Lei Yang’s research while affiliated with Hangzhou Dianzi University and other places

What is this page?


This page lists works of an author who doesn't have a ResearchGate profile or hasn't added the works to their profile yet. It is automatically generated from public (personal) data to further our legitimate goal of comprehensive and accurate scientific recordkeeping. If you are this author and want this page removed, please let us know.

Publications (5)


A schematic diagram of leukemogenesis and haematopoietic stem cell lineages regarding immune response and time delays. The black arrows above S, A and L represent their proliferation process, the black arrows from S to A, A to D, and L to T denote the division process. The red dot-head arrows indicate the feedback inhibitions to the proliferation and division from the cell (D) to S and A. τ1\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$\tau _1$$\end{document} and τ2\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$\tau _2$$\end{document} denote the time delays during the inhibition processes. τ3\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$\tau _3$$\end{document} is the delay during the immune response of L and αγ+L\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$\frac{\alpha }{\gamma +L}$$\end{document} is the immune response
The number of purely leukemia steady state El\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$E_l$$\end{document} is determined by the values of p30\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$p_{30}$$\end{document} and α\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$\alpha $$\end{document}. The black and blue lines represent Δ=0\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$\varDelta =0$$\end{document} and α=p30v30(2-1/p30)γ\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$\alpha =p_{30}v_{30}(2-1/p_{30})\gamma $$\end{document}, respectively. The symbol II (I, III) means that the system (4) has 2(1, 0) steady states El\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$E_l$$\end{document}
The existence of coexisting steady state (Ec\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$E_c$$\end{document}). The number of intersections of the curves G(L,D)=0\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$G(L,D)=0$$\end{document} (red) and H(L,D)=0\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$H(L,D)=0$$\end{document} (black) corresponds to the number of coexisting steady state (Ec\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$E_c$$\end{document}). If p10=0.55,p30=0.9\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$p_{10}=0.55, p_{30}=0.9$$\end{document} (discontinuous line), p10=0.6,p30=0.95\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$p_{10}=0.6, p_{30}=0.95$$\end{document} (continuous line) and p10=0.65,p30=0.7\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$p_{10}=0.65, p_{30}=0.7$$\end{document} (dot line), the system (4) will have two or one or zero coexisting steady state
The stability of El\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$E_l$$\end{document} versus α\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$\alpha $$\end{document} with p10=0.45\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$p_{10}=0.45$$\end{document},p20=0.68\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$p_{20}=0.68$$\end{document}, p30=0.8\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$p_{30}=0.8$$\end{document}. Black (green) stars denote the stable (unstable) equilibria El\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$E_l$$\end{document}
The stability of three types of equilibria against α\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$\alpha $$\end{document} with p10=0.51\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$p_{10}=0.51$$\end{document}, p20=0.85\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$p_{20}=0.85$$\end{document}, p30=0.98\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$p_{30}=0.98$$\end{document}. Black (green) points represent stable (unstable) equilibria. Square, round dots, and star signs denote the states Ec\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$E_c$$\end{document},Eh\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$E_h$$\end{document} and El\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$E_l$$\end{document}, respectively

+8

Effects of immune response and time delays in models of acute myeloid leukemia
  • Article
  • Publisher preview available

July 2022

·

42 Reads

·

1 Citation

Nonlinear Dynamics

·

Lei Yang

·

Min Luo

In this paper, we propose a general acute myeloid leukemia (AML) model and introduce an immune response and time delays into this model to investigate their effects on the dynamics. Based on the existence, stability and local bifurcation of three types of equilibria, we show that the immune response is a best strategy for the control of the AML on the condition that the rates of proliferation and differentiation of the hematopoietic lineage exceed a threshold. In particular, a powerful immune response leads to a bistability feature meaning there exist the leukemia cells and healthy cells in the bone marrow or only the healthy cells. In addition, we further reveal that the time delays in the feedback regulation and immune response process induce a series of oscillations around the steady state, which shows that the leukemia cells are hardly eliminated. Our work in this paper aims to investigate the complex dynamics of this AML model with the immune response and time delays on the basis of mathematical models and numerical simulations, which may provide a theoretical guidance for the treatments of the AML.

View access options

Saddle-ghost induced heteroclinic cycling in five-dimensional positively auto-regulated and mutually repressive gene regulation networks

July 2022

·

242 Reads

·

4 Citations

Nonlinear Dynamics

In this study, we focus on the non-local impact of saddles in a multiply connected gene regulation network. We find that so-called saddle-ghosts, that is to say the impact saddles impart on dynamics even if the saddles are remote, is significant and can be essentially dominating the nature of the dynamics the network presents. We focused our enquiry on an idealized five-gene auto-regulating and mutually repressive fully connected gene regulation network. This network is a compromise, for much higher gene-number networks, the analysis would be intractable while smaller gene-number networks would perhaps not exhibit the characteristics of “many being more than just the sum of the individuals” that sought-after nonlinear complex dynamics require. We use a combination of numerical simulations and theoretical analysis. We find that, in most of the interesting dynamical range of asymmetry of repression strength between gene-pairs, non-local saddles impact the dynamics by slowing the flow of heteroclinic cycles in multiple locations and the shape is affected. We study the slowdown behavior of these heteroclinic paths throughout the dynamical range of asymmetry. Their presence makes the system essentially exhibit multiple quasi-stable states, with rapid deterministic transitions between them. These findings may impact Biology as it pertains to the understanding of the evolution of gene regulation dynamics.


Effects of Immune Response and Time Delays in Models of Acute Myeloid Leukaemia

October 2021

·

69 Reads

In this paper, we propose a general acute myeloid leukaemia (AML) model and introduce an immune response and time delays into this model to investigate their effects on the dynamics. Based on the existence, stability and local bifurcation of three types of equilibria, we show that the immune response is a best strategy for the control of the AML on the condition that the rates of proliferation and differentiation of the hematopoietic lineage exceed a threshold. In particular, a powerful immune response leads to bi-stability of the steady states, and a stronger response wipes out all the leukaemia cells. In addition, we further reveal that the time delays existing in the feedback regulation and immune response process induce a series of oscillations around the steady state, which shows that the leukaemia cells can hardly be eliminated. Our work in this paper aims to investigate the complex dynamics of this AML model with the immune response and time delays on the basis of mathematical models and numerical simulations, which may provide a theoretical guidance for the treatments of the AML.


Construction for the weighted ring-trees networks G g w , showing the first three iterations.
Construction for the weighted recursive trees T g w , showing the first three iterations.
Comparison of the network coherence between the ring-trees networks and recursive trees with w = 0.6 and g = 3.
Distributions of the network coherence ${H}_{{RT}}^{(1)}$ and ${H}_{{RT}}^{(2)}$ against n with g = 3.
Phase diagrams for the network coherence ${H}_{{RT}}^{(1)}$ and ${H}_{{RT}}^{(2)}$ in a two-dimensional space (n; w) with g = 3.
Exact calculations of network coherence in weighted ring-trees networks and recursive trees

August 2021

·

67 Reads

·

14 Citations

In this paper, we study noisy consensus dynamics in two families of weighted ring-trees networks and recursive trees with a controlled initial state. Based on the topological structures, we obtain exact expressions for the first- and second-order network coherence as a function of the involved parameters and provide the scalings of network coherence regarding network size. We then show that the weights dominate the consensus behaviors and the scalings. Finally, we make a comparison of the network coherence between the ring-trees networks and the recursive trees with the same number of nodes and show that the consensus of ring-trees networks is better than the trees since the initial state in the ring-trees networks is a ring.


Coexistence of Hopf-born Rotation and Heteroclinic Cycling in a Time-Delayed Three-Gene Auto-Regulated and Mutually-Repressed Core Genetic Regulation Network

June 2021

·

40 Reads

·

9 Citations

Journal of Theoretical Biology

In this work, we study the behavior of a time-delayed mutually repressive auto-activating three-gene system. Delays are introduced to account for the location difference between DNA transcription that leads to production of messenger RNA and its translation that result in protein synthesis. We study the dynamics of the system using numerical simulations, computational bifurcation analysis and mathematical analysis. We find Hopf bifurcations leading to stable and unstable rotation in the system, and we study the rotational behavior as a function of cyclic mutual repression parameter asymmetry between each gene pair in the network. We focus on how rotation co-exists with a stable heteroclinic flow linking the three saddles in the system. We find that this coexistence allows for a transition between two markedly different types of rotation leading to strikingly different phenotypes. One type of rotation belongs to Hopf-induced rotation while the other type, belongs to heteroclinic cycling between three saddle nodes in the system. We discuss the evolutionary and biological implications of our findings.

Citations (3)


... The trajectory progresses at a variable rate within SHC, as depicted in Fig. 4(b). It requires considerable time to traverse the vicinity of saddle point Q l 1 and overcome its influence on saddle-ghost; 33 however, the switching between saddle points is rapid, as illustrated in Fig. 4(c). As the trajectory advances within SHC, it gradually enters smaller neighborhoods surrounding different saddle points; nevertheless, closer proximity to a particular saddle point prolongs the duration required to eliminate saddle-ghost, as shown in Fig. 4(d). ...

Reference:

Hippocampus encoding memory engrams as stable heteroclinic network
Saddle-ghost induced heteroclinic cycling in five-dimensional positively auto-regulated and mutually repressive gene regulation networks

Nonlinear Dynamics

... Cell-fate choices between two and three possible states are well studied using a toggle switch (GRN featuring mutual inhibition between two transcription factors (TFs)) and a toggle triad (GRN featuring mutual inhibition between three TFs) through ordinary differential equation (ODE)-based formalism (Duddu et al., 2020;Gardner et al., 2000;Ma et al., 2006;Tian & Burrage, 2006;Yang et al., 2021) and boolean approaches (Hari et al., 2022a;Masashi et al., 2017;Zhou et al., 2016). Also, the role of extracellular signaling in directing differentiation trajectories has been elucidated using dynamical systems approaches, particularly for a toggle switch (Pezzotta & Briscoe, 2023;Wang et al., 2022). ...

Coexistence of Hopf-born Rotation and Heteroclinic Cycling in a Time-Delayed Three-Gene Auto-Regulated and Mutually-Repressed Core Genetic Regulation Network
  • Citing Article
  • June 2021

Journal of Theoretical Biology