Katie M. Kobayashi’s research while affiliated with University of California, Santa Cruz and other places

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Publications (1)


The Scott Creek (Santa Cruz County, California, USA) watershed served as the experimental landscape for our study. Study sites (large circles) were distributed among five sampling regions separated by two waterfall barriers (teal squares) and a major stream confluence. Life‐cycle monitoring sites (small circles) served as additional encounter opportunities for tracking migratory behavior.
STRUCTURE analysis of Oncorhynchus mykiss assemblages across the watershed effectively divided fish into three distinct clusters, with an apparent gene flow gradient on Big Creek. Individual ancestry assignments (Q; Panel a) and total proportion ancestry to above‐barrier populations (∑Q; Panel b) depict above‐mainstem ancestry in blue, above‐Big Creek ancestry in orange, and below‐barrier ancestry in pink.
Omy05 genotype frequencies varied across study sites as expected by selection by waterfalls and one‐way gene flow. Homozygous rearranged (RR) genotypes (red) were common above waterfalls, whereas homozygous ancestral (AA) genotypes (blue) predominated below. Below the falls, RR and AR genotypes were more prevalent at sites where we found strong signals of one‐way gene flow.
Generalized additive models (GAMs) estimated maximum emigration probability among Omy05 genotypes and sexes in support of anadromous dominance. Female ancestral homozygous genotypes (AA, blue, left) showed a markedly elevated probability of emigrating, whereas male ancestral homozygous genotypes (AA, blue, right) showed similar emigration estimates to heterozygotes of both sexes (AR, yellow). Rearranged homozygous genotypes (RR, red) showing a reduced probability of emigrating for both sexes.
Generalized additive models (GAMs) estimated maximum emigration probability among sampling sites in accordance with observed selection and gene flow histories. For above‐falls populations, emigration probability was higher on Big Creek, supporting higher rates of dispersal and gene flow and fewer ancestral alleles at sites below.

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Genetic divergence and one‐way gene flow influence contemporary evolution and ecology of a partially migratory fish
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June 2024

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4 Citations

Katie M. Kobayashi

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Rosealea M. Bond

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Recent work has revealed the importance of contemporary evolution in shaping ecological outcomes. In particular, rapid evolutionary divergence between populations has been shown to impact the ecology of populations, communities, and ecosystems. While studies have focused largely on the role of adaptive divergence in generating ecologically important variation among populations, much less is known about the role of gene flow in shaping ecological outcomes. After divergence, populations may continue to interact through gene flow, which may influence evolutionary and ecological processes. Here, we investigate the role of gene flow in shaping the contemporary evolution and ecology of recently diverged populations of anadromous steelhead and resident rainbow trout (Oncorhynchus mykiss). Results show that resident rainbow trout introduced above waterfalls have diverged evolutionarily from downstream anadromous steelhead, which were the source of introductions. However, the movement of fish from above to below the waterfalls has facilitated gene flow, which has reshaped genetic and phenotypic variation in the anadromous source population. In particular, gene flow has led to an increased frequency of residency, which in turn has altered population density, size structure, and sex ratio. This result establishes gene flow as a contemporary evolutionary process that can have important ecological outcomes. From a management perspective, anadromous steelhead are generally regarded as a higher conservation priority than resident rainbow trout, even when found within the same watershed. Our results show that anadromous and resident O. mykiss populations may be connected via gene flow, with important ecological consequences. Such eco‐evolutionary processes should be considered when managing recently diverged populations connected by gene flow.

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... Genetically, long-term isolation may have led to reproductive isolation between populations rom the dierent rivers, resulting in genetic divergence that reduces the likelihood o inter-population introgression, while increasing the chances o inbreeding within a population. Additionally, behavioural actors, such as dierences in mating preerences or reproductive timing [48], could urther limit gene fow between the populations. Consequently, uture research should ocus on exploring how these actors contribute to the genetic structure o populations and their implications or eective conservation and management strategies. ...

Reference:

Spatial structure o tilapia phylogenetic diversity across ve rivers in the Niger Delta states o Nigeria
Genetic divergence and one‐way gene flow influence contemporary evolution and ecology of a partially migratory fish