Kristin M K Halbert’s research while affiliated with University of Hawaiʻi at Mānoa and other places

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Table 1.  Summary of 522 specimens collected from 32 locations included in this study of the P. piseki – P. gracilis species complex.
Figure 1.  Distribution of sampling locations (red circles) and the frequency of individuals from different genetic clades in the Atlantic, Pacific, and Indian Oceans (pie charts), based on gDNA amplifications of mtCOII.
Total sample sizes (n) for each ocean region are given next to the pie charts. Clade colors are defined in figure 2. The cruise and station number for sample sites are listed next to the symbols (detail in Table 1).
Figure 2.  Bayesian phylogeny of 259 unique mtCOII haplotypes in the P. piseki- P. gracilis species complex (610-bp).
For clarity, five major clades are condensed into colored triangles on the tree (color as in Fig. 1). These 5 clades are shown in detail in figures 3 & 4. Bayesian posterior probability values are given above the branches, and bootstrap values from maximum likelihood (ML) analyses are given below the branches, when that node was supported in both Bayesian and ML analyses. Bold text indicates haplotypes that were sampled more than once. The tree is rooted, with Pareucalanus attenuatus defined as the outgroup (labeled PAAT; Calanoida, Eucalanidae). The scale bar is in units of substitutions per site (0.7). Shape symbols beside the haplotype identifiers indicate morphological traits of one or more specimens of that haplotype: triangle = P. piseki – like characters, circle = P. gracilis – like characters, square = ‘clade G – like’ characters (see Results for more detail). Morphological trait observations for major clades A, B, C, F, G are shown in figures 3 & 4.
Table 2.  Evolutionary divergence between major clades of the P. piseki–P. gracilis species complex.
Figure 3.  Bayesian mtCOII phylogeny of P. piseki – P. gracilis clade A, with sub-groups A1 and A2 as shown.
Bayesian posterior probability values are given above the branches, and bootstrap values from ML analysis are given below the branches, when that node was supported in both Bayesian and ML analyses. Bold text indicates haplotypes that were sampled more than once. The scale bar units are in substitutions per site. Sample identifiers begin with the ocean basin that individuals were sampled from, IO = Indian Ocean, NP = North Pacific, SP = South Pacific, NA = North Atlantic, SA = South Atlantic. Shape symbols indicate morphological traits, as defined in the legend.

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High Cryptic Diversity across the Global Range of the Migratory Planktonic Copepods Pleuromamma piseki and P. gracilis
  • Article
  • Full-text available

October 2013

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200 Reads

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37 Citations

Kristin M K Halbert

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David B Carlon

Although holoplankton are ocean drifters and exhibit high dispersal potential, a number of studies on single species are finding highly divergent genetic clades. These cryptic species complexes are important to discover and describe, as identification of common marine species is fundamental to understanding ecosystem dynamics. Here we investigate the global diversity within Pleuromamma piseki and P. gracilis, two dominant members of the migratory zooplankton assemblage in subtropical and tropical waters worldwide. Using DNA sequence data from the mitochondrial gene cytochrome c oxidase subunit II (mtCOII) from 522 specimens collected across the Pacific, Atlantic and Indian Oceans, we discover twelve well-resolved genetically distinct clades in this species complex (Bayesian posterior probabilities >0.7; 6.3-17% genetic divergence between clades). The morphologically described species P. piseki and P. gracilis did not form monophyletic groups, rather they were distributed throughout the phylogeny and sometimes co-occurred within well-resolved clades: this result suggests that morphological characters currently used for taxonomic identification of P. gracilis and P. piseki may be inaccurate as indicators of species' boundaries. Cryptic clades within the species complex ranged from being common to rare, and from cosmopolitan to highly restricted in distribution across the global ocean. These novel lineages appear to be ecologically divergent, with distinct biogeographic distributions across varied pelagic habitats. We hypothesize that these mtDNA lineages are distinct species and suggest that resolving their systematic status is important, given the ecological significance of the genus Pleuromamma in subtropical-tropical waters worldwide.

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Citations (1)


... Another critical limitation of morphological identification is the challenge posed by cryptic speciation in copepods 8,[23][24][25][26] . Cryptic species, which are morphologically similar but genetically distinct, may be overlooked, potentially leading to underestimations of biodiversity and misinterpretation of ecological patterns [27][28][29][30] . This was particularly evident in our study for closely related species pairs, such as Acartia hudsonica and A. omorii, where misidentification could result in incorrect ecological interpretations due to their differing habitat preferences. ...

Reference:

Integrating DNA metabarcoding and morphological analysis improves marine zooplankton biodiversity assessment
High Cryptic Diversity across the Global Range of the Migratory Planktonic Copepods Pleuromamma piseki and P. gracilis