Kylee D. Dunham’s research while affiliated with University of Alberta and other places

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Publications (6)


A demographic survey of the Davis Strait polar bear subpopulation using physical and genetic capture‐recapture‐recovery sampling
  • Article
  • Full-text available

February 2024

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69 Reads

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2 Citations

Marine Mammal Science

Kylee D. Dunham

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David N. Koons

Conducting assessments to understand the effects of changing environmental conditions on polar bear ( Ursus maritimus ) demography has become increasingly important to inform management and conservation. Here, we combined physical (2005–2007) and genetic (2017–2018) mark‐recapture with harvest recovery data (2005–2018) to estimate demographic rates of the Davis Strait polar bear subpopulation and examine the possible effects of climate, dynamic ice habitat, and prey resources on survival. Large sample sizes (e.g., 2,513 marked animals) allowed us to estimate temporal variation in annual survival rates using multistate mark‐recapture‐recovery models. We did not detect statistically significant effects of climate, ice habitat, and prey during the 13‐year study. Estimated total abundance in 2006 was 2,190, credible interval (CRI) [1,954, 2,454] and 1,944, CRI [1,593, 2,366] in 2018. Geometric mean population growth rate (0.99, 95% CRI [0.97, 1.01]) indicated the subpopulation may have declined slightly between 2006 and 2018. However, we did not detect a declining trend in survival or substantial change in reproductive metrics over this period. Given forecasts of major environmental change we emphasize the need to review monitoring programs for this subpopulation.

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Richness of species consumed by cats (Felis catus) around the world
Number of publications describing species consumed by cats over time (A) and species richness of fauna identified with an increasing number of studies (B, C). Species accumulation curve generated for the whole data set (B), a subset of data for studies conducted on islands and continents (C), and for a subset from the two continents with the highest number of studies (D). Species accumulation curves include the mean (bold line) and 95% confidence intervals (shaded band). Cat icon is from http://phylopic.org and is available in the public domain.
Taxonomic patterns of species consumed by cats (Felis catus)
Taxonomy of the diet from an exhaustive review of cat diet studies globally (A) and by closest continent to the study area (B). The “Other” category consisted primarily of invertebrates, including, but not limited to, Arachnida, Malacostraca, Chilopoda, and Gastropoda. The numbers above each column (B) refer to the number of species identified on each continent. We note that these numbers do not sum to the total number of unique species identified globally because many species were identified on multiple continents.
Classification of species consumed by cats (Felis catus) as designated by IUCN
Percent of species within each IUCN category identified in our review of cat diet studies globally (A) and by closest continent to the study area (B). The numbers above each column (B) refer to the number of species identified on each continent. We note that these numbers do not sum to the total number of unique species identified globally because many species were identified on multiple continents.
Distributions of body masses of species consumed by cats (Felis catus)
Density ridge plot of Log10 body mass (g) for amphibian, bird, mammal, and reptile species identified as being consumed by cats. The white filled distributions refer to the total distribution of known masses for species within each taxonomic class. The color filled distributions were generated from the recorded body masses of species identified in our database as being consumed by cats. Black lines below each distribution are the individual data points of the species observed in our database. Solid vertical black lines represent the median mass for the species observed in our database and dashed vertical black lines represent the median mass for all of the known species within each taxonomic class. Species silhouettes represent the smallest and largest species consumed by cats. Species icons are from http://phylopic.org and available in the public domain or licensed under CC BY 3.0 (Emu [Dromaius] by Darren Naish, vectorize by T. Michael Keesey).
A global synthesis and assessment of free-ranging domestic cat diet

December 2023

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649 Reads

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38 Citations

Free-ranging cats (Felis catus) are globally distributed invasive carnivores that markedly impact biodiversity. Here, to evaluate the potential threat of cats, we develop a comprehensive global assessment of species consumed by cats. We identify 2,084 species eaten by cats, of which 347 (16.65%) are of conservation concern. Islands contain threefold more species of conservation concern eaten by cats than continents do. Birds, reptiles, and mammals constitute ~90% of species consumed, with insects and amphibians being less frequent. Approximately 9% of known birds, 6% of known mammals, and 4% of known reptile species are identified in cat diets. 97% of species consumed are <5 kg in adult body mass, though much larger species are also eaten. The species accumulation curves are not asymptotic, indicating that our estimates are conservative. Our results demonstrate that cats are extreme generalist predators, which is critical for understanding their impact on ecological systems and developing management solutions.



Hidden in plain sight: Integrated population models to resolve partially observable latent population structure

December 2022

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269 Reads

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1 Citation

Population models often require detailed information on sex-, age-, or size-specific abundances, but population monitoring programs cannot always acquire data at the desired resolution. Thus, state uncertainty in monitoring data can potentially limit the demographic resolution of management decisions, which may be particularly problematic for stage-or size-structured species subject to consumptive use. American alligators (Alligator mississippiensis; hereafter alligator) have a complex life history characterized by delayed maturity and slow somatic growth, which makes the species particularly sensitive to overharvest. Though alligator populations are subject to recreational harvest throughout their range, the most widely used monitoring method (nightlight surveys) is often unable to obtain size class-specific counts, which limits the ability of managers to evaluate the effects of harvest policies. We constructed a Bayesian integrated population model (IPM) for alligators in Georgetown County, SC, USA, using records of mark-recapture-recovery, clutch size, harvest, and nightlight survey counts collected locally, and auxiliary information on fecundity, sex ratio, and somatic growth from other studies. We created a multistate mark-recapture-recovery model with six size classes to estimate survival probability, and we linked it to a state-space count model to derive estimates of size class-specific detection probability and abundance. Because we worked from a count dataset in which 60% of the original observations were of unknown size, we treated size class as a latent property of detections and developed a novel observation model to make use of information where size could be partly observed. Detection probability was positively associated with alligator size and water temperature, and negatively influenced by water level. Survival probability was lowest in the smallest size class but was relatively similar among the other five size classes (>0.


Demographic responses to climate change in a threatened Arctic species

July 2021

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138 Reads

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6 Citations

The Arctic is undergoing rapid and accelerating change in response to global warming, altering biodiversity patterns, and ecosystem function across the region. For Arctic endemic species, our understanding of the consequences of such change remains limited. Spectacled eiders (Somateria fischeri), a large Arctic sea duck, use remote regions in the Bering Sea, Arctic Russia, and Alaska throughout the annual cycle making it difficult to conduct comprehensive surveys or demographic studies. Listed as Threatened under the U.S. Endangered Species Act, understanding the species response to climate change is critical for effective conservation policy and planning. Here, we developed an integrated population model to describe spectacled eider population dynamics using capture–mark–recapture, breeding population survey, nest survey, and environmental data collected between 1992 and 2014. Our intent was to estimate abundance, population growth, and demographic rates, and quantify how changes in the environment influenced population dynamics. Abundance of spectacled eiders breeding in western Alaska has increased since listing in 1993 and responded more strongly to annual variation in first-year survival than adult survival or productivity. We found both adult survival and nest success were highest in years following intermediate sea ice conditions during the wintering period, and both demographic rates declined when sea ice conditions were above or below average. In recent years, sea ice extent has reached new record lows and has remained below average throughout the winter for multiple years in a row. Sea ice persistence is expected to further decline in the Bering Sea. Our results indicate spectacled eiders may be vulnerable to climate change and the increasingly variable sea ice conditions throughout their wintering range with potentially deleterious effects on population dynamics. Importantly, we identified that different demographic rates responded similarly to changes in sea ice conditions, emphasizing the need for integrated analyses to understand population dynamics.


Posterior estimates of abundance for spectacled eider populations breeding on the Arctic Coastal Plain (ACP) and Yukon-Kuskokwim Delta (YKD) of Alaska
We fit 2 alternative models for the ACP breeding population and four alternative models for the YKD breeding population. Models ACP1 and YKD1 included all available years of data between 2007 and 2019 and were initialized with ‘informative’ priors based on the species’ biology and expert opinion. Model YKD2 included all years of data between 2007 and 2019 and was initialized using noninformative priors. Model YKD3 was fit by excluding the 2015 population estimate and initializing the model with informative priors. Finally, models ACP2 and YKD4 allowed for a latent observation process and used informative priors to provide estimates of VCF variance and an observer effect. Gray circles represent the annual mean abundance and gray ribbons represent the 95% credible interval (CRI). The black dashed line is the population threshold of 12,000 breeding birds identified in the species recovery plan.
Loss functions and posterior distributions of population growth rate (r) generated from state-space models of abundance for spectacled eiders breeding on the Arctic Coastal Plain (ACP) and Yukon Kuskokwim Delta (YKD)
Loss functions were generated using the probability of quasi-extinction given population size, growth rate, and process variation. The dotted line represents the under-protection loss function (i.e., loss if decision were to delist given negative population growth) and the solid line is the over protection loss function (i.e., loss if the decision were to maintain status given positive population growth). Gray distributions show the posterior density of population growth rate (r) estimated by a Bayesian state-space model for the time series from 2007 to 2019. As part of the recovery criteria, spectacled eiders will be considered for delisting if overprotection (value in solid line box) is greater than underprotection (value in dashed line box). Greater overprotection error indicates that we are more likely to provide too much protection to the species than we are to provide too little protection to the species.
Detection adjusted abundance estimates for Alaskan breeding populations of spectacled eiders (Somateria fischeri) from 2007 to 2019 provided as data (yt^, the mean observed number of breeding birds and σyt^, the estimated standard error for the number of breeding birds) in the observation model
Model descriptions, parameters, and prior distributions used to model population dynamics of spectacled eiders (Somateria fischeri) breeding on the Arctic Coastal Plain (ACP) and Yukon-Kuskokwim Delta (YKD)
Posterior estimates of population metrics and misclassification error for both Alaskan breeding populations of spectacled eiders (Somateria fischeri)
Assessing recovery of spectacled eiders using a Bayesian decision analysis

July 2021

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50 Reads

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4 Citations

Assessing species status and making classification decisions under the Endangered Species Act is a critical step towards effective species conservation. However, classification decisions are liable to two errors: i) failing to classify a species as threatened or endangered that should be classified (underprotection), or ii) classifying a species as threatened or endangered when it is not warranted (overprotection). Recent surveys indicate threatened spectacled eider populations are increasing in western Alaska, prompting the U.S. Fish and Wildlife Service to reconsider the federal listing status. There are multiple criteria set for assessing spectacled eider status, and here we focus on the abundance and decision analysis criteria. We estimated population metrics using state-space models for Alaskan breeding populations of spectacled eiders. We projected abundance over 50 years using posterior estimates of abundance and process variation to estimate the probability of quasi-extinction. The decision analysis maps the risk of quasi-extinction to the loss associated with making a misclassification error (i.e., underprotection) through a loss function. Our results indicate that the Yukon Kuskokwim Delta breeding population in western Alaska has met the recovery criteria but the Arctic Coastal Plain population in northern Alaska has not. The methods employed here provide an example of accounting for uncertainty and incorporating value judgements in such a way that the decision-makers may understand the risk of committing a misclassification error. Incorporating the abundance threshold and decision analysis in the reclassification criteria greatly increases the transparency and defensibility of the classification decision, a critical aspect for making effective decisions about species management and conservation.

Citations (6)


... An updated analysis estimated 1400 individuals in 1993 and 2150 in 2013; three genetic groups were identified (i.e., north, central, and south) that differed in survival and reproduction rates, with higher rates in the south, possibly because of greater access to harp seals (Stirling and Taylor 1999;Peacock et al. 2013). More recently, declining body condition and low reproductive rates of DS polar bears were associated with either density-dependent effects or climate change impacts (Peacock et al. 2013) and abundance may have declined between 2006 and 2018, resulting in just under 2000 individuals (Dunham et al. 2024). Changing sea ice conditions may be influencing DS polar bears as the ice-cover period in DS declined by 17.1 days/decade between 1979 and 2014 (Stern and Laidre 2016). ...

Reference:

Space use of polar bears (Ursus maritimus) in Davis Strait in relation to sea ice and harp seals (Pagophilus groenlandicus)
A demographic survey of the Davis Strait polar bear subpopulation using physical and genetic capture‐recapture‐recovery sampling

Marine Mammal Science

... extinction of 367 and 63 species, respectively, according to a meta-analysis comparing the impacts of invasive mammalian predators (Doherty et al. 2016). Their effects as predators are particularly apparent on oceanic islands, where high species endemism and poorly developed predator defence strategies can lead to severe declines and extinctions of native species Lepczyk et al. 2023). Endemic species are particularly vulnerable, as population size may not be robust enough to sustain predation by cats. ...

A global synthesis and assessment of free-ranging domestic cat diet

... We used the framework developed by Dunham et al. (2023) steps of the framework were to 1) define the true biological processes to assess (e.g., direction and magnitude of trend), 2) simulate the true biological process, 3) define monitoring scenarios (i.e., sampling scheme), 4) simulate data collection from each monitoring scenario for each instance of truth, 5) apply classification criteria to simulated data, and 6) calculate the proportion of correct classifications from simulations to evaluate the performance of monitoring scenarios of interest. We used occupancy as the state variable in the framework. ...

Strategic monitoring to minimize misclassification errors from conservation status assessments
  • Citing Article
  • October 2023

Biological Conservation

... The resulting male bias is then maintained through the juvenile-to-adult transition, resulting in broadly observed male skews in adult populations. A long-term mark recapture study in the same alligator population from which hatchlings in the 2020 and 2021 experiments originated suggest apparent survival rapidly increases in juveniles and small adults relative to hatchlings, but not in a way that differs by sex (Lawson et al., 2022). When taken together, available evidence suggests strong influences of incubation temperature on early-life fitness are likely sufficient to drive differences in survival to maturity, even if these temperature effects wane over time. ...

Hidden in plain sight: Integrated population models to resolve partially observable latent population structure

... Such spatial variations in the effect of environmental changes have generally been documented at large spatial scales (e.g., Descamps et al., 2019;Gaston et al., 2005;Rode et al., 2014;Sandvik et al., 2008) but it has been shown that even populations close to each other may have different responses to sea ice changes (Descamps & Ramírez, 2021). Unfortunately, empirical evidence linking sea ice and Arctic wildlife demography or population dynamics is still relatively scarce (but see Descamps & Ramírez, 2021;Dunham et al., 2021;McGeachy et al., 2024;Regehr et al., 2007;Sauser et al., 2023), and such inter-or intra-population variations in the response to sea ice reduction remain largely unknown. ...

Demographic responses to climate change in a threatened Arctic species

... The regions accounting for most of the waterfowl egg harvest were Y-K Delta Coast (56%), Bering Strait Mainland (16%), and Y-K Delta Inland (11%) (Fig 3B). Alaska abundance index [43,[53][54][55][56][57][58][59]: Abundance indices are heterogenous among species depending on the geographic area, demographic contingents (e.g., breeding, non-breeding, hatch-year birds), and populations represented in different estimates as well as whether estimates are corrected for incomplete detection. Additional information for population data is available in S1 Dataset. ...

Assessing recovery of spectacled eiders using a Bayesian decision analysis