Kenneth D Poss’s research while affiliated with Duke University Medical Center and other places

What is this page?


This page lists works of an author who doesn't have a ResearchGate profile or hasn't added the works to their profile yet. It is automatically generated from public (personal) data to further our legitimate goal of comprehensive and accurate scientific recordkeeping. If you are this author and want this page removed, please let us know.

Publications (177)


Phased ERK responsiveness and developmental robustness regulate teleost skin morphogenesis
  • Article

March 2025

·

3 Reads

Proceedings of the National Academy of Sciences

Nitya Ramkumar

·

Christian Richardson

·

Makinnon O'Brien

·

[...]

·

Stefano Di Talia

Elongation of the vertebrate embryonic axis necessitates rapid expansion of the epidermis to accommodate the growth of underlying tissues. Here, we generated a toolkit to visualize and quantify signaling in entire cell populations of the periderm, the outermost layer of the epidermis, in live developing zebrafish. We find that oriented cell divisions facilitate growth of the early periderm during axial elongation rather than cell addition from the basal layer. Activity levels of Extracellular signal-regulated kinase (ERK), a downstream effector of the MAPK pathway, gauged by a live biosensor, predict cell cycle entry, and optogenetic ERK activation regulates cell cycling dynamics. As development proceeds, rates of peridermal cell proliferation decrease, and ERK activity becomes more pulsatile and functionally transitions to promote hypertrophic cell growth. Targeted genetic blockade of cell division generates animals with oversized periderm cells, yet, unexpectedly, development to adulthood is not impaired. Our findings reveal stage-dependent differential responsiveness to ERK signaling and marked developmental robustness in growing teleost skin.


Figure 2. Erk activity encodes the probability of cell cycling A) Representative image of a ray from a fish expressing osx:H2A-mCherry treated with control DMSO (top) or MEK inhibitor (PD03, bottom). Scale bar is 250 í µí¼‡í µí±š. B) Quantification of change in length of osteoblast tissue following 24 hours of treatment with a MEK inhibitor (PD03). (Data are from 9/12 untreated fish/rays and 10/14 treated fish/rays. Two sample t-test was used to test for significant difference.) C) Representative image of a ray from a fish expressing osx:Venus-Geminin treated with control DMSO (top) or MEK inhibitor (PD03, bottom). Scale bar is 250 í µí¼‡í µí±š. D) Quantification of the number of osteoblasts cycling (as scored by Venus-Geminin expression) before and after MEK inhibition. Black dots and lines in indicate average values. (Data are from 8/11 untreated fish/rays and 10/14 treated fish/rays. Paired t-test was used to test for significant difference.) E) Schematic describing the biosensor used to measure Erk activity in regenerating osteoblasts. F) Representative images of regenerating rays with large (proximal) and small (distal) lengths amputated expressing the Erk biosensor (top), Venus-Geminin (bottom), and Histone2A-mCherry (not shown) in osteoblasts. Heatmap (middle) has Erk activity values for individual osteoblasts plotted onto the nuclei of those osteoblasts, as segmented on the Histone2A-mCherry channel. Color indicates single-cell Erk activity level. Scale bars are 250 í µí¼‡í µí±š. G) Quantification of the relationship between fraction of osteoblasts cycling and average Erk activity. Each dot represents a spatial bin occupying 1/10 th of the regenerate's proximodistal axis, time averaged over a 24 hour window. (See methods and Supplemental Figure 1F.) Color indicates length amputated. Black line represents binned average of all data. Red lines represent binned average of aggregated large, medium, and small length amputated data. (Data are from 1869 regions/20 fish/55 rays.)
Figure 3. Whole-regenerate averaged Erk activity explains regenerative outgrowth A) Representative heatmaps of Erk activity in regenerating rays throughout the first 2 weeks of regeneration from proximal (left) and distal (right) amputations. B) Quantification of regenerate length over time for all analyzed rays. Lines connect data points from the same ray. Coloring indicates length amputated. Data are from 60 rays from 22 fish. C) Whole ray average Erk activity versus fraction regeneration (Length Regenerated / Length Amputated). Each dot represents a single ray at a single time point, colored according to length amputated. Red lines indicate fits to data sub-grouped by amputation length. Black line indicates fit to all data. Data are from 60 rays from 22 fish.
Figure 4. Erk activity is patterned in scaling gradients that span the entire regenerate and encode proliferation across space A) Representative images of Erk activity heatmaps for regenerating rays with proximal (left) or distal (right) amputations, imaged every 12 hours from 5 to 7 days post amputation. B) Quantification of Erk activity along the proximodistal axis the regenerating rays shown in Figure 4A. Amputation site is plotted at 0 on x-axis. Each dot represents the average Erk activity of cells within a spatial bin. Lines connect points from the same ray at a given time. Coloring indicates time post amputation. C) Quantification of normalized average Erk activity (Binned Average Erk Activity / Whole Ray Average Erk Activity) versus normalized position along the proximodistal axis (position / Length Regenerated). Each red line represents the average spatial Erk Activity profile of a group of rays with the indicate lengths amputated. Black line represents the average spatial Erk activity profile for all rays analyzed. Data are from 52 rays from 20 fish. D) Quantification shown in Figure 4C with data grouped by time post amputation instead of length amputated. Data are from 52 rays from 20 fish. E) Representative spatiotemporal profile of Erk Activity throughout the course of osteoblast regeneration. Each line represents the average spatial Erk Activity profile for rays of the indicated fraction regenerated. All rays were first divided into 10 equal spatial bins and binned average Erk activity was calculated for each spatial bin. These binned values were then averaged for each spatial position across all rays in a given phi group. Each curve was plotted as a function of normalized position in a region spanning from the amputation plane to the median phi value of a given phi group. F) Comparison of the fin ray growth dynamics predicted by our quantitative model (lines) versus an independent experimental characterization of ray growth dynamics (open circles). Colors indicate length amputated.
Figure 5. Erk dynamics can explain regenerative growth dynamics of longfin mutants A,B) Representative images of regenerating wildtype (A) and lof (B) fins before (left) and after (right) amputation. Red dotted line indicates fin shape before amputation. C) Representative Erk activity heatmaps and images of Venus-Geminin expression in a single regenerating lof ray over the first three weeks of regeneration. D) Comparison of the relationship between Binned Erk Activity and Fraction Osteoblasts Cycling (as scored by Venus-Geminin expression) in wildtype (black) and lof (red) fish. LOF data are from 29 rays from 7 fish. WT data are from 60 rays from 20 fish. E) Spatial Erk activity profiles of lof rays, as in Figure 4C. Individual rays were grouped into 5 groups based on their length amputated. The average spatial Erk Activity profile of each group is shown in red. The average spatial Erk Activity profile of all rays is shown in black. Data are from 36 rays from 9 fish. F) Quantification of whole ray average Erk activity versus fraction regenerated (length regenerated / length amputated). Each dot represents a single ray at a single time point, colored by length amputated. Lines indicate fits to data from individual rays throughout regeneration. Data are from 36 rays from 9 fish. G) Quantification of whole ray average Erk activity (as in Figure 5F) versus actual fraction regenerated (length regenerated / final regenerated length measured). Each dot represents a single ray at a single time point, colored by length amputated. Black line indicates fit to all data. Data are from 36 rays from 9 fish.
Figure 6. Long-range Erk activity gradients require Fgf signaling and likely form by tissue expansion-induced advection A) Representative images of regenerating rays of fish expressing osterix:H2A-mCherry treated with DMSO (top) or a pan-FGF receptor inhibitor (BGJ, bottom) for 24 hours. B, C, D) Quantification of Erk activity (B), number of cells expressing Venus-Geminin (C), and tissue growth (D) in DMSO and pan-Fgf receptor inhibited (BGJ-treated) fish. Black dots and lines in (B & C) indicate average values. Data are from: B -11 untreated rays from 7 untreated fish & 8 BGJ-treated rays from 6 BGJtreated fish. C&D -12 untreated rays from 8 untreated fish & 9 BGJ-treated rays from 7 BGJtreated fish. E) Bulk RNA sequencing of FGF ligand expression at the tip (dark bars) and amputation site (light bars) at 0, 3.5, 7, and 14 days post amputation. See methods for details. F) Predicted ligand-producing source dynamics derived from theoretical model using 96 hour ligand lifetime. Color indicates time. G) Comparison of computationally predicted and experimentally observed spatiotemporal profile of Erk Activity throughout the course of osteoblast regeneration. Experimental data (circles) are repeated from figure 4E. Simulated data are shown in lines.
Decaying and expanding Erk gradients process memory of skeletal size during zebrafish fin regeneration
  • Preprint
  • File available

January 2025

·

13 Reads

Regeneration of an amputated salamander limb or fish fin restores pre-injury size and structure, illustrating the phenomenon of positional memory. Although appreciated for centuries, the identity of position-dependent cues and how they control tissue growth are not resolved. Here, we quantify Erk signaling events in whole populations of osteoblasts during zebrafish fin regeneration. We find that osteoblast Erk activity is dependent on Fgf receptor signaling and organized into millimeter-long gradients that extend from the distal tip to the amputation site. Erk activity scales with the amount of tissue amputated, predicts the likelihood of osteoblast cycling, and predicts the size of regenerated skeletal structures. Mathematical modeling suggests gradients are established by the transient deposition of long-lived ligands that are transported by tissue growth. This concept is supported by the observed scaling of expression of the essential epidermal ligand fgf20a with extents of amputation. Our work provides evidence that localized, scaled expression of pro-regenerative ligands instructs long-range signaling and cycling to control skeletal size in regenerating appendages.

Download


Phased ERK-responsiveness and developmental robustness regulate teleost skin morphogenesis

May 2024

·

5 Reads

Elongation of the vertebrate embryonic axis necessitates rapid expansion of the epidermis to accommodate the growth of underlying tissues. Here, we generated a toolkit to visualize and quantify signaling in entire cell populations of periderm, the outermost layer of the epidermis, in live developing zebrafish. We find that oriented cell divisions facilitate growth of the early periderm during axial elongation rather than cell addition from the basal layer. Activity levels of ERK, a downstream effector of MAPK pathway, gauged by a live biosensor, predicts cell cycle entry, and optogenetic ERK activation controls proliferation dynamics. As development proceeds, rates of peridermal cell proliferation decrease, ERK activity becomes more pulsatile and functionally transitions to promote hypertrophic cell growth. Targeted genetic blockade of cell division generates animals with oversized periderm cells, yet, unexpectedly, development to adulthood is not impaired. Our findings reveal stage-dependent differential responsiveness to ERK signaling and marked developmental robustness in growing teleost skin.




Inter-organ communication during tissue regeneration

November 2023

·

41 Reads

·

15 Citations

Development

Tissue regeneration is not simply a local repair event occurring in isolation from the distant, uninjured parts of the body. Rather, evidence indicates that regeneration is a whole-animal process involving coordinated interactions between different organ systems. Here, we review recent studies that reveal how remote uninjured tissues and organ systems respond to and engage in regeneration. We also discuss the need for toolkits and technological advancements to uncover and dissect organ communication during regeneration.


In toto imaging of glial JNK signaling during larval zebrafish spinal cord regeneration

November 2023

·

33 Reads

·

1 Citation

Development

Identification of signaling events that contribute to innate spinal cord regeneration in zebrafish can inform new targets for modulating injury responses of the mammalian central nervous system. Using a chemical screen, we identify JNK signaling as a necessary regulator of glial cell cycling and tissue bridging during spinal cord regeneration in larval zebrafish. With a kinase translocation reporter, we visualize and quantify JNK signaling dynamics at single-cell resolution in glial cell populations in developing larvae and during injury-induced regeneration. Glial JNK signaling is patterned in time and space during development and regeneration, decreasing globally as the tissue matures and increasing in the rostral cord stump upon transection injury. Thus, dynamic and regional regulation of JNK signaling help to direct glial cell behaviors during innate spinal cord regeneration.



Spinal cord repair is modulated by the neurogenic factor Hb-egf under direction of a regeneration-associated enhancer

August 2023

·

143 Reads

·

15 Citations

Unlike adult mammals, zebrafish regenerate spinal cord tissue and recover locomotor ability after a paralyzing injury. Here, we find that ependymal cells in zebrafish spinal cords produce the neurogenic factor Hb-egfa upon transection injury. Animals with hb-egfa mutations display defective swim capacity, axon crossing, and tissue bridging after spinal cord transection, associated with disrupted indicators of neuron production. Local recombinant human HB-EGF delivery alters ependymal cell cycling and tissue bridging, enhancing functional regeneration. Epigenetic profiling reveals a tissue regeneration enhancer element (TREE) linked to hb-egfa that directs gene expression in spinal cord injuries. Systemically delivered recombinant AAVs containing this zebrafish TREE target gene expression to crush injuries of neonatal, but not adult, murine spinal cords. Moreover, enhancer-based HB-EGF delivery by AAV administration improves axon densities after crush injury in neonatal cords. Our results identify Hb-egf as a neurogenic factor necessary for innate spinal cord regeneration and suggest strategies to improve spinal cord repair in mammals.


Citations (73)


... The thorough manual analysis of the DEG at 1 and 2 dpa (both up and down combined) confirmed and extended this tendency. Genes related to inflammation, immune system, redox signaling and stress, processes well known to be involved in the early steps of regeneration [32,[38][39][40] are prominent. Importantly, one fifth of DEG are related to nervous system, more specifically to axon connections or neurite outgrowths regulation, consistent with the acetylated tubulin aberrant phenotype (Fig. 2G, H). ...

Reference:

Multifaceted conserved functions of Notch during post-embryonic neurogenesis in the annelid Platynereis
Hallmarks of regeneration
  • Citing Article
  • August 2024

Cell Stem Cell

... The proportions of the human body, including the size and relative proportions of different organs, are primarily determined by a combination of genetic factors [1] and biological signaling pathways during growth, development and regeneration [2,3]. Genes play a critical role in determining how organs develop and maintain proper proportions relative to one another. ...

Inter-organ communication during tissue regeneration
  • Citing Article
  • November 2023

Development

... The water temperature was approximately 28 • C, with a pH of around 7.2, and conductivity of approximately 500 µS/cm. Embryos were obtained through natural mating and cultured at 28.5 • C. The knock-in, transgenic and knockout strains used in this study were pcna mGFP,pd392 [29], Tg(myl7:H2A-mCherry) sd12 [30], and Tg(myl7:cpt1b-TBFP) hs3 (this study) and cpt1b hs4 (this study). ...

In toto imaging of glial JNK signaling during larval zebrafish spinal cord regeneration
  • Citing Article
  • November 2023

Development

... 13 that Erk signaling facilitates whole body regeneration, and that waves of Erk are transmitted via muscle in the animal's body wall 135,136 . Interestingly, in zebrafish scale regeneration Erk signaling has also been found to play a key role; however in this case they found waves of Erk travel in concentric rings across the regenerating scales [137][138][139] . Fascinating work in mammals has found Erk signaling also plays a key role in response to injury. ...

Regeneration: Signaling superhighways
  • Citing Article
  • September 2023

Current Biology

... Neurodegeneration leading to a loss of neurons could be counteracted by the regeneration of lost neuronal cells. Since zebrafish have a pronounced regenerative capacity of neuronal structures [154,155], neurodegeneration models could not only serve to study the etiology of these diseases, but also to investigate regenerative responses to progressive neurodegeneration. The cerebellum of this bony fish holds an extraordinary regenerative capability. ...

Spinal cord repair is modulated by the neurogenic factor Hb-egf under direction of a regeneration-associated enhancer

... An example where this may be useful is for staining axonal and glial bridges/compartments (Figure 4), often evaluated in zebrafish SC regeneration projects. 16,17 Both antibodies work and recognize the targeted proteins after clearing reversion, in both transversal and longitudinal sections. Despite this, protocol optimizations might be needed for the transversal sections to ensure a homogeneous distribution of the staining throughout the SC section (e.g., more permeabilization and/or increase antibody concentration), as observed in the longitudinal ones. ...

Progenitor derived glia are required for spinal cord regeneration in zebrafish
  • Citing Article
  • May 2023

Development

... A delivery system delivers therapeutic agents to specific tissues and cells, improving the site-specific localization of the principal drugs with enhanced therapeutic outcomes and decreasing systemic side effects. As information about regenerative mechanisms grows, technologies must be developed to transform these discoveries into clinical practice, where they can be accessible to patients with unmet needs [7,8]. ...

An enhancer-based gene-therapy strategy for spatiotemporal control of cargoes during tissue repair
  • Citing Article
  • December 2022

Cell Stem Cell

... The chosen network architecture strikes a balance between being small enough to train rapidly from scratch on a laptop, while being large enough to generate valid segmentation on nontrivial problems. The choice of a CNN has been the standard for segmentation problems 6,12,14,18,20,[22][23][24][25][26] , as it allows the network natural access The network consists of two 3 × 3 convolutional layers followed by a 2 × 2 max pooling layer. This pattern is repeated twice more, each with skip connections as shown. ...

DeepProjection: Specific and robust projection of curved 2D tissue sheets from 3D microscopy using deep learning

Development

... These results provide the basis for a mechanism explaining this observed temporal coordination of ERK signaling. In Xenopus laevis and Danio rerio, ion channels and gap junctions contribute to patterning and development suggesting that mechanisms controlling BMP ligand release could be further conserved 25,31,[76][77][78] . Work from the Taneyhill laboratory supports the hypothesis that gap junctions between cranial neural crest cells are important for craniofacial development 79,80 . ...

Voltage-gated sodium channel scn8a is required for innervation and regeneration of amputated adult zebrafish fins

Proceedings of the National Academy of Sciences

... In addition, endocardial cells (bcam), erythrocytes (hbba1), epicardial cells (tbx18), and pericytes (pdgfrb) were identified (Supplementary Fig. 1C, D). These marker genes for these populations have been previously used to define these cell types in regenerating adult zebrafish hearts [15,23,[25][26][27][28]. In this study, four CM populations were identified on the basis of the expression of sorbs2b, ttn.2, ryr2b, myh7ba, and ldb3a (Fig. 1C, D and Supplementary Figure 1C, D). ...

hapln1 Defines an Epicardial Cell Subpopulation Required for Cardiomyocyte Expansion During Heart Morphogenesis and Regeneration
  • Citing Article
  • June 2022

Circulation