure. Weeds tended to have lower densities after the intercrops than the grain legume monocultures. Nutrient concentration in plant tissue suggested that weeds could be a greater source of soil nutrients than crops.

Chryseobacterium sp. MHB01, Rhodococcus qingshengii MHB02, and Agrobacterium tumefaciens MHB03 were isolated from superabsorbent polymer granules cultured with an arbuscular mycorrhizal fungus. Whole-genome sequencing of these three strains revealed genome sizes of 4.57 Mb, 7.13 Mb, and 5.49 Mb with G + C contents of 36.9%, 62.5%, and 58.2%, respectively.

Rhizophagus irregularis is the model species for arbuscular mycorrhizal fungi (AMF) research and the most widely propagated species for commercial plant biostimulants. Using asymbiotic and symbiotic cultivation systems initiated from single spores, advanced microscopy, Sanger sequencing of the glomalin gene, and PacBio sequencing of the partial 45S rRNA gene, we show that four strains of R. irregularis produce spores of two distinct morphotypes, one corresponding to the morphotype described in the R. irregularis protologue and the other having the phenotype of R. fasciculatus. The two spore morphs are easily distinguished by spore colour, thickness of the subtending hypha, thickness of the second wall layer, lamination of the innermost layer, and the dextrinoid reaction of the two outer spore wall layers to Melzer's reagent. The glomalin gene of the two spore morphs is identical and that of the PacBio sequences of the partial SSU‐ITS‐LSU region (2780 bp) obtained from single spores of the R. cf fasciculatus morphotype has a median pairwise similarity of 99.8% (SD = 0.005%) to the rDNA ribotypes of R. irregularis DAOM 197198. Based on these results, we conclude that the model AMF species R. irregularis is dimorphic, which has caused taxonomic confusion in culture collections and possibly in AMF research.

The antagonistic activities of three potential biocontrol agents (BCAs), Clonostachys miodochialis, C. rosea, and Minimedusa polyspora, were tested in vitro against the target fungi Fusarium acuminatum, F. avenaceum, F. equiseti, F. graminearum, and Cochliobolus sativus. In vitro dual-culture assay revealed that the BCAs were able to inhibit the mycelial growth of most of the target fungi, with the most common mode of action being mycoparasitism. After 5 d of incubation, depending on the host-parasite interface, biotrophic mycoparasitism was observed via attachment structures on F. avenaceum, F. equiseti, and C. sativus. Haustoria and appressoria were formed by C. miodochialis and M. polyspora on F. avenaceum and C. sativus, respectively. Clamp-like structures were also produced by both BCAs, depending on the host fungus. Clonostachys rosea formed only contact points on its hosts. Coiling structure was observed with C. rosea and M. polyspora occasionally in pure culture but more abundantly in the dual-culture assay. After an additional 3 to 5 d of incubation, the BCAs started damaging their host cells. Asexual fruiting bodies of the BCAs spread necrotrophically on F. acuminatum and F. graminearum and began destroying their mycelia after the initial 5 d of incubation. Furthermore, mycelial dissolution of F. acuminatum by an excreted substance was observed at a distance before direct contact with C. miodochialis. The diffuse metabolite assay revealed that the highest inhibition of the three BCAs was on C. sativus and their least effectiveness was observed on F. graminearum. Overall, these results provide evidence that C. miodochialis, C. rosea, and M. polyspora are potential candidates for biological control of the tested target fungi. This constitutes the first report that these three BCAs are able to establish an initial biotrophic relationship followed by a necrotrophic lifestyle. In addition, C. miodochialis has not previously been reported as a BCA.

There has been a steady expansion in organic production in the Canadian Prairies because of higher consumer demand. Thus, increasing the sustainability of organic systems would be important. An organic trial was conducted in the semi‐arid Prairies (2010–2015) with two tillage intensities (low vs. high) in a simplified [spring wheat (Triticum aestivum L.)–forage pea (Pisum sativum L.) green manure (GM)] and a diversified (spring wheat–oilseed–pulse–GM) rotation. In 2013–2015, the impact of these systems on root rot was examined on spring wheat, pulses, and GM crops. Several Fusarium spp. were more abundant in GM and pulses than spring wheat, suggesting that they could be a source of inoculum, especially of F. avenaceum (Fr.:Fr.) Sacc. (teleomorph Gibberella avenacea Cook), for Fusarium diseases in cereals including Fusarium head blight. Under different environments, tillage–rotation systems had an impact on root disease and fungal populations, some of which have biocontrol capabilities. There was no difference among systems for root rot in forage pea, while the low tillage‐diversified rotation had the lowest root rot in spring wheat but was associated with more Fusarium spp. For all crops, most Fusaria were not associated with root rot severity. Cochliobolus sativus (Ito & Kurib.) Drechs. ex Dast. [anamorph Bipolaris sorokiniana (Sacc.) Shoemaker] accounted the most for root rot in spring wheat and was favored by intensive tillage and simplified rotations. The Shannon diversity index (H') of fungal species in spring wheat was higher in the diversified rotation under both tillage intensities than when spring wheat alternated with GM in the simplified rotation, especially under high tillage. In forage pea, H' was higher than in spring wheat, but did not differ among tillage–rotation systems.

Arbuscular mycorrhizal (AM) fungi are ecologically important for the growth and survival of most vascular plants. These fungi are known as obligate biotrophs that acquire carbon solely from host plants. A ¹³C-labeling experiment revealed the ability of axenically grown Rhizophagus irregularis DAOM 197198 to derive carbon from axenic culture on a relatively novel medium containing two sources of palmitic acid developed by Ishii (designated IH medium). In a separate experiment, this model fungus grew larger mycelia and produced more daughter spores on the IH medium in the presence of two Variovorax paradoxus strains than in axenic culture. In contrast, a strain of Mycobacterium sp. did not influence the growth of the AM fungus. Rhizophagus irregularis produced branched absorbing structures on the IH medium and, in monoxenic culture with V. paradoxus, sometimes formed densely packed hyphal coils. In this study, we report for the first time the formation of coarse terminal pelotons and of terminal and intercalary very fine (≈ 1 μm diameter) hyphal elongations, which could form daughter spores in the presence of V. paradoxus. This study shows the value of IH medium and certain rhizobacteria in the culture of R. irregularis DAOM 197198 in vitro.

Certain H2-oxidizing rhizobacteria promote the growth of legume plants nodulated with rhizobia devoid of an uptake hydrogenase system (Hup−). We demonstrated and assessed the plant growth-promoting ability of H2-oxidizing rhizobacteria naturally associating with lentil roots nodulated by rhizobia possessing an uptake hydrogenase system (Hup+ lentil) in semiarid Canada. The ten H2-oxidizing rhizobacteria isolated were strains of Variovorax paradoxus, Variovorax sp., Rhodococcus sp., Mycobacterium sp., Acinetobacter sp., Acinetobacter calcoaceticus, and Curtobacterium sp. Several of these strains increased Hup+ lentil shoot and root biomasses, and root nodule number in the absence or presence of drought stress. Inoculation with H2-oxidizing rhizobacteria enhanced the growth of Hup+ lentil infected by the fungal root pathogens Fusarium avenaceum, Rhizoctonia solani, and Pythium ultimum. Fusarium avenaceum growth was markedly suppressed by all H2-oxidizing rhizobacteria in vitro, and seven isolates also suppressed the growth of both R. solani and P. ultimum. Siderophore production was detected in nine isolates and one isolate could solubilize phosphate. Indole-3-acetic acid production was found in four isolates, and 1-aminocyclopropane-1-carboxylate deaminase activity in six isolates. Most H2-oxidizing rhizobacterial isolates exhibited multiple plant growth-promoting attributes and all isolates exhibited at least one. Our results suggest that the H2-oxidizing rhizobacteria naturally associating with lentil roots in semiarid Canada are beneficial in an Hup+ environment.