Lin Liu’s research while affiliated with Jilin University and other places

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Publications (322)


Study on the moisture adsorption characteristics of AlPO4-LTA and its dehumidification performance in desiccant coated dehumidifier
  • Article

April 2025

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7 Reads

International Journal of Refrigeration

Yaofeng Zhang

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Lin Liu

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Peng Liu

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Lung Function Impairment and Risks of Incident Cardiovascular Diseases and Mortality Among People With Type 2 Diabetes: A Prospective Cohort Study

February 2025

Diabetes Care

OBJECTIVE Individuals with type 2 diabetes (T2D) frequently exhibit impaired lung function, potentially accelerating the onset of cardiovascular disease (CVD), although prospective studies remain limited. We aimed to explore the relationship between lung function impairment and risk of CVD and mortality within this high-risk population. RESEARCH DESIGN AND METHODS This prospective study included 16,242 participants with T2D and free of CVD from the UK Biobank. Obstructive physiology (OP), restrictive physiology (RP), and preserved ratio impaired spirometry (PRISm) were defined using spirometry, including forced expiratory volume in 1 s (FEV1) and forced vital capacity (FVC). Fine-Gray subdistribution hazards models and Cox proportional hazards models were used to estimate risks of CVD and all-cause mortality, respectively. RESULTS During a median follow-up of 13.9 years, 2,825 incident cases of CVD and 2,811 deaths were documented. Lower FEV1, FVC, FEV1/FVC ratio, FEV1 percent predicted, and FVC percent predicted were related to higher risks of CVD and all-cause mortality. Compared with preserved lung function, the adjusted subdistribution hazard ratios (HRs) for CVD were 1.19 (95% CI 1.05–1.35) for OP and 1.47 (95% CI 1.33–1.65) for RP. Compared with the control group, the subdistribution HRs for CVD were 1.20 (95% CI 1.06–1.36) for OP and 1.43 (95% CI 1.29–1.59) for PRISm. These associations were consistent across subgroups and sensitivity analyses. Adding lung function measurements significantly enhanced the performance of CVD prediction beyond the SCORE2-Diabetes model. CONCLUSIONS Lung function impairment was associated with increased risks of CVD and all-cause mortality among individuals with T2D.


Purification and crystallization of CfrX. (A) UV-visible absorption spectrum of CfrX (10 µM). Inset shows the image of the purified sample (11 mg/mL). (B) SEC profile of the pooled peak fractions. Inset shows the SDS-PAGE analysis of the peak (~ 61 mL). The absorbances at 333, 461, and 555 nm indicate the bound [2Fe-2S] cluster. (C) Spindle-shaped crystals of CfrX
Overall structure of holo CfrX. (A) Secondary structures and the [2Fe-2S] cluster within a CfrX monomer. CfrX is shown in ribbons and in rainbow color from N- to C- terminus (blue to red), and the [2Fe-2S] cluster is shown in ball-and-stick model. (B) CfrX dimer. Chains A and B are colored in magenta and cyan, respectively. The box denotes area enlarged in C. (C) Residues involved in dimerization. Hydrogen bonds are indicated by dashed lines
The [2Fe-2S] cluster. (A) The CfrX [2Fe-2S] cluster. The 2Fo-Fc map (contour level = 1.0) are shown in green mesh. (B) The Fo-Fc map (contour level = 3.0) of the CfrX [2Fe-2S] cluster. The four ligating sulfur atoms are shown in blue mesh. The following angles are labeled: Fe-S-S-Fe, Cys8-S-Fe-Cys11-S, and Cys51-S-Fe-Cys55-S. (C) Superimposition of the [2Fe-2S] clusters of CfrX and AaFd4. AaFd4 (PDB 1F37) is colored in green and its ligating Cys residues are labeled. (D) Sequence alignment of CfrX and AaFd4. Conserved residues are in white letters and black boxes; partially conserved residues are in gray boxes; the ligating Cys residues are in orange letters. Secondary structural elements are shown above and below the respective sequences. Residues in the dimeric interface are indicated by diamonds. AaFd4 starts with Met0 to comply with the numbering scheme in PDB
Structural comparison. (A) Superimposition of monomers of CfrX (this work, pink) and AdFd4 (PDB 1F37, chain A, green). (B) Superimposition of CfrX and the C-terminal thioredoxin-like ferredoxin domains of the 24 kDa subunit (PDB 7ARC, chain E, orange) and of the subunit E (PDB 8E9G, chain E, yellow) of complex I. (C) Comparison of the dimers of CfrX and AdFd4. The left panel shows the superimposition with the chains A aligned. The same orientation is maintained in all three panels
Comparison of CfrX, AaFd4, and the CbiW model. Middle panel shows the zoom-in views of the [2Fe-2S]-binding sites. Bottom panel shows the surface potential (red negative, blue positive, and white neutral) of the corresponding sites
Crystal Structure of a Thioredoxin-like Ferredoxin Encoded Within a Cobalamin Biosynthetic Operon of Rhodobacter capsulatus
  • Article
  • Publisher preview available

February 2025

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16 Reads

The Protein Journal

Thioredoxin-like ferredoxin is a small homodimeric protein containing a [2Fe-2S] cluster in each monomer. It is only found in bacteria but its physiological function remains largely unknown. The cobalamin biosynthetic operon in the genome of the purple phototroph Rhodobacter capsulatus encodes a putative ferredoxin dubbed as CfrX. To characterize this protein, we cloned, expressed, purified, and crystalized the recombinant CfrX in the iron-sulfur cluster-bound state, and solved the structure at 2.1-Å resolution. Adopting a typical thioredoxin-like ferredoxin fold, a CfrX monomer binds one [2Fe-2S] cluster through four Cys residues located on two protruding loops. Unexpectedly, CfrX dimerizes in a previously unreported manner. With the structural information, we ascertained CfrX as a thioredoxin-like ferredoxin. While the precise function of CfrX in cobalamin biosynthesis is elusive, a link between CfrX and aerobic cobaltochelatase should exist due to the gene clustering pattern. We also discussed the possible relationship among CfrX, CobW, and CobNST with respect to the [2Fe-2S] cluster.

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Odd Ratios (95% Confidence interval) of Elevated Hs-cTnT and NT-proBNP by Blood Lead and Cadmium. Hs-cTnT, high sensitivity cardiac troponin, NT-proBNP, N-terminal pro b-type natriuretic peptide. Atomic absorption spectrometry was used in NHANES, 1999–2002, inductively coupled plasma mass spectrometry was used in NHANES, 2003–2004. Elevated NT-proBNP was defined as blood NT-proBNP ≥ 125 pg/ml. Elevated hs-cTnT was defined as blood hs-cTnT ≥ 19 ng/L. Restrict cubic spline with knots set at the 25th, 50th, and 75th percentiles were used to fit the models. Model 1 crude model. Model 2 adjusted for age, gender, race/ethnicity, smoking status, systolic blood pressure, body mass index, total cholesterol, hemoglobin A1c, estimated glomerular rate, diabetes, anti-diabetic drug, hypertension, anti-hypertensive drug, and statin.
Odd Ratios (95% Confidence interval) of Elevated Hs-cTnT and NT-proBNP by Blood Lead in Subgroups. Odd ratios for elevated lead compared to not elevated were presented. Hs-cTnT, high sensitivity cardiac troponin, NT-proBNP, N-terminal pro b-type natriuretic peptide, BMI, body mass index, eGFR, estimated glomerular rate. Elevated NT-proBNP was defined as blood NT-proBNP ≥ 125 pg/ml. Elevated hs-cTnT was defined as blood hs-cTnT ≥ 19 ng/L. Models were adjusted for age, gender, race/ethnicity, smoking status, systolic blood pressure, body mass index, total cholesterol, hemoglobin A1c, estimated glomerular rate, diabetes, anti-diabetic drug, hypertension, anti-hypertensive drug, and statin. *P value for the interaction term was significant at Bonferroni corrected p value (0.008 for race/ethnicity and 0.05 for eGFR). P-values for Pairwise comparison: Non-Hispanic Black vs. Mexican American, 0.006, Non-Hispanic Black vs. Non-Hispanic White, < 0.001, Non-Hispanic Black vs. Other, < 0.001
Odd Ratio (95% Confidence interval) of Elevated Hs-cTnT and NT-proBNP by Blood Cadmium in Subgroups. Odd ratios for elevated cadmium compared to not elevated were presented. Hs-cTnT, high sensitivity cardiac troponin, NT-proBNP, N-terminal pro b-type natriuretic peptide, BMI, body mass index, eGFR, estimated glomerular rate. Elevated NT-proBNP was defined as blood NT-proBNP ≥ 125 pg/ml. Elevated hs-cTnT was defined as blood hs-cTnT ≥ 19 ng/L. Models were adjusted for age, gender, race/ethnicity, smoking status, systolic blood pressure, body mass index, total cholesterol, hemoglobin A1c, estimated glomerular rate, diabetes, anti-diabetic drug, hypertension, anti-hypertensive drug, and statin
Associations Between Lead and Cadmium Exposure and Subclinical Cardiovascular Disease in U.S. Adults

January 2025

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5 Reads

Cardiovascular Toxicology

The impact of lead and cadmium exposure on subclinical cardiovascular disease (CVD), indicated by elevated high-sensitivity cardiac troponin (hs-cTnT) and N-terminal pro b-type natriuretic peptide (NT-proBNP) remains uncertain. We analyzed data from participants aged 20 and older, without overt CVD, in the National Health and Nutrition Examination Survey (NHANES; 1999–2004). Elevated lead and cadmium levels were defined as 3.5 μg/dL and 1.0 μg/L (inductively coupled plasma mass spectrometry) and 3.8 μg/dL and 0.9 μg/L (atomic absorption spectrometry), respectively. Elevated hs-cTnT was ≥ 19 ng/L, and elevated NT-proBNP was ≥ 125 pg/mL. Multivariate logistic regression estimated the odds ratios (OR) and 95% confidence intervals (CI) for elevated biomarkers. Among 10,197 participants (mean age 48.8 years; 50.3% female), 5.3% had elevated hs-cTnT and 19.4% had elevated NT-proBNP. Elevated blood lead was associated with increased ORs for elevated hs-cTnT (OR 1.45, 95% CI 1.15–1.84) and NT-proBNP (OR 1.66, 95% CI 1.40–1.97). The corresponding ORs (95% CI) for elevated blood cadmium were 1.33 (1.02, 1.74) and 1.39 (1.18, 1.65). The effect of elevated blood lead on NT-proBNP was particularly pronounced among non-Hispanic Blacks (OR [95% CI], 3.26 [2.24, 4.74]) compared to Mexican Americans (1.46 [0.99, 2.17]) and non-Hispanic Whites (1.31 [1.02, 1.68]) and was stronger in individuals with impaired kidney function (OR [95% CI], 2.31 [1.43, 3.75]) compared to those with normal kidney function (1.44 [1.18, 1.75]). This study first reveals the association between lead and cadmium exposure and subclinical CVD, underscoring the need for targeted preventive measures to reduce cardiovascular risk and improve health outcomes.


Machine learning driven rational design of dual atom catalysts on graphene for carbon dioxide electroreduction

January 2025

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21 Reads

The development of high-performance atomic catalysts for the carbon dioxide reduction reaction (CO2RR) is a time-consuming process due to the complexity of the reaction mechanism and the uncertainty of the active site. Herein, we have proposed combining density functional theory (DFT) and machine learning (ML) to investigate the potential of topological graphene-based dual-atom catalysts (DACs) as CO2RR electrocatalysts. By analyzing the ML results, we identify the number of d-orbital electrons in the active site as a key factor influencing the CO2RR catalytic activity. Additionally, we propose a simple descriptor to measure the CO2RR activity of these DACs. Our findings provide plausible explanations for the synergistic interactions between bimetallic atoms in CO2RR and allow us to screen the homogeneous Ni-Ni pair as the most promising dual-atom catalysts. This work offers a fast ML approach based on limited DFT calculations to predict the most electroactive and stable DACs on carbon support for CO2RR, facilitating rapid screening of high-performance dual-atom catalysts.


Structural Basis for Monomer-Dimer Transition of Dri1 Upon Heme Binding

December 2024

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6 Reads

Proteins Structure Function and Bioinformatics

Domain related to iron (DRI) contains approximately 90 residues and is involved in iron and heme metabolism. Recent discoveries have annotated Dri1, a DRI‐only protein from the cyanobacterium Synechocystis , as a regulator of succinate dehydrogenase in a b ‐type heme‐dependent manner or as a c ‐type heme oxygenase. Here, we report high‐resolution structures of Dri1 in complex with b ‐type and c ‐type hemes, respectively. Bis‐His‐ligated heme is located in the middle of the dimeric Dri1 complex with heme b , as well as in the complex of monomeric Dri1 with c ‐type heme, but distinct heme binding modes are revealed. Structural analyses suggest that Dri1 may participate in the succinate dehydrogenase activity and/or the metabolism of cytochromes.




Fig. 1 Study flowchart. NCDS, National Childhood Development Study; BCS70, 1970 British Cohort Study; CPA, childhood psychosocial adjustment.
Association between childhood psychosocial adjustment (CPA) and mid-life cardiometabolic diseases for the National Childhood Development Study (NCDS) and 1970 British Cohort Study (BCS70) meta-analyses a
Childhood psychosocial adjustment and midlife obesity, diabetes and hypertension: prospective study from two birth cohorts

October 2024

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30 Reads

The British journal of psychiatry: the journal of mental science

Background Understanding how childhood psychosocial adjustment (CPA) influences later life health outcomes is crucial for developing interventions to mitigate the long-term risk of cardiometabolic diseases (CMDs). Aims To investigate the association between CPA and incident CMDs in mid-life, and the mediating roles of educational attainment, smoking habits and depression during young adulthood. Method A prospective cohort study utilised data from the 1958 National Child Development Study (NCDS; 1958–2013) and the 1970 British Cohort Study (BCS70; 1970–2018), encompassing 22 012 participants assessed for CPA in childhood, who were subsequently evaluated for educational attainment, smoking habits and depression in young adulthood, followed by assessments for CMDs in mid-life. CPA was assessed using the Bristol Social Adjustment Guides in the NCDS and the Rutter Child Behaviour Scale in the BCS70, with higher scores indicating poorer psychosocial adjustment. The primary outcomes were the mid-life incidences of hypertension, diabetes and obesity. Results Compared with children in the lowest tertile for CPA scores, those in the middle tertile had an adjusted odds ratio for hypertension of 0.98 (95% CI 0.90–1.06), whereas those in the highest tertile had an odds ratio of 1.17 (95% CI 1.08–1.26). For diabetes, the corresponding odds ratios (95% CI) were 1.15 (0.98–1.35) and 1.39 (1.19–1.62). For obesity, the corresponding odds ratios (95% CI) were 1.08 (1.00–1.16) and 1.18 (1.09–1.27). These associations were partially mediated by educational attainment (2.4–13.9%) and depression during young adulthood (2.5–14.9%). Conclusions Poorer CPA is correlated with the development of hypertension, diabetes and obesity in mid-life. Interventions aimed at improving CPA may help in reducing the burden of these diseases in later life.


Citations (60)


... This is understandable as extensive lipid disruption is linked to skin irritancy [245][246][247]. Therefore, it is imperative to consider that skin permeation studies can often provide misleading results if the skin irritancy potential is not evaluated, as excessive dermal lipid disruption can facilitate increased permeation enhancement and dermal irritancy [56,248]. ...

Reference:

Evaluation of Drug Permeation Enhancement by Using In Vitro and Ex Vivo Models
The molecular design of novel phospholipid-inspired ionic liquid transdermal penetration enhancers: Innovative insights on the action mode and mechanism
  • Citing Article
  • October 2024

International Journal of Pharmaceutics

... These isolated vessel studies demonstrate that H 2 S can significantly reduce vessel contraction in response to vasoconstrictors like phenylephrine. This highlights the role of H 2 S in modulating vascular reactivity and underscores its potential therapeutic applications in conditions where vascular tone is dysregulated [49,[109][110][111]. ...

Targeted H2S-Mediated Gas Therapy with pH-Sensitive Release Property for Myocardial Ischemia–Reperfusion Injury by Platelet Membrane

... The severity of OSA is classified as follows, based on the Apnea-Hypopnea Index (AHI): mild (AHI = [5][6][7][8][9][10][11][12][13][14], moderate (AHI = [15][16][17][18][19][20][21][22][23][24][25][26][27][28][29], and severe (AHI ≥ 30). The prevalence of OSA in the general adult population in Europe is estimated to be around 44%, with approximately 23% of individuals affected by moderate to severe OSA (AHI ≥ 15) [3]. ...

Association between sleep patterns and galectin-3 in a Chinese community population

BMC Public Health

... CBMs position the catalytic domain of the GH close to the substrate, especially insoluble ones, thereby increasing substrate accessibility and the local concentration of the enzyme, which in turn enhances catalytic efficiency Møller et al., 2021). By binding to the surface of insoluble substrates such as starch, cellulose, curdlan or chitin, CBMs may also disrupt the substrate structure and create binding sites for the catalytic domain of GHs, facilitating the hydrolysis of glycosidic bonds (Lv et al., 2024;Jiang et al., 2012;Bernardes et al., 2019). ...

Structural insights into curdlan degradation via a glycoside hydrolase containing a disruptive carbohydrate-binding module

Biotechnology for Biofuels and Bioproducts

... The HWE test function in PLINK was employed to assess the concordance of genotype frequencies with Hardy-Weinberg equilibrium [26]. The significance in all statistical procedures was considered at p < 0.05 [26,27]. ...

Shared genetic architecture between periodontal disease and type 2 diabetes: a large scale genome-wide cross-trait analysis

Endocrine

... Studies have highlighted m6A's critical role in tumor progression across various cancer types [20][21][22]. Nonetheless, few studies have explored m6A modification and its relationship with the TME in LUAD [23][24][25]. ...

Link between m6A modification and infiltration characterization of tumor microenvironment in lung adenocarcinoma
  • Citing Article
  • January 2024

Experimental Biology and Medicine

... Mendelian randomization (MR) is an epidemiological method that uses genetic variants as instrumental variables (IVs) to assess the causal relationship between exposure and disease outcomes [11]. The integration of network pharmacology with MR to analyze the impact of exposure on diseases allows the elucidation of complex biological networks and causal relationships between exposure and various health conditions [12]. MR helps establish causality and enhances the rigor and reliability of findings [13]. ...

Causal effects of gut microbiota on sepsis and sepsis-related death: insights from genome-wide Mendelian randomization, single-cell RNA, bulk RNA sequencing, and network pharmacology

Journal of Translational Medicine

... Constructing the dynamic coordination structure site to self-adaptively adsorb to important intermediates has been widely studied as an effective strategy to break this linear scaling relationship [58]. Based on the FeS 1 N 3 single-atom catalyst, the self-relaxation of geometric distortion and dynamic evolution of bond lengths enabled independent regulation of the *COOH and *CO intermediate adsorption energies, effectively breaking the linear scale relationship [60]. ...

Boosting Electrocatalytic Carbon Dioxide Reduction via Self‐Relaxation of Asymmetric Coordination in Fe‐Based Single Atom Catalyst

... Precise characterization of dual-active-center catalysts plays a central role in the identification of active sites and further establishment of reliable structure-activity relationships. In recent decades, various techniques were developed that enabled atomic-level interrogation of the nature of active sites (e.g., geometric and electronic structures) [69][70][71] . Here, we focus on a few approaches as demonstrated in Fig. 2 which are sensitive towards the dual-active-center structures, including transmission electron microscopy (TEM)/scanning transmission electron microscopy (STEM), extended X-ray absorption fine structure (EXAFS), DFT, X-ray diffraction (XRD)/Raman spectroscopy (Raman), and X-ray photoelectron spectroscopy (XPS)/X-ray absorption near edge structure (XANES). ...

Boosting Electrocatalytic Carbon Dioxide Reduction via Self‐Relaxation of Asymmetric Coordination in Fe‐Based Single Atom Catalyst
  • Citing Article
  • December 2023

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