Jun-ichi Anzai’s research while affiliated with Tohoku University and other places

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Publications (317)


and their relationships are shown in Supplementary Fig. 10. c The fluorescent scanning images show that the encoded cells are captured in specific capture zones on a glass slide that is prefunctionalized with the capture strands (CS, complementary to ES). The right part shows the enlarged capture zones with captured cells, and 990 ± 86 cells have been captured at each capture zone. Data are presented as the mean ± s.d. of three independent experiments. Scale bar, 100 mm
comparison of the different approaches for encapsulating cells in polymers
In situ DNA-oriented polymerization reaction (isDOP) for cell encapsulation. a, b The isDOP contains two DNA replication reactions, R1 and R2. R1 is primed by the initiating primers (IPs), leading to the assembly of long initial polymers (LonDNA, gray). R2 is primed by the branched primers (BPs), leading to the branched replication that synthesizes the LatDNA polymers (yellow). Sequence-specific assemblies across these LonDNA and LatDNA polymers fabricate the DNA cocoon at cell surface. c The scanning confocal microscope images show that typical cell types are encapsulated in the DNA polymer cocoons, including bacterial (E. coli), eukaryotic (yeast), and mammalian cells (MCF-7). The insert shows the reconstructed 3D-image of encapsulated MCF-7 cells. The surface-grafted DNA cocoons are labeled with FAM-modified oligonucleotides (green). The cell nuclei are stained with Hoechst 33342 (blue). Scale bar, 20 μm
Characterizations of the R1 and R2 reactions. a Feasibility tests of the polymerization reactions using agarose gel analysis. The R1 and R2 reactions are performed individually or coupled. Lanes 1–3 respectively show the DNA products of R1, R2, and R1R2 after staining with GelRed. Lanes 4–7 show the S1 nuclease degradation test to reveal the feasibility of DNA assembly during the reaction. The increased concentrations of BP (5, 25, and 100 nM) in R1R2 show enhanced resistance of the DNA polymer networks against S1 nuclease degradation. DNA marker, 1 kbp ladder from 0.5 to 10 kbp. Source data are provided as a Source Data file. b−d Typical AFM images show the fabrication process: b LonDNA strands generated by R1, c LatDNA strands crosslinking LonDNA to form a fan-shaped DNA network at the beginning of R2, d DNA network fabricated by the coupled reactions of R1R2. The blue arrows indicate the positions of DNA polymerases. The z-color scales in (b−d) are 3.98, 3.12 and 5.87 nm, respectively. e Scanning confocal microscope images show the locations of LonDNA and LatDNA strands at cell surface. The two strands are respectively labeled with dye-modified IP (green) and BP (red) probes. Scale bars, 10 μm
Fabrication of DNA cocoons on cells. a−c Confocal fluorescence microscopy images show the grafted DNA polymers on MCF-7 cells. The influence of the R1 and R2 reactions are investigated at low concentration of 10 nM IP, where image (a) shows the solely conducted R1, and image (b) shows the coupled R1R2 reactions. Image (c) shows the R1R2 reactions when the IP concentration is 150 nM. The cell-surface-grafted DNA polymers are imaged after labeling with FAM-modified oligonucleotides (green). Attached MCF-7 cells are used for the fluorescent observation in the culture dish. Scale bars, 20 μm. d−i Differential interference contrast (DIC) and confocal fluorescence microscopy images of the individual encapsulated MCF-7 cells, revealing the influence of R2 on the formation of the DNA cocoon. The concentrations of the BP in R2 are 10, 20, 40, 80, 160, and 320 nM. The bottom row shows the analysis of the fluorescent intensities, indicating the gain of DNA polymers densities in the DNA cocoon. Scale bars, 10 μm. j, k Flow cytometric evaluation of the polymer density of the DNA cocoons on the MCF-7 cells. The above BP with concentrations of 10–320 nM are used for the cell encapsulation with isDOP. Source data are provided as a Source Data file. The error bars indicate the standard deviation of 10,000 cell events at each concentration

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Design and fabrication of flexible DNA polymer cocoons to encapsulate live cells
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July 2019

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332 Reads

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62 Citations

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Tianshu Chen

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Chang Feng

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Genxi Li

The capability to encapsulate designated live cells into a biologically and mechanically tunable polymer layer is in high demand. Here, an approach to weave functional DNA polymer cocoons has been proposed as an encapsulation method. By developing in situ DNA-oriented polymerization (isDOP), we demonstrate a localized, programmable, and biocompatible encapsulation approach to graft DNA polymers onto live cells. Further guided by two mutually aided enzymatic reactions, the grafted DNA polymers are assembled into DNA polymer cocoons at the cell surface. Therefore, the coating of bacteria, yeast, and mammalian cells has been achieved. The capabilities of this approach may offer significant opportunities to engineer cell surfaces and enable the precise manipulation of the encapsulated cells, such as encoding, handling, and sorting, for many biomedical applications.

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Host-Guest Chemistry in Layer-by-Layer Assemblies Containing Calix[n]arenes and Cucurbit[n]urils: A Review

January 2018

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174 Reads

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14 Citations

Polymers

This review provides an overview of the synthesis of layer-by-layer (LbL) assemblies containing calix[n]arene (CA[n]) and cucurbit[n]uril (CB[n]) and their applications. LbL assemblies, such as thin films and microcapsules, containing selective binding sites have attracted considerable attention because of their potential use in separation and purification, sensors for ions and molecules, and controlled release. CA[n]-containing LbL films have been prepared using sulfonated CA[n] and cationic polymers to construct chemical sensors and molecular containers. CA[n]-containing LbL films deposited on the surface of a porous support are useful as ion-selective membranes that exhibit selective permeability to monovalent ions over multivalent ions. CB[n]s have been used as molecular glues for the construction of LbL films and microcapsules by taking advantage of the strong affinity of CB[n]s to aromatic compounds. CB[n]s form a stable 1:1:1 ternary complex with electron-rich and electron-deficient molecules in LbL films to stabilize the assemblies. CB[n]-containing LbL films can also be deposited on the surfaces of micro templates and nanopore membranes to construct microcapsules for controlled release and nanochannels for selective ion transport, respectively.


Figure 7. (A) DPVs of the ARS-confined (PBA-PEI/CMC)10PBA-PEI film-coated electrodes in the presence of sorbitol and the binding equilibrium between ARS-PBA and sorbitol (inset); and (B) changes in the intensity of peak current in DPVs at ca. −0.67 V as a function of the concentration of L-dopa (a); sorbitol (b); and glucose (c). ∆Ip denotes the peak current around −0.67 V increased in the presence of L-dopa, sorbitol, and glucose. DPVs were recorded at pH 9.0. 
Voltammetric Response of Alizarin Red S-Confined Film-Coated Electrodes to Diol and Polyol Compounds: Use of Phenylboronic Acid-Modified Poly(ethyleneimine) as Film Component

January 2018

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102 Reads

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5 Citations

Sensors

Alizarin red S (ARS) was confined in layer-by-layer (LbL) films composed of phenylboronic acid-modified poly(ethyleneimine) (PBA-PEI) and carboxymethylcellulose (CMC) to study the voltammetric response to diol and polyol compounds. The LbL film-coated gold (Au) electrode and quartz slide were immersed in an ARS solution to uptake ARS into the film. UV-visible absorption spectra of ARS-confined LbL film suggested that ARS formed boronate ester (ARS-PBS) in the film. The cyclic voltammetry of the ARS-confined LbL film-coated electrodes exhibited oxidation peaks at −0.50 and −0.62 V, which were ascribed to the oxidation reactions of ARS-PBS and free ARS, respectively, in the LbL film. The peak current at −0.62 V increased upon the addition of diol or polyol compounds such as L-dopa, glucose, and sorbitol into the solution, depending on the concentration, whereas the peak current at −0.50 V decreased. The results suggest a possible use of ARS-confined PBA-PEI/CMC LbL film-coated Au electrodes for the construction of voltammetric sensors for diol and polyol compounds.



Photosensitive Layer-by-Layer Assemblies Containing Azobenzene Groups: Synthesis and Biomedical Applications

October 2017

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159 Reads

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24 Citations

Polymers

This review provides an overview of the syntheses of photosensitive layer-by-layer (LbL) films and microcapsules modified with azobenzene derivatives and their biomedical applications. Photosensitive LbL films and microcapsules can be prepared by alternate deposition of azobenzene-bearing polymers and counter polymers on the surface of flat substrates and microparticles, respectively. Azobenzene residues in the films and microcapsules exhibit trans-to-cis photoisomerization under UV light, which causes changes in the physical or chemical properties of the LbL assemblies. Therefore, azobenzene-functionalized LbL films and microcapsules have been used for the construction of photosensitive biomedical devices. For instance, cell adhesion on the surface of a solid can be controlled by UV light irradiation by coating the surface with azobenzene-containing LbL films. In another example, the ion permeability of porous materials coated with LbL films can be regulated by UV light irradiation. Furthermore, azobenzene-containing LbL films and microcapsules have been used as carriers for drug delivery systems sensitive to light. UV light irradiation triggers permeability changes in the LbL films and/or decomposition of the microcapsules, which results in the release of encapsulated drugs and proteins.


Ultra-Sensitive Quantitation of Plasma Membrane Proteins via is RTA

September 2017

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37 Reads

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31 Citations

Analytical Chemistry

Quantitation of plasma membrane proteins (PMPs) are fundamental and frequently performed in the daily lab-work. However, challenged by inherent/interacted hetero-structures and complex surroundings of the PMPs in lipid membrane, quantitative techniques for PMP often require complex treatments (e.g. labelling, isolation, purification, and determination), and the sensitivity is usually not satisfactory. To address the problem, we have proposed a novel method that enables quantitation of PMPs with extremely high sensitivity, in an easier-to-manipulate and more streamlined way. This method is based on the design of in situ rolling cycling replication-templated amplification strategy, named as isRTA. In fact, two rounds of DNA cascade isothermal amplifications have been conducted. The 1st round of amplification reaction can provide templates for the 2nd round of amplification, thus significant enhancement of quantitative signals can be achieved. In this way, PMPs are quantified with ultra-high sensitivity, as few as 25 copies of PMPs can be detected per cell. Moreover, the advantages of isRTA have been demonstrated by simultaneous identification of several PMP biomarkers (MUC1, EpCAM and HER2) that are expressed with wide distribution range on breast cancer cells. The precise typing of breast cancer cell subsets is thus possible based on “quantitative-to-qualitative” strategy. Therefore, the unprecedented sensitivity and high usability of isRTA method may give significant prospects for delving into membrane proteins and their related bio-functions in many research fields.


Preparation of a PVA/PBA dispersion and its response to glucose, fructose, and hydrogen peroxide

September 2017

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377 Reads

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1 Citation

Colloid and Polymer Science

A phenylboronic acid (PBA)/polyvinyl alcohol (PVA) dispersion was prepared by mixing PBA and PVA solutions. The PVA/PBA conjugate precipitated due to binding of several PBAs to PVA and reduction of solubility. The formation of the PVA/PBA dispersion was affected by the ratio of PBA to PVA, the ionic strength, and the pH. The aim of this study was to investigate the sugar and H2O2 response of the dispersion. The optical density (OD) of the PVA/PBA dispersion decreased by addition of fructose, which replaced PVA in the boronate ester by competitive interaction. The PVA/PBA dispersion was also dissolved by addition of H2O2, because the boronate ester bond was cleaved by the oxidative reaction of H2O2. The PVA/PBA dispersion completely dissolved in 10 mM fructose and 3.0 mM H2O2. In addition, the PVA/PBA dispersion responded to 10 mM glucose under glucose oxidase containing conditions. Functional PBA material was prepared by simple operation.


Lactate-induced decomposition of layer-by-layer films composed of phenylboronic acid-modified poly(allylamine) and poly(vinyl alcohol) under extracellular tumor conditions

September 2017

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15 Reads

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16 Citations

Journal of Colloid and Interface Science

Multilayer films that decompose in the presence of lactate were prepared by depositing phenylboronic acid-modified poly(allylamine) (PBA-PAH) and poly(vinyl alcohol) (PVA) on a lactate oxidase (LOx) layer. The layers adhered through boronate ester bonds. The resulting LOx(PBA-AH/PVA)10 film was stable in pH 7.4 solution but decomposed following the addition of lactate. The carbon-boron bonds in PBA residues were cleaved by oxidative reaction with H2O2 produced by the enzymatic reaction of LOx. Approximately 90% of the film decomposed following exposure for 120 and 30min to 0.05 and 20mM lactate at pH 7.4, respectively. The multilayer film therefore decomposed under conditions comparable to the extracellular environment of tumors (20mM lactate at pH 6.5). Our results show that LOx/(PBA-PAH/PVA)10 multilayer film could be used for cancer drug delivery systems.


Cyclodextrin-containing layer-by-layer films and microcapsules: Synthesis and applications

July 2017

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39 Reads

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7 Citations

This article reviews the synthesis and applications of cyclodextrin (CD)-containing layer-by-layer (LbL) films and microcapsules. CD-containing LbL films and microcapsules have been synthesized through the electrostatic interactions between charged CDs and polyelectrolytes or the formation of host–guest complexes. In the former strategy, sulfonated and carboxylated CDs are often combined with oppositely charged polyelectrolytes. In contrast, in the latter strategy, CD-bearing polymers and guest-modified polymers are used as components of LbL assembly. Typical guest molecules include adamantane, ferrocene, and azobenzene derivatives. Electrochemical biosensors have been constructed by coating the surface of electrodes with CD-containing LbL films. In addition, CD-containing LbL assemblies are used as scaffolds for constructing drug delivery systems, in which hydrophobic, poorly soluble drugs are loaded on the film through host–guest complexation.


Recent Progress in Nanomaterial-Based Electrochemical Biosensors for Cancer Biomarkers: A Review

June 2017

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252 Reads

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106 Citations

Molecules

This article reviews recent progress in the development of nanomaterial-based electrochemical biosensors for cancer biomarkers. Because of their high electrical conductivity, high affinity to biomolecules, and high surface area-to-weight ratios, nanomaterials, including metal nanoparticles, carbon nanotubes, and graphene, have been used for fabricating electrochemical biosensors. Electrodes are often coated with nanomaterials to increase the effective surface area of the electrodes and immobilize a large number of biomolecules such as enzymes and antibodies. Alternatively, nanomaterials are used as signaling labels for increasing the output signals of cancer biomarker sensors, in which nanomaterials are conjugated with secondary antibodies and redox compounds. According to this strategy, a variety of biosensors have been developed for detecting cancer biomarkers. Recent studies show that using nanomaterials is highly advantageous in preparing high-performance biosensors for detecting lower levels of cancer biomarkers. This review focuses mainly on the protocols for using nanomaterials to construct cancer biomarker sensors and the performance characteristics of the sensors. Recent trends in the development of cancer biomarker sensors are discussed according to the nanomaterials used.


Citations (90)


... [31] Imaging applications have also been developed. [32,33] But only a few studies have reported the inclusion of DNA oligonucleotides on bacterial cell surfaces: lipid-DNA conjugates for selective detection of bacteria by microscopy, [34] aldehyde-hydrazine condensation for S. oneidensis attachment to coated electrode surfaces to produce electricity, [35,36] DNA polymers to encapsulate bacteria, [37] DNA origami nanostructures as a vehicle to deliver antimicrobial agent, [38] aptamer or DNA-small molecule conjugates for cancer therapy application. [39,40] A significant drawback of DNA engineered systems is their susceptibility to nuclease-mediated degradation. ...

Reference:

Controlled E. coli Aggregation Mediated by DNA and XNA Hybridization
Design and fabrication of flexible DNA polymer cocoons to encapsulate live cells

... Layer-by-layer deposition is a technique used to form a nanometer-thick multilayer film on a solid substrate surface, such as metals and glass, via electrostatic interactions by alternately immersing the substrate in a polycation and polyanion solutions (Scheme 1) [1]. Formation of a thin multilayer film can be both driven by electrostatic interaction and by other types of interactions, such as biological affinity, e.g., avidin-biotin bonds [2][3][4], sugar-lectin bonds [5]; hydrogen bonds [6,7]; diol-phenylboronic acid bonds [8,9]; guest-host interactions [10]; and other low energy physical bonds [11][12][13]. Thus, a functional thin film can be formed from synthetic polymers and other materials, such as proteins, such as enzymes [14,15], polysaccharides [16,17], supramolecular compounds [18], and nanoparticles [19]. ...

Host-Guest Chemistry in Layer-by-Layer Assemblies Containing Calix[n]arenes and Cucurbit[n]urils: A Review

Polymers

... Subsequently, they treated the electrode with Alizarin red S, providing redox activity for sensing polyol compounds with tunable electrochemical properties in the presence of phenylboronic acid (PBA) [38]. The research group later improved the system by directly grafting PBA onto the PEI for enhanced sensing performance [39]. In another noteworthy example of the importance of nanocellulose-PEI composites in sensing, Zhang and colleagues reported synthesizing gold nanoparticle-bacteria cellulose nanofiber (BNC) composites. ...

Voltammetric Response of Alizarin Red S-Confined Film-Coated Electrodes to Diol and Polyol Compounds: Use of Phenylboronic Acid-Modified Poly(ethyleneimine) as Film Component

Sensors

... Organized assemblies of this type of organic dyes prepared by LbL self-assembly method have been reported for various sensing and optical applications [14]. Other important applications of azobenzene containing LbL assemblies are the photo-controlled cell adhesion and photo-controlled ion gating in the biomedical field [15]. In many of these applications a proper understanding of the nature of aggregation and phase behavior of azo dyes organized in LbL film is utmost important to assess their optimal performance. ...

Photosensitive Layer-by-Layer Assemblies Containing Azobenzene Groups: Synthesis and Biomedical Applications

Polymers

... [20][21][22][23][24] They have been also used for the development of glucose and lactate degrading thin films, in combination with oxidases. [25][26][27] Herein, we report the electrolysis of p-acetamidophenylboronic acid as a new functionality of PBA (Fig. 1). The carbonboron bond in p-acetamidophenylboronic acid cleaved by the applied electric potential to form a corresponding phenolic derivative (p-acetoamidephenol). ...

Lactate-induced decomposition of layer-by-layer films composed of phenylboronic acid-modified poly(allylamine) and poly(vinyl alcohol) under extracellular tumor conditions
  • Citing Article
  • September 2017

Journal of Colloid and Interface Science

... Based on the above principles, as shown in Figure 4B, Gao et al. [75] proposed a quantitative analysis method for plasm membrane proteins (PMPs) through an in situ rolling cycle replication template amplification strategy (isRTA) involving two rounds of amplification and a cascading isotherm reaction, which were triggered by RCA and nicking enzymes, and then a precise quantitative measurement of PMP was performed. In this work, isRTA was used to quantify tumor-associated PMP biomarkers (such as MUC1, EpCAM, and HER2) that may reflect different breast cancer phenotypes. ...

Ultra-Sensitive Quantitation of Plasma Membrane Proteins via is RTA
  • Citing Article
  • September 2017

Analytical Chemistry

... Other molecular interactions such as charge-transfer (CT) interactions [21], DNA hybridization [22], host-guest complexations [23], π-cation interactions [24], coordination bonds [25], and covalent bonds [26] are also available as binding forces for the construction of LbL films. These molecular interactions are characterized by the high selectivity in binding. ...

Cyclodextrin-containing layer-by-layer films and microcapsules: Synthesis and applications

... PBA and boronate ester bonds are oxidized to phenols by H 2 O 2 in aqueous solution [38]. This reaction has been used for the development of H 2 O 2 sensitive thin films [39,40], particles [41,42], and sensors [43][44][45]. Therefore, the H 2 O 2 response of the (PAH/PBA 10% -PAA) 10 was investigated (Fig. 11). ...

Preparation of a PVA/PBA dispersion and its response to glucose, fructose, and hydrogen peroxide

Colloid and Polymer Science

... These sensors are being developed for applications such as continuous glucose monitoring in diabetic patients and the detection of genetic mutations associated with cancer (B. Wang et al., 2017). Additionally, nanowires, typically made from silicon or other semiconductors, are employed in highly sensitive biosensors that detect biomolecules at very low concentrations. ...

Recent Progress in Nanomaterial-Based Electrochemical Biosensors for Cancer Biomarkers: A Review

Molecules

... [36][37][38] Various polymers have been used as coating materials, for instance, chitosan, polyethylene glycol, polylactic-co-glycolide, dextran, polyvinyl alcohol, gelatin, polyacrylic acid and polysialic acid in unmodified and functionalized forms. [39][40][41][42][43][44][45][46] Functionalization of polymers to sharpen them for drug-targeting applications is carried out by chemically linking various functional groups, including folate, [47] peptides, [48,49] boronic acid, [50] fluorescent dyes [51,52] and drugs. [53] These ligands are tethered to enhance cell internalization, tissue selectivity and imaging. ...

Phenylboronic Acid-Functionalized Layer-by-Layer Assemblies for Biomedical Applications

Polymers