Laimutis Telksnys’s research while affiliated with Vilnius University and other places

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Publications (33)


Towards adaptive method for peak migration time correction: discretization period in electropherograms
  • Article

July 2020

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56 Reads

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2 Citations

Chemija

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Capillary electrophoresis often causes unrepeatable peak migration times in the electropherogram due to changes of electroosmosis, yet in some cases this separation technique does not have a replacement alternative. Some attempts to overcome this issue have been performed introducing internal standards into the sample and compensating peak shifting in time. However, existing vector calculation-based methods are computationally intensive for portable instrumentation and usually limited to post-processing applications with 1 or 2 markers. In this work, an original approach of compensating peak migration time shift via signal discretization period correction is proposed. Using the proposed method, the number of reference points or markers that are used for compensation is extended. This method is effective in compensating migration time of peaks in real samples, where high sample injection volumes are used. Using 4 reference peaks in compensation, the method was capable of reducing the relative standard deviation of migration time of the peaks in the electropherograms more than 15 times. Corrected signal discretization periods indicated very high correlations with recorded separation currents, what can be perspective developing an adaptive peak migration time compensation method in capillary electrophoresis.


Fig. 1. Representation of the designed miniaturized colorimeters: (A) the 1st model with a single LED and wired communication, (B) the 2nd model with 3 LEDs and wired communication, (C) the 3rd model with 3 LEDs and wireless communication capability, (D) a wiring diagram of the designed instrument (drawn using Fritzing); (1) a two-euro coin for scale comparison, (2) a 3D printed frame, (3) LEDs, (4) an NRF24L01+ wireless communication module, (5) a cuvette with the sample, (6) a USB wire, (7) communication wires, (8) a cover, (9) an Arduino Nano microcontroller board, (10) a TCS3200 light sensor module
Fig. 3. Total phenolic content in different plant extracts determined using different colorimeters
Fig. 4. Determination using miniaturized colorimeter and comparison of TPC, TFC and RSA in strawberry and grape wines
Design and applications of miniaturized, portable LED based colorimeter
  • Article
  • Full-text available

December 2018

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828 Reads

Chemija

Portable and autonomous analytical instrumentation is becoming more important. Portable instrumentation can be designed via the miniaturization approach and this is a challenging task due to: (i) the limited battery power supply, (ii) a low number of mechanical and moving parts allowed in the design and (iii) susceptibility to changing environment and temperature fluctuations. In this work we describe the design of a light emitting diode (LED) based 3D printed miniaturized colorimeter (dimensions: 5 cm × 4 cm × 4.5 cm (length, width, height), weight less than 56 g). The colorimeter was optimized for determination of the total phenolic compound content, the total flavonoid content and radical scavenging activity. The designed instrument provides comparable results to those of a conventional desktop spectrophotometer existing on the market. The designed LED based miniaturized colorimeter has wireless communication capability. This work demonstrates that this instrument can be applied investigating real samples.

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Chromatographic Data Segmentation Method: a Hybrid Analytical Approach for Investigation of Antiviral Substances in Medicinal Plant Extracts

November 2018

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68 Reads

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9 Citations

Analytical Chemistry

The methodology described in this paper will significantly reduce the time required for understanding the relations between chromatographic data and bio-activity assays. The methodology is a hybrid of hypothesis based and data-driven scientific approaches. In this work, a novel chromatographic data segmentation method is proposed, which demonstrates the capability of finding what volatile substances are responsible for antiviral and cytotoxic effects in the medicinal plant extracts. Up to now the full potential of the separation methods has not been exploited in the life sciences. This was due to the lack of data ordering methods capable to adequately preparing the chromatographic information. Furthermore, the data analysis methods suffer of multidimensionality requiring a large number of investigated data points. A new method is described for processing any chromatographic information into a vector. The obtained vectors of highly complex and different origin samples can be compared mathematically. The proposed method, efficient with relatively small sized datasets, does not suffer of multidimensionality. In this novel analytical approach, the samples did not need fractionation and purification, what is typically used in hypothesis based scientific research. All investigations were performed using crude extracts possessing hundreds of phyto-substances. The antiviral properties of medicinal plant extracts were investigated using gas chromatography-mass spectrometry, antiviral tests and proposed data analysis method. The findings suggested that: (i) beta-cis-caryophyllene, linalool, eucalyptol possess antiviral activity, while (ii) thujone does not, and (iii) alpha-, beta-thujones, cis-p-menthan-3-one, estragole show cytotoxic effects.


Fig. 1. The process of development of Part 1 of speech corpus.
Table 1 The characteristics of the speech corpus Liepa.
Fig. 2. Automatic verification of Part 1 of corpus.
Lithuanian Speech Corpus Liepa for Development of Human-Computer Interfaces Working in Voice Recognition and Synthesis Mode

November 2018

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426 Reads

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16 Citations

Informatica

The problem of speech corpus for design of human-computer interfaces working in voice recognition and synthesis mode is investigated. Specific requirements of speech corpus for speech recognizers and synthesizers were accented. It has been discussed that in order to develop above mentioned speech corpus, it has to consist of two parts. One part of speech corpus should be presented for the needs of Lithuanian text-to-speech synthesizers, another part of speech corpus-for the needs of Lithuanian speech recognition engines. It has been determined that the part of speech corpus designed for speech recognition engines has to ensure the availability to present language specificity by the use of different sets of phonemes. According to the research results, the speech corpus Liepa, which consists of two parts, was developed. This speech corpus opens possibilities for cost-effective and flexible development of human-computer interfaces working in voice recognition and synthesis mode.


Compensation of the baseline temperature fluctuations for autonomous CE-C4D instrument working in harsh environments

June 2018

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68 Reads

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17 Citations

Electrophoresis

One of the main problems of the remote complex sample analysis instrumentation is that such systems are susceptible to temperature fluctuations. Temperature regulation is energetically ineffective, and it is not used in most of the field portable analytical systems. Separations performed in a changing temperature environment provide electropherograms with considerable baseline fluctuations, resulting in significant errors in detection and integration of the peaks. This paper describes electropherogram baseline compensation that is suitable for the capillary electrophoresis ‐ contactless conductivity detection analytical method. The baseline compensation utilizes linear or polynomial data processing methods, and can be programmed in‐line using simple microcontroller, or on‐line and off‐line in data acquisition software. This method is targeted for field portable and autonomous analytical systems that are utilized in a fluctuating environment. This article is protected by copyright. All rights reserved


Capillary Electrophoresis Sensitivity Enhancement Based on Adaptive Moving Average Method

April 2018

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72 Reads

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15 Citations

Analytical Chemistry

In the present work we demonstrate the novel approach to improve the sensitivity of the “out of lab” portable capillary electrophoretic measurements. Nowadays, many enhancement methods are: (i) underused (non-optimal), (ii) overused (distorts the data), or (iii) inapplicable in field-portable instrumentation due to lack of computational power. Described innovative migration velocity-adaptive moving average method uses optimal averaging window size and can be easily implemented with microcontroller. The contactless conductivity detection was used as a model for the development of a signal processing method and the demonstration of its impact on the sensitivity. The frequency characteristics of the recorded electropherograms and peaks were clarified. Higher electrophoretic mobility analytes exhibit higher frequency peaks, while lower electrophoretic mobility analytes exhibit lower frequency peaks. Based on obtained data, a migration velocity-adaptive moving average algorithm was created, adapted and programmed into capillary electrophoresis data processing software. Employing the developed algorithm, each data point is processed depending on a certain migration time of the analyte. Because of the implemented migration velocity-adaptive moving average method the signal-to-noise ratio improved up to 11 times for sampling frequency of 4.6 Hz and up to 22 times for sampling frequency of 25 Hz. This paper could potentially be used as a methodological guideline for the development of new smoothing algorithms that require adaptive conditions in capillary electrophoresis, and other separation methods.



Accuracy of the Parsing of Lithuanian Simple Sentences

December 2014

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9 Reads

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2 Citations

Information Technology and Control

The problem of the parsing accuracy of simple sentences is solved. The case of the language with high inflexion is investigated. The task is addressed by the example of the Lithuanian language, which one root can give hundreds or even more than one thousand word forms. The method of estimation of the parsing accuracy of the simple sentences of such language is given, which is based on the usage of knowledge of language consistent patterns. It is taken note, that in the case of language with high inflection and small number of users the usage of the statistical data on language is strongly restricted. The method of the accuracy estimation of the parsing of simple sentences is presented. The algorithm of implementation of the software is described. The validity of the propositions is proved by experiments. The material of the Lithuanian corpus was used for the experiments. The recommendations are given for the increasing of the accuracy of the parsing of simple sentences for the languages with high inflection.


Data analysis for heart rate sequence elements in mobile systems

November 2014

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4 Reads

The mobile application capabilities for extensive heart rate data analysis systems. The architecture and design of the environment tools for the software described. Presenting visualized graphs of the data structures and examples of the software created. Analyzed results for tablet computers capabilities working with large data arrays are provided. Explains the difficulties of medical personnel while working with patients that have heart disease.


Speech Keyword Spotting with Rule Based Segmentation

October 2013

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65 Reads

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4 Citations

Communications in Computer and Information Science

Speech keyword spotting is a retrieval of all instances of a given keyword in utterances. This paper presents improved template based keyword spotting algorithm. It solves speaker dependent speech segment detection in continuous speech with small vocabulary. The rules based segmentation algorithm allows to extract quasi-syllables. We evaluated the algorithm by experimental with synthetic signals. The algorithm results outperform classical keyword spotting algorithm with experimental data.


Citations (23)


... Among the identified 26 terpenes, six monoterpenes (including αand β-pinenes, myrcene, limonene, β-caryophyllene, and α-humulene) were commonly detected in both the leaves and inflorescences of hybrid Cannabis species. These six terpenes were well-known as predominant terpenes [29] and may contribute to the "entourage effect" of cannabinoids [30]. ...

Reference:

Identification of Terpene Compositions in the Leaves and Inflorescences of Hybrid Cannabis Species Using Headspace-Gas Chromatography/Mass Spectrometry
Chromatographic Data Segmentation Method: a Hybrid Analytical Approach for Investigation of Antiviral Substances in Medicinal Plant Extracts
  • Citing Article
  • November 2018

Analytical Chemistry

... For testing, 15 data files were taken from the Liepa project (Laurinčiukaitė et al., 2018), and 2 more were taken from non-public sources. The files were selected to have approximately equal amounts of read and spontaneous speech, male and female voices. ...

Lithuanian Speech Corpus Liepa for Development of Human-Computer Interfaces Working in Voice Recognition and Synthesis Mode

Informatica

... This leads to variations in the migration times, which is a serious disadvantage of the portable CE instrument, because migration time is the only parameter that can be used for sample component identification. Compensation for the baseline variations due to fluctuations of the ambient temperature for autonomous CE-C4D instruments (working in harsh environments) could be accomplished by analysis and compensation of the baseline [48]. In addition, this problem can be eased more precisely using a high-voltage-compatible flow sensor, capable of monitoring the volumetric flow inside the capillary during separation [49]. ...

Compensation of the baseline temperature fluctuations for autonomous CE-C4D instrument working in harsh environments
  • Citing Article
  • June 2018

Electrophoresis

... However, the defect of low CE sensitivity frequently creates unexpected detection challenges [23]. Many researchers have conducted in-depth research to improve the detection sensitivity of CE [24,25]. Wu et al. [26] used a large-volume sample stack to perform capillary an online enrichment of tetracycline antibiotics, which greatly improved the sensitivity of CE, and the detection limit reached 10 ppb. ...

Capillary Electrophoresis Sensitivity Enhancement Based on Adaptive Moving Average Method
  • Citing Article
  • April 2018

Analytical Chemistry

... It is generally accepted that intelligence refers to the simulation of human intelligence in machines that are programmed to think like humans. The elements of verbal HRI using the Lithuanian language are: A -Lithuanian speech recognizer (Greibus et al., 2017), which recognizes speech and converts it into understandable commands, codes and symbols for the humanoid robot, S -Lithuanian speech synthesizer (Laurinčiukaitė et al., 2018), which gives suggestions or advice verbally in using Lithuanian. A and S are installed in the hardware located in the head of the humanoid robot. ...

The phoneme set influence for lithuanian speech commands recognition accuracy
  • Citing Conference Paper
  • April 2017

... The segmentation of recorded material into sentence level was done. Laurinciukaite et al. [57] developed continuous Lithuanian speech corpus, Lithuanian Radio News Version 1 (LRN1) of 20 h and 50 min and contained various level of annotation carried by two-stage process, methods as well as tools. Maskeliunas et al. [80] checked the accuracy of the SR of 10 Lithuanian digits with the help of speech recognizers of English, German, French and Spanish. ...

LITHUANIAN CONTINUOUS SPEECH CORPUS LRN 1: AN IMPROVEMENT
  • Citing Article
  • January 2009

Information Technology and Control

... In the last decades, quite considerable progress has been made in natural language processing, not only for the English language, but also for other, more complex languages [28]. It is important to develop a Information Technology and Control 2018/1/47 64 technology for a wide range of languages, even if they are spoken by smaller populations. ...

Accuracy of the Parsing of Lithuanian Simple Sentences
  • Citing Article
  • December 2014

Information Technology and Control

... In the first work the highest accuracy (98.16 %) was obtained when k-Nearest neighbors method was used with 15 nearest neighbors, in the second they have achieved 95 % accuracy by combining 4 different language recognizers. [13] proposes a method for features quality estimation that does not require recognition experiments and accelerate automatic speech recognition system development. The key component of method is usage of metrics right after front-end features computation. ...

Metrics Based Quality Estimation of Speech Recognition Features
  • Citing Article
  • January 2013

Informatica

... Validation of the speech corpus was performed when running speech recognition experiments using data from LRN0 corpus -the prototype of LRN 0.1 [16,6,17,8]. When running experiments, multiple errors (various typos, missing elements) were found and fixed. ...

A Technique for Choosing Efficient Acoustic Modeling Units for Lithuanian Continuous Speech Recognition