Kevin Murphy’s research while affiliated with Cardiff University and other places

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Publications (118)


Figure 3: Scatter plot comparing bolus duration with CBF. Each point shows a data from a region in the Harvard-Oxford Cortical Atlas, averaged over all participants. Data for each vcutoff is shown by a different marker shape and the dashed horizontal line shows a bolus duration of 1.4 s. To inform the choice of LCT in future experimental design, the percentage of Harvard-Oxford Cortical Atlas regions (out of 48) for which bolus duration is below a range of values of LCT are reported in Table 2. Dropping from a LCT of 1.4 s to 1 s
Figure 5: The change in grey matter mean (a) bolus duration and (b) CBF with 5% CO2. Lines match participants' values in air and 5% CO2 breathing conditions and boxes show median and interquartile range across participants.
Percentage of the 48 Harvard-Oxford Cortical Atlas regions which have a bolus duration less than the labelling to vascular crushing delay time (LCT) for a range of LCT times and for each vcutoff value. Data is presented as median [interquartile range] % across participants.
Velocity-selective arterial spin labelling bolus duration measurements: Implications for consensus recommendations
  • Preprint
  • File available

May 2024

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43 Reads

Ian D Driver

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Michael Germuska

Velocity-selective arterial spin labelling (VSASL) MRI is insensitive to arterial transit time. This is an advantage over other perfusion measurements, where long arterial transit times can lead to bias. Therefore, VSASL can be used to study perfusion in the presence of long arterial transit times, such as in the ageing brain, in vascular pathologies, and cancer, or where arterial transit time changes, such as during measurement of cerebrovascular reactivity (CVR). However, when calculating perfusion (cerebral blood flow, CBF, in the brain) from VSASL signal, it is assumed that images are acquired before the trailing edge of the labelled blood has arrived in the imaging slice. The arrival of the trailing edge of the labelled bolus of blood will cause an underestimation of perfusion. Here we measure bolus duration in young, healthy human brains, both at rest and during elevated CBF. Grey matter bolus duration was 1.61 +/- 0.31 s, but there was a large spatial heterogeneity, with bolus duration being lower in anterior brain regions, with some areas having bolus duration < 1.2 s. We place these results in context of recommendations from a recent consensus paper, which recommends imaging 1.4 s after the label, potentially underestimating CBF in anterior regions. Further, we observed a 0.23 +/- 0.12 s reduction in grey matter bolus duration with 5% CO2 inhalation. These results can be used to inform the experimental design of future VSASL studies, to avoid underestimating perfusion by imaging after the arrival of the trailing edge of the labelled bolus.

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OP-07 Retinal and cortical vascular function across the menstrual cycle

Introduction Oestrogen has a protective effect against neurodegenerative conditions, including glaucoma and dementia. Animal models suggest that oestrogen has a vasodilatory effect, which is a possible mechanism for this. However, the full influence of oestrogen on specific cerebrovascular functions is unclear. Aims This study aims to investigate the influence of hormonal fluctuations across a healthy menstrual cycle on measures of retinal and cortical vascular functioning. Methods 27 menstruating participants (age mean[SD]=22.94[3.52] years) completed a testing session during the early-follicular, late-follicular, and mid-luteal phase of their menstrual cycle. Bloods were taken to measure circulating hormones.Retinal vasculature was assessed using a Swept-Source OCT (TOPCON healthcare), including: • Choroidal thickness – 6mm² OCT scan • Vessel density, radius, and resistance – 3mm² OCT Angiography Cortical data were acquired on a Siemens MAGNETOM Prisma 3T MRI scanner and include: • Grey matter Cerebral Blood Flow (CBF) and Arterial Arrival Time (AAT) – MPLD-pCASL scan • Global Oxygen Extraction Fraction (OEF) – TRUST sequence Linear models investigated the amount of variance explained by circulating oestradiol. Results Oestradiol significantly decreased retinal resistance (χ²(1)=6.1218, P=0.01335), an effect which was greatest in the foveal vessels. Other retinal measures were stable across the menstrual cycle. No association was found with OEF, but oestradiol did significantly increase CBF (χ²(1)=17.801; P=2.452e-5) and AAT (χ²(1)=9.5183; P=0.002034), which was a global effect. Conclusion Evidence for oestrogen’s vasodilatory influence was demonstrated across a menstrual cycle and in multiple vascular beds. This provides information into how oestrogen influences the cerebrovascular system and highlights possible mechanisms by which oestrogen has a protective effect against neurodegenerative conditions. Acknowledgements The Wellcome Trust (WT224267)


Figure 2. Group level contrast ( PwCF > Healthy Controls) for differences in regional greymatter CBF plotted as the t-statistic both uncorrected (a) and FDR corrected (b). The group level differences are plotted across the cortex (upper rows, sagittal) and subcortical regions (lower rows, coronal) separately.
Beta estimates (and standard error of estimate) for association between PwCF
Imaging brain vascular function in Cystic Fibrosis: an MRI study of cerebral blood flow and brain oxygenation

February 2024

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56 Reads

Cystic fibrosis (CF) is a progressive inherited disorder that primarily affects the lungs. With recent breakthroughs in effective treatments for CF that increase life-expectancy, a higher prevalence of age-related comorbidities have been reported including cardiovascular disease, stroke and cognitive decline. Despite the known relationship between cardiovascular health and cerebrovascular function, very little is known about brain blood flow and oxygen metabolism in patients with CF (PwCF). In 14 PwCF and 56 healthy age / sex matched controls, we used pseudo-continuous arterial spin labelling (pCASL) to quantify cerebral perfusion in grey-matter and T2-Relaxation-Under-Spin-Tagging (TRUST) to estimate global oxygen extraction fraction (OEF) and cerebral metabolic rate of oxygen consumption (CMRO2). Compared to healthy controls, PwCF showed elevated CMRO2 (p = 0.015). There were no significant between-group differences in grey-matter CBF (p = 0.342), or whole brain OEF (p = 0.091). However, regional analysis showed certain areas with higher CBF in PwCF (p < .05, FDR). This is the first study to characterise cerebrovascular function and brain oxygen metabolism in PwCF. Our findings highlight the need for early cardiovascular monitoring procedures to help maintain cerebrovascular function and combat accelerated aging effects in the brains of PwCF.


A Histogram represents the frequency of Alzheimer’s disease polygenic risk score (AD-PRS) estimated in 4504 participants as part of the PROTECT cohort. X-axis is standardised with a mean of zero and a standard deviation of 1. Grey bars reflect participants in the wider cohort, while blue and red horizontal lines represent the AD-PRS of individual participants in the present study. All participants had an AD-PRS at least 2 standard deviations over or under the cohort mean and were in the lowest (1) or highest (10) AD-PRS decile respectively. B Power (y-axis) is the proportion of significant associations from a simulated data set (from 1000 replicates), for an opportunistic sample (red line) and the recall-by-genotype sample (blue line). Crosses and black line intersections show power for our current sample (for recall-by-genotype; 85% power and opportunistic; 21% power) and the comparable sample size for the same power (NEFFECTIVE = 90). X-axis reflects sample size on a log10 scale
Cohen’s d ± 95% confidence intervals for the association between AD-PRS group and A SAM self-report assessment (adjusted for age and sex) and B average cortical thickness difference (averaged across hemisphere, adjusted for age, sex, and global cortical thickness). Significant, standardised mean differences highlighted in red; semantic, total SAM, and cingulate cortex survived correction for false discovery rate across comparisons (PFDR < 0.05)
Individual data points representing AD-PRS group differences for A total SAM adjusted for age, sex and B cingulate thickness (adjusted for age, sex, and global cortical thickness). C Positive association between adjusted SAM total and cingulate thickness. Grey shading reflecting 95% confidence interval for line of best fit
Within the cingulate cortex, the sub-region most associated was the right caudal anterior cingulate. The negative association between AD-PRS and right caudal anterior cingulate thickness in the recall-by-genotype (RbG) was replicated in the UK BioBank (UKBB) sample (N = 31,966). Y-axis represents beta estimates. Error bars represent 95% confidence intervals of the beta estimate
Proof-of-concept recall-by-genotype study of extremely low and high Alzheimer’s polygenic risk reveals autobiographical deficits and cingulate cortex correlates

December 2023

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59 Reads

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1 Citation

Alzheimer's Research & Therapy

Background Genome-wide association studies demonstrate that Alzheimer’s disease (AD) has a highly polygenic architecture, where thousands of independent genetic variants explain risk with high classification accuracy. This AD polygenic risk score (AD-PRS) has been previously linked to preclinical cognitive and neuroimaging features observed in asymptomatic individuals. However, shared variance between AD-PRS and neurocognitive features are small, suggesting limited preclinical utility. Methods Here, we recruited sixteen clinically asymptomatic individuals (mean age 67; range 58–76) with either extremely low / high AD-PRS (defined as at least 2 standard deviations from the wider sample mean (N = 4504; NEFFECTIVE = 90)) with comparable age sex and education level. We assessed group differences in autobiographical memory and T1-weighted structural neuroimaging features. Results We observed marked reductions in autobiographical recollection (Cohen’s d = − 1.66; PFDR = 0.014) and midline structure (cingulate) thickness (Cohen’s d = − 1.55, PFDR = 0.05), with no difference in hippocampal volume (P > 0.3). We further confirm the negative association between AD-PRS and cingulate thickness in a larger study with a comparable age (N = 31,966, β = − 0.002, P = 0.011), supporting the validity of our approach. Conclusions These observations conform with multiple streams of prior evidence suggesting alterations in cingulate structures may occur in individuals with higher AD genetic risk. We were able to use a genetically informed research design strategy that significantly improved the efficiency and power of the study. Thus, we further demonstrate that the recall-by-genotype of AD-PRS from wider samples is a promising approach for the detection, assessment, and intervention in specific individuals with increased AD genetic risk.



A mini-review of the evidence for cerebrovascular changes following gender-affirming hormone replacement therapy and a call for increased focus on cerebrovascular transgender health

November 2023

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36 Reads

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1 Citation

Gender-affirming hormone replacement therapy (gaHRT) is an important step for many in the gender diverse community, associated with increased quality-of-life and lower self-reported scores of depression and anxiety. However, considering the interactions that the involved sex hormones have on vasculature (with oestrogen and testosterone demonstrating vasodilatory and vasoconstricting properties, respectively), it is important for transgender healthcare research to examine how the manipulation of these hormones interact with cerebrovascular structure and functioning. There is a stark lack of research in this area. This mini-review outlines the research suggesting a vascular impact of these sex hormones using evidence from a range of cohorts (e.g., menopause, polycystic ovary syndrome) and discusses the work that has been done into cerebrovascular changes following gaHRT. Finally, recommendations for future research into cerebrovascular health in transgender cohorts following gaHRT are outlined.


Global cerebral blood flow (gCBF) at rest in males and females (a) and the relationship between peak oxygen uptake allometrically scaled to lean body mass (V̇O2max${\dot V_{{{\mathrm{O}}_{\mathrm{2}}}{\mathrm{max}}}}$) and global cerebral blood flow (gCBF; b) in pre‐ (blue circles) and post‐ (yellow triangles) PHV youth (Pre‐PHV Youth: R² = 0.00; P = 0.962. Post‐PHV Youth: R² = 0.19; P ≤ 0.001). P‐values within the figure plot indicate a significant difference between groups during post hoc comparisons.
The percentage change in internal carotid artery blood flow relative to the change in PETCO2${P_{{\mathrm{ETC}}{{\mathrm{O}}_{\mathrm{2}}}}}$ in males and females (steady‐state CVRCO2${\mathrm{CV}}{{\mathrm{R}}_{{\mathrm{C}}{{\mathrm{O}}_{\mathrm{2}}}}}$). P‐values within the figure plot indicate a significant difference between groups during post hoc comparisons.
The internal carotid artery blood flow mean response time (CVRCO2${\mathrm{CV}}{{\mathrm{R}}_{{\mathrm{C}}{{\mathrm{O}}_{\mathrm{2}}}}}$ MRT) in males and females during cerebrovascular reactivity to carbon dioxide (a) and the relationship between peak oxygen uptake allometrically scaled to lean body mass (V̇O2max${\dot V_{{{\mathrm{O}}_{\mathrm{2}}}{\mathrm{max}}}}$) and CVRCO2${\mathrm{CV}}{{\mathrm{R}}_{{\mathrm{C}}{{\mathrm{O}}_{\mathrm{2}}}}}$ MRT (b) in pre‐ (blue circles) and post‐ (yellow triangles) PHV youth (Pre‐PHV Youth: R² = 0.13; P = 0.014. Post‐PHV Youth: R² = 0.02; P = 0.406). P‐values within the figure plot indicate a significant difference between groups during post hoc comparisons.
Cerebral blood flow and cerebrovascular reactivity are modified by maturational stage and exercise training status during youth

September 2023

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123 Reads

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4 Citations

Global cerebral blood flow (gCBF) and cerebrovascular reactivity to hypercapnia (CVRCO2CVRCO2{\mathrm{CV}}{{\mathrm{R}}_{{\mathrm{C}}{{\mathrm{O}}_{\mathrm{2}}}}}) are modulated by gonadal hormone activity, while insulin‐like growth factor 1 facilitates exercise‐mediated cerebral angiogenesis in adults. Whether critical periods of heightened hormonal and neural development during puberty represent an opportunity to further enhance gCBF and CVRCO2CVRCO2{\mathrm{CV}}{{\mathrm{R}}_{{\mathrm{C}}{{\mathrm{O}}_{\mathrm{2}}}}} is currently unknown. Therefore, we used duplex ultrasound to assess gCBF and CVRCO2CVRCO2{\mathrm{CV}}{{\mathrm{R}}_{{\mathrm{C}}{{\mathrm{O}}_{\mathrm{2}}}}} in n = 128 adolescents characterised as endurance‐exercise trained (males: n = 30, females: n = 36) or untrained (males: n = 29, females: n = 33). Participants were further categorised as pre‐ (males: n = 35, females: n = 33) or post‐ (males: n = 24, females: n = 36) peak height velocity (PHV) to determine pubertal or ‘maturity’ status. Three‐factor ANOVA was used to identify main and interaction effects of maturity status, biological sex and training status on gCBF and CVRCO2CVRCO2{\mathrm{CV}}{{\mathrm{R}}_{{\mathrm{C}}{{\mathrm{O}}_{\mathrm{2}}}}}. Data are reported as group means (SD). Pre‐PHV youth demonstrated elevated gCBF and slower CVRCO2CVRCO2{\mathrm{CV}}{{\mathrm{R}}_{{\mathrm{C}}{{\mathrm{O}}_{\mathrm{2}}}}} mean response times than post‐PHV counterparts (both: P ≤ 0.001). gCBF was only elevated in post‐PHV trained males when compared to untrained counterparts (634 (43) vs. 578 (46) ml min⁻¹; P = 0.007). However, CVRCO2CVRCO2{\mathrm{CV}}{{\mathrm{R}}_{{\mathrm{C}}{{\mathrm{O}}_{\mathrm{2}}}}} mean response time was faster in pre‐ (72 (20) vs. 95 (29) s; P ≤ 0.001), but not post‐PHV (P = 0.721) trained youth when compared to untrained counterparts. Cardiorespiratory fitness was associated with gCBF in post‐PHV youth (r² = 0.19; P ≤ 0.001) and CVRCO2CVRCO2{\mathrm{CV}}{{\mathrm{R}}_{{\mathrm{C}}{{\mathrm{O}}_{\mathrm{2}}}}} mean response time in pre‐PHV youth (r² = 0.13; P = 0.014). Higher cardiorespiratory fitness during adolescence can elevate gCBF while exercise training during childhood primes the development of cerebrovascular function, highlighting the importance of exercise training during the early stages of life in shaping the cerebrovascular phenotype.



Steps on the Path to Clinical Translation: A workshop by the British and Irish Chapter of the ISMRM

The British and Irish Chapter of the International Society for Magnetic Resonance in Medicine (BIC‐ISMRM) held a workshop entitled “Steps on the path to clinical translation” in Cardiff, UK, on 7th September 2022. The aim of the workshop was to promote discussion within the MR community about the problems and potential solutions for translating quantitative MR (qMR) imaging and spectroscopic biomarkers into clinical application and drug studies. Invited speakers presented the perspectives of radiologists, radiographers, clinical physicists, vendors, imaging Contract/Clinical Research Organizations (CROs), open science networks, metrologists, imaging networks, and those developing consensus methods. A round‐table discussion was held in which workshop participants discussed a range of questions pertinent to clinical translation of qMR imaging and spectroscopic biomarkers. Each group summarized their findings via three main conclusions and three further questions. These questions were used as the basis of an online survey of the broader UK MR community.


Robust retrospective motion correction of head motion using navigator‐based and markerless motion tracking techniques

May 2023

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45 Reads

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2 Citations

Purpose This study investigated the artifacts arising from different types of head motion in brain MR images and how well these artifacts can be compensated using retrospective correction based on two different motion‐tracking techniques. Methods MPRAGE images were acquired using a 3 T MR scanner on a cohort of nine healthy participants. Subjects moved their head to generate circular motion (4 or 6 cycles/min), stepwise motion (small and large) and “simulated realistic” motion (nodding and slow diagonal motion), based on visual instructions. One MPRAGE scan without deliberate motion was always acquired as a “no motion” reference. Three dimensional fat‐navigator (FatNavs) and a Tracoline markerless device (TracInnovations) were used to obtain motion estimates and images were separately reconstructed retrospectively from the raw data based on these different motion estimates. Results Image quality was recovered from both motion tracking techniques in our stepwise and slow diagonal motion scenarios in almost all cases, with the apparent visual image quality comparable to the no‐motion case. FatNav‐based motion correction was further improved in the case of stepwise motion using a skull masking procedure to exclude non‐rigid motion of the neck from the co‐registration step. In the case of circular motion, both methods struggled to correct for all motion artifacts. Conclusion High image quality could be recovered in cases of stepwise and slow diagonal motion using both motion estimation techniques. The circular motion scenario led to more severe image artifacts that could not be fully compensated by the retrospective motion correction techniques used.


Citations (63)


... However, a recent recall-by-genotype study also reported an effect in this region in adults of the PROTECT cohort. 64 In summary, the fewer effects observed in childhood and early adulthood compared with those later in the life course may be due to developmental noise, or a greater effect of genetic variation on more biological pathways in older individuals. It is also possible that genetic effects become more pronounced later in the life course due to the accumulation of gene-environment interactions and/or potential epigenetic mechanisms. ...

Reference:

Genetics impact risk of Alzheimer’s disease through mechanisms modulating structural brain morphology in late life
Proof-of-concept recall-by-genotype study of extremely low and high Alzheimer’s polygenic risk reveals autobiographical deficits and cingulate cortex correlates

Alzheimer's Research & Therapy

... ; https://doi.org/10. 1101/2024 where rsf si denotes either the RSFA, ALFF, mALFF, or fALFF map of the ith participant during the sth session, cvr si denotes the corresponding CVR map, index s denotes the session, i denotes the subject, β 0 denotes the intercept, β 1 denotes the fixed effect of cvr si on rsf si , θ s and τ i denote random effects of sessions and individuals, and ε si denotes noise. Note that all values, both in the voxelwise and in the average GM case, were subject-centered (i.e. ...

Breath-hold BOLD fMRI without CO2 sampling enables estimation of venous cerebral blood volume: potential use in normalization of stimulus-evoked BOLD fMRI data
  • Citing Article
  • December 2023

NeuroImage

... By contrast, habitual exercise is associated with better emotional regulation strategies [26], greater inhibitory control [27], and greater resilience, strengthening self-regulation through top-down control of bottom-up processing [28]. Studies on young people suggest that high-intensity interval training (HIIT) could have more positive effects on cognitive performance and psychological outcomes [29], promoting higher levels of neurotrophic factors, such as brain-derived neurotrophic factors [30], synaptic plasticity [31], and increased cerebral blood flow [32]. Nonetheless, more studies on the intensity of PA among young people and its relationship with positive emotional and cognitive variables must be carried out. ...

Cerebral blood flow and cerebrovascular reactivity are modified by maturational stage and exercise training status during youth

... [4][5][6][7][8][9][10] A few studies using the UK biobank (a prospective population-based database of more than 500,000 individuals with extensive phenotypic and genetic data) have analyzed risk for all cause dementia in women, but the results regarding menopause are mixed. [11][12][13][14][15][16] Notably, none of these studies have focused solely on AD which is the type of dementia prevalent in women. ...

Menopause age, reproductive span and hormone therapy duration predict the volume of medial temporal lobe brain structures in postmenopausal women
  • Citing Article
  • September 2023

Psychoneuroendocrinology

... To reconstruct the missing lines, GRAPPA uses the auto-calibration signal (ACS) lines, which constitute the fully-sampled central region of a 3D FatNav volume collected prior to or during the main acquisition, with only a few seconds added to the scan total duration. Motion correction based on 3D FatNavs has been used to improve the image quality in MR images of the brain affected by non-deliberate motion [1,3] and by deliberate motion [4,5]. In [1], image sharpness was restored in high-resolution images by including the accelerated 3D FatNavs as part of an MP2RAGE and a TSE protocol with negligible increase in scanning time. ...

Robust retrospective motion correction of head motion using navigator‐based and markerless motion tracking techniques

... CVR has demonstrated clinical utility for a range of conditions including stroke (Papassin et al., 2021), carotid stenosis (Sobczyk et al., 2020), traumatic brain injury (Mathieu et al., 2020), Alzheimer's disease (Yezhuvath et al., 2012), and multiple sclerosis (Chiarelli et al., 2022). ...

Cerebrovascular reactivity in multiple sclerosis is restored with reduced inflammation during immunomodulation

... This suggests that other Alzheimer's disease risk genes may exert some of their effects via cerebrovascular mechanisms, in addition to Alzheimer's disease-speci c pathways. This interpretation is consistent with evidence linking higher AD-PRS scores to reductions in cerebral blood ow 122 and neuropathological markers of cerebrovascular disease, 34 though results might differ for PRS scores computed using other methodologies. Future studies that also include AD-biomarker assessments of amyloid and tau are needed to clarify how AD-PRS in uence neurodegeneration. ...

Alzheimer's genetic risk effects on cerebral blood flow across the lifespan are proximal to gene expression
  • Citing Article
  • August 2022

Neurobiology of Aging

... Moreover, terms such as "moderate pain" or "discomfort" may be more appropriate to describe the effect, given that in the many studies using this manoeuvre, only a few volunteers have been reported to drop out due to intolerance. For example, in a recent study by Whittaker et al. [33] that proposed an improved version of the MRI imaging protocol using the same thigh-cuff release (TCR) manoeuvre, incorporating new technology compatible with the MRI scanner that was not available to Horsfield et al. [13], it was reported that "All subjects tolerated the TCRchallenge, and none experienced any significant pain. Some mild discomfort was reported, but it was never severe enough for any subject to choose not to continue the experiment". ...

The Spatiotemporal Dynamics of Cerebral Autoregulation in Functional Magnetic Resonance Imaging

... Recent works applied deep learning (DL) to calibration techniques in UHF MRI, [27][28][29][30][31][32][33][34][35][36] particularly to acquire B 1 + -fields more rapidly. [34][35][36] Eberhardt et al. 36 accelerated channel-wise B 1 + -mapping for the brain at 7 T, acquiring data for only a fraction of Tx-channels, while the remaining channels were estimated using DL. ...

Rigid motion‐resolved B1+ prediction using deep learning for real‐time parallel‐transmission pulse design

... Arterial spin labeling was a functional MRI technology for measuring tissue perfusion to quantify the cerebral blood flow (CBF) in a given period with high time resolution (Rostami et al., 2014). There is a hypothesis proposing that insufficient CBF increases the risk of developing LOAD, leads to the decline of consciousness and dysfunction of LOAD, and even can be treated as an early antecedent of LOAD (Chandler et al., 2021). AD-PRS was found to be negatively correlated with CBF on many brain regions across the younger and older participants, including the frontal pole, middle frontal gyrus, inferior frontal gyrus, insular, frontal medial cortex, and orbitofrontal cortex (Chandler et al., 2019(Chandler et al., , 2021. ...

Alzheimer's genetic risk effects on cerebral blood flow are spatially consistent and proximal to gene expression across the lifespan