April 2025
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28 Reads
European Journal of Human Genetics
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April 2025
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28 Reads
European Journal of Human Genetics
April 2025
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44 Reads
The Lancet Neurology
March 2025
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192 Reads
npj Parkinson s Disease
LRRK2 -PD represents the most common form of autosomal dominant Parkinson’s disease. We identified the LRRK2 p.L1795F variant in three families and six additional unrelated cases using genetic data from over 50,000 individuals. Carriers with available genotyping data shared a common haplotype. The clinical presentation resembles other LRRK2 -PD forms. Combined with published functional evidence showing strongly enhanced LRRK2 kinase activity, we provide evidence that LRRK2 p.L1795F is pathogenic.
March 2025
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61 Reads
While genetic causes are identified in up to 15% of all Parkinson's disease (PD) patients, the remaining idiopathic PD (iPD) patients are attributed to polygenic risk, environmental and lifestyle factors, and interactions thereof. We applied five advanced polygenic score (PGS) tools to data from 1,762 iPD patients and 4,227 healthy controls of European ancestry, resulting in the development of a novel iPD-PGS with significantly improved discriminative performance compared to existing models with an AUC of 0.680 (95% confidence interval (-CI): [0.665, 0.695]). Validation in independent cohorts confirmed its robustness. Notably, patients with early-onset iPD exhibited markedly high PGS values when compared to late-onset iPD patients and healthy controls, underlining the high polygenetic burden in these individuals. We subsequently applied our novel iPD-PGS to carriers of heterozygous PRKN variants and GBA1 coding risk variants. In both cases, our findings suggest that part of the penetrance in these genetic forms of PD can be explained by the same polygenic alterations as observed mitigating iPD. The discriminative potential was greater for GBA1 than for PRKN (GBA1: AUC=0.639, 95%-CI=[0.590, 0.687], PRKN: AUC=0.594, 95%-CI=[0.501, 0.687]). Our study highlights the potential of advanced PGSs in PD research, particularly for understanding varying penetrance in genetic PD and identifying high-risk individuals.
March 2025
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40 Reads
Parkinsonism & Related Disorders
February 2025
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53 Reads
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1 Citation
npj Parkinson s Disease
LRRK2 -related Parkinson’s disease ( LRRK2 -PD) is the most frequent form of monogenic PD worldwide, with important therapeutic opportunities, exemplified by the advancement in LRRK2 kinase inhibition studies/trials. However, many LRRK2 variants, especially those found in underrepresented populations, remain classified as variants of uncertain significance (VUS). Leveraging on Malaysian, Singaporean, and mainland Chinese PD datasets ( n = 4901), we describe 12 Chinese-ancestry patients harboring the LRRK2 p.Arg1067Gln variant, more than doubling the number of previously reported cases (total n = 23, 87% East Asian, mean age of onset: 53.9 years). We determine that this variant is enriched in East Asian PD patients compared to population controls (OR = 8.0, 95% CI: 3.0–20.9), and provide supportive data for its co-segregation with PD, albeit with incomplete penetrance. Utilizing established experimental workflows, this variant showed increased LRRK2 kinase activity, by ~2-fold compared to wildtype and higher than the p.Gly2019Ser variant. Taken together, p.Arg1067Gln should be reclassified from a VUS to pathogenic for causing LRRK2 -PD.
February 2025
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52 Reads
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1 Citation
npj Parkinson s Disease
Pathogenic variants in the LRRK2 gene are one of the most commonly identifiable monogenic causes of Parkinson´s disease (PD, PARK-LRRK2). This systematic MDSGene literature review comprehensively summarizes published demographic, clinical, and genetic findings related to LRRK2 variants ( https://www.mdsgene.org/ ). Data on 4660 individuals with 283 different variants were curated. The median age at onset in the PD patients with available information was 56 years, notably, with approximately one-third having PD onset <50 years. Tremor was the most frequently reported initial symptom and more common than reported in other dominantly inherited forms of PD. Of the 211 potentially PD-causing variants, 25 were classified as pathogenic or likely pathogenic, and the remaining 186 (88.2%) were variants of uncertain significance. p.G2019S was the most frequently reported pathogenic variant, followed by p.R1441G and p.R1441C. This systematic review represents the most extensive database on PARK-LRRK2 to date and provides a vital resource to improve precision medicine.
February 2025
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91 Reads
Movement Disorders
Depending on zygosity and the specific change, different variants in the GBA1 gene can cause Parkinson's disease (PD, PARK-GBA1) with reduced penetrance, act as genetic risk factors for PD or parkinsonism, and/or lead to Gaucher's disease (GD). This MDSGene systematic literature review covers 27,963 patients carrying GBA1 variants from 1082 publications with 794 variants, including 13,342 patients with PD or other forms of parkinsonism. It provides a comprehensive overview of demographic, clinical, and genetic findings from an ethnically diverse sample originating from 82 countries across five continents. The most frequent pathogenic or likely pathogenic variants were "N409S" (aka "N370S"; dominating among Jewish and Whites), and "L483P" (aka "L444P"; dominating among Asians and Hispanics), whereas the most common coding risk variants were "E365K" (E326K), and "T408M" (T369M) (both common among Whites). A novel finding is that early-onset PD patients were predominantly of Asian ethnicity, whereas late-onset PD patients were mainly of White ethnicity. Motor cardinal features were similar between PD patients and other forms of parkinsonism, whereas motor complications and non-motor symptoms were more frequently reported in PD patients carrying "severe" variants than in those with "risk" or "mild" variants. Cognitive decline was reported in most patients after surgical treatment, despite achieving a beneficial motor function response. Most GD patients developing PD harbored the "N409S" variant, were of Ashkenazi Jewish ethnicity, and showed a positive response to chronic levodopa treatment. With this review, we start to fill the gaps regarding genotype-phenotype correlations in GBA1 variant carriers, especially concerning PD. © 2025 The Author(s). Movement Disorders published by Wiley Periodicals LLC on behalf of International Parkinson and Movement Disorder Society.
February 2025
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26 Reads
Parkinsonism & Related Disorders
January 2025
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418 Reads
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4 Citations
Nature Medicine
Genetic diagnosis of rare diseases requires accurate identification and interpretation of genomic variants. Clinical and molecular scientists from 37 expert centers across Europe created the Solve-Rare Diseases Consortium (Solve-RD) resource, encompassing clinical, pedigree and genomic rare-disease data (94.5% exomes, 5.5% genomes), and performed systematic reanalysis for 6,447 individuals (3,592 male, 2,855 female) with previously undiagnosed rare diseases from 6,004 families. We established a collaborative, two-level expert review infrastructure that allowed a genetic diagnosis in 506 (8.4%) families. Of 552 disease-causing variants identified, 464 (84.1%) were single-nucleotide variants or short insertions/deletions. These variants were either located in recently published novel disease genes (n = 67), recently reclassified in ClinVar (n = 187) or reclassified by consensus expert decision within Solve-RD (n = 210). Bespoke bioinformatics analyses identified the remaining 15.9% of causative variants (n = 88). Ad hoc expert review, parallel to the systematic reanalysis, diagnosed 249 (4.1%) additional families for an overall diagnostic yield of 12.6%. The infrastructure and collaborative networks set up by Solve-RD can serve as a blueprint for future further scalable international efforts. The resource is open to the global rare-disease community, allowing phenotype, variant and gene queries, as well as genome-wide discoveries.
... A large number of LRRK2 variants, numbering almost 200, are presently classified as variants of uncertain significance (VUS) (see https://www.mdsgene.org) 12 . Although in some cases co-occurrence with PD has been reported, data have been lacking from extended pedigrees (to assess co-segregation of the variant with disease), large case-control samples, and/or functional assays in model systems, to enable a more definitive determination of the pathogenicity of these VUS. ...
February 2025
npj Parkinson s Disease
... Since these calls support relatively large genetic events (>100 kb), we clinically assessed them in the complete human genome. In contrast, clinical interpretation of SV calls corresponding to characterized deletions, inversions, duplications, and insertions (size <100 kb) was restricted to events that reside in genes within recently curated ERN-specific gene lists (Laurie et al. 2025). ...
January 2025
Nature Medicine
... While this approach may allow to identify more VUS and result in unclear diagnosis, it may allow to identify causative variants in genes beyond restricted gene panel testing. Furthermore, this approach may allow for re-analysis of data to yield future diagnosis when novel genes are identified or tools for variant detection in short read-sequencing data become available [32][33][34]. Second, the cases analyzed in this study were referred for genetic counseling and thus the cohort may be enriched for patients with a suspected family history and/or specific cancer type. For example, a relatively high number of cases in the studied cohort(s) developed breast cancer. ...
October 2024
npj Genomic Medicine
... To date, more than 20 PD-causative genes have been identified. Moreover, more genetic risk genes and variants of sporadic PD phenotypes have been identified in various association studies [6,7]. The genetic variations related to PD provide much evidence for understanding the pathogenesis of PD. ...
October 2024
The Lancet Neurology
... Haplotype analysis in the seven Malaysian and Singaporean carriers, 307 Malaysian East Asian (EAS) controls, and 1220 Malaysian EAS PD patients negative for p.Arg1067Q, was performed with forty-one single nucleotide polymorphisms (SNPs) selected from Neurobooster Array (NBA) 26 , CENTOGENE, and whole exome datasets over a 140kbp interval across the p.Arg1067Gln variant. The p.Arg1067Gln variant did not appear to be located on any shared disease haplotype among the seven carriers, or on any rare sub-haplotype based on 18 of the 41 SNPs with an MAF of 0.01 (Supplementary Table 3), and the haplotypes of the seven carriers were similar to the haplotypes seen in the controls or p.Arg1067Gln-negative patients (Supplementary Table 4). ...
September 2024
Movement Disorders
... GBA1-PD falls within this category. While this is the most common genetic cause of PD, based on the latest information coming from the ROPAD study showing a 10.4% positive GBA1 variant among 12,580 patients with PD [30], given the estimated number of patients in the USA suffering from PD being more than 1 million [31], this 10.4% falls within the definition of rare disease, which is less than 200,000 (https: //www.fda.gov/patients/rare-diseases-fda accessed on 14 February 2025). ...
August 2024
Brain
... Pathogenic variants in the LRRK2 gene are among the most common causes of autosomal dominant Parkinson's disease (PD) 1,2 and are thought to act through a gain-of-function mechanism that increases kinase activity 3 . The LRRK2 p.L1795F variant (chr12:40322386:G:T, hg38, rs111910483) has been shown to significantly enhance kinase activity, supporting its pathogenic role 4 . ...
July 2024
Brain
... Further systematic studies in patients with rare diseases are needed to determine what reanalysis strategy is optimal and cost-effective, ideally implemented in healthcare systems, as exemplified in a recent collaborative study between German university hospitals [80]. Future advances in bioinformatics infrastructure could facilitate frequent automated reannotation of available genomic data using software-or artificial intelligence-based variant classification or interpretation [81,82] and integration with systematic phenotyping data with application programming interface (API) [83], thereby prioritizing variants for expert review. ...
July 2024
Nature Genetics
... The utilization of genomic sequencing has seen a significant rise in the diagnosis of a wide array of diseases, including rare ones (40,44). In recent years, there has been a paradigm shift in diagnosing rare diseases of epigenetic origin (RDEOs) owing to the transformative impact of next-generation sequencing techniques. ...
June 2024
European Journal of Human Genetics
... Over the past decade, the integration of WES into routine clinical diagnostics has increased due to its ability to enhance diagnostic yield. It has considerably improved the identification of genetic variants linked to diseases, making it invaluable for research and clinical applications [1][2][3][4]. However, despite becoming a firsttier genetic test [5,6], the laboratory procedure remains highly complicated and sensitive without unified standards or guidelines. ...
May 2024
European Journal of Human Genetics