Jun Yamamoto’s research while affiliated with Hokkaido University and other places

What is this page?


This page lists works of an author who doesn't have a ResearchGate profile or hasn't added the works to their profile yet. It is automatically generated from public (personal) data to further our legitimate goal of comprehensive and accurate scientific recordkeeping. If you are this author and want this page removed, please let us know.

Publications (51)


Broadband characteristics of Pacific herring (Clupea pallasii) and Pacific chub mackerel (Scomber japonicus) target strength identified using the tether method
  • Article

March 2025

·

19 Reads

·

1 Citation

Fisheries Research

Zi Wang

·

·

·

[...]

·

Jun Yamamoto

Deployments of measurement systems in the freshwater tank located at HU (left) and saltwater tank at HRCFO (right).
Analysis of calibration of 38.1 mm-diameter standard sphere with time-series single pulse. (a) Single echo received from the sphere; (b) output of the matched filter applied to the signal in (a); (c) predicted frequency response of TS for the sphere; (d) results of calculating the system response Kcp(f), noting that the graph shows all results for Kcp measured on 23 August, 27 August, and 2 September, although the lines are almost overlapped.
Radiographs of mackerel (No. 3 in Table 1) radiated to the lateral-aspect (a) and dorsal-aspect (b). The white dotted lines show the shape of the swim bladder.
Frequency responses of the TS for a 22.2 mm diameter sphere. The dot marks show the TS measured by using a calibrated custom-made echosounder, and the solid lines show the predicted TS. The shaded frequency bands are excluded from the analyses due to a low signal-to-noise ratio.
Gain of the EK80 system resulting from the calibration in the saltwater tank in August (black lines) and October (gray line). The shaded frequency bands are excluded from the analyses due to a large deviation in the gain.

+10

Broadband Characteristics of Target Strength of Pacific Chub Mackerel
  • Article
  • Full-text available

January 2025

·

62 Reads

Broadband backscattering measurements of Pacific mackerel (Scomber japonicus) can improve acoustic surveys of the species for the management of its fisheries throughout the Pacific Ocean. The determination of its target strength (TS), the logarithmic form of the backscattering cross-section, is the aim of this work. It was measured for fourteen individual specimens, eight in a freshwater tank and six in a seawater tank, using calibrated broadband echosounders spanning the frequency band 24–84 kHz. The TS is expressed as a function of frequency and tilt angle, with fish length as a parameter. The individual broadband TS patterns with the tilt angle of fish showed size and frequency dependencies. The fish length-normalized TS of mackerel decreased with increasing fish length-to-acoustic wavelength ratio (l/λ) in the small l/λ range (approximately 2–6) but was flat in the larger l/λ range (>6). This variation in the normalized TS indicates that a pair of regression equations is necessary to span the range of commercially important mackerel relative to the acoustic wavelength. The relative l/λ characteristic of the normalized TS showed constant values with tilt-angle distributions over a large l/λ range and can be used as a characteristic of acoustic backscattering for discrimination among species.

Download

Broadband target strength of arabesque greenling, Pacific sand lance, and pointhead flounder

December 2023

·

145 Reads

·

7 Citations

ICES Journal of Marine Science

Measurement of target strength (TS) is important for estimating the abundance of species using fisheries acoustics. However, most researchers have only used a limited number of representative frequencies for acoustic measurements of fish without a swim bladder (bladderless fish). Here, we measured the broadband TS of three bladderless fish species, arabesque greenling (Pleurogrammus azonus), Pacific sand lance (Ammodytes personatus), and pointhead flounder (Cleisthenes pinetorum), using two broadband echosounders. TS measurements were conducted in a seawater tank over frequency ranges of 45–90 and 80–120 kHz using a tether method. Higher TS and directivity were observed at higher frequencies than at lower frequencies for pointhead flounder and arabesque greenling. However, the TS for Pacific sand lance was relatively flat over the measured frequency spectra. Additionally, the TS of pointhead flounder and Pacific sand lance could be expressed as a function of body length and the TS of arabesque greenling could be expressed as a function of body length and frequency, which could be used in fish species discriminations and size estimations.


Laboratory observations on jig capturing behavior of the Japanese flying squid, Todarodes pacificus (水槽実験によるスルメイカの擬餌針捕捉行動の観察)

June 2023

·

30 Reads

During squid jigging operations, the hauling velocity of the jigs changes periodically with the up-and-down motion. We observed 62 Japanese flying squid, Todarodes pacificus, in a large experimental tank to clarify the relationship between the up-and-down motion of a jig and jig capturing behavior of the squid. When a jig was put into the tank, the squid recognized the jig, turned toward it, and approached it to capture it. The squid reacted to the jig when it was falling, but none reacted to the ascending jig. When the squid is in a hovering posture, its visual axes are considered to be directed forward. Consequently, the squid attacked the falling jig as it is easier to see the jig while it is falling down from above and coming into view. Over 10 minutes, we observed 52 approaches, of which only 3 were successful. We believe that in many cases the squid gave up their approach because the jig moved away too quickly in the time between jig recognition and capture. In cases of successful capture, the squid captured the jig when its velocity had slowed. We conclude that the squid is more likely to be successful by performing capturing behavior when the velocity of the jig is decreasing.


Genetic evidence for multiple mating and mixing of sperm from multiple males in the seminal receptacles of female Japanese flying squid ( Todarodes pacificus )

September 2022

·

56 Reads

·

1 Citation

Journal of Molluscan Studies

The genetic diversity of sperm and spermatangia stored by mated Japanese flying squid (Todarodes pacificus) was examined to better understand how this ommastrephid squid mates and stores sperm. Analyses were conducted using spermatangia implanted in the lips of immature squid collected in Tsugaru Strait, northern Japan, in July–August 2019, spermatangia implanted in the lips of mature squid collected in the East China Sea in April 2019, and sperm stored in the seminal receptacles of squid collected off Tosashimizu, Kochi Prefecture, Japan, in February 2019. DNA was extracted, microsatellite loci were amplified using five PCR primers, and allele peaks were analysed. Analysis of the spermatangia confirmed that females in the field mate with multiple males, suggesting that males transfer from 1 to at least 14 spermatangia in each mating. Analysis of the seminal receptacles showed that sperm from multiple males are mixed within individual sperm chambers. Spermatangia were also found implanted in the lips of males, providing evidence of same-sex sexual behaviour. To date, studies of cephalopod mating systems have focused on coastal species, and the results of this study add to our growing knowledge of more oceanic species.


Genetic and morphological differentiation among local populations of Japanese top shell Turbo sazaeサザエTurbo sazae地域集団間の遺伝的及び形態的分化

September 2022

·

35 Reads

·

3 Citations

Nihon-suisan-gakkai-shi

Japanese top shell Turbo sazae were collected from 11 locations covering almost the entire distribution range in Japan, and nucleotide sequences of mitochondrial 16S rDNA and COI and shell spine types were analyzed. Nucleotide sequences were segregated into two haplogroups; the frequencies of these haplogroups substantially differed between the Japan Sea and Pacific populations. The mean nucleotide substitution rate between the haplogroups was 1.247% for 16S rDNA and 1.429% for COI. Significant genetic differentiation was also observed between local populations within each ocean basin. Large variations in the frequency of spined and spine-less types and the size of spine were observed even between close-neighboring local populations, for which environmental factors were considered to play a major role.


Fig. 1. The rostrum of a statolith extracted from an immature Heterololigo bleekeri (7th individual at 14°C in Table 1). (A) Light photomicrograph of ground surface (scale bar: 20 μm). (B) The corresponding SEM image with 10 beamed spots (scale bar: 20 μm).
Fig. 2. The standard error of the mean statolith Sr/Ca as a function of the number of replicate observations (grey solid line). Closed dots indicate the average SE values directly calculated from the measurements.
Fig. 3. Relationship between rearing temperature and statolith Sr/Ca of immature Heterololigo bleeleri reared under constant temperature, indicated as individual observations (closed dots) and regression (solid line), with the 95% pointwise confidence interval displayed as a grey band.
Fig. 4. Relationship between statolith growth rate and statolith Sr/Ca at 12°C (closed dots), 14°C (open dots filled with grey), and 16°C (open dots).
Growth rate and statolith Sr/Ca ratio for Heterololigo bleekeri reared under constant temperature
Negative temperature dependence of statolith Sr/Ca and its intraspecific variability in experimentally maintained spear squid Heterololigo bleekeri

August 2022

·

118 Reads

·

5 Citations

Journal of the Marine Biological Association of the UK

The strontium-to-calcium ratio (Sr/Ca) in aragonitic shells and statoliths often depends on temperature, and has been investigated for its potential availability as a sclerochronological record of the temperatures experienced during the life of the animal. Only a few cephalopod species have been subjected to rearing experiments to validate the temperature dependence of statolith Sr/Ca despite the strong demand for estimating their historical ecology, particularly of migratory squid populations. In this context, we examined the relationship between temperature and statolith Sr/Ca in the spear squid, Heterololigo bleekeri , by maintaining wild-caught immature individuals at one of three constant temperatures: 12, 14 or 16°C. A portion of statolith precipitated during the experiment was optically identified by daily increment analysis, and then subjected to Sr/Ca measurement using an electron probe micro-analyser. Regression analysis (N = 29) demonstrated the dependence of statolith Sr/Ca on temperature and the relationship was estimated as an equation Y = 9.93 (±0.29) − 0.11 (±0.02) X . However, ~90% of the total residual variance was accounted for by the among-individual variation of statolith Sr/Ca within each temperature group. Consequently, the 95% confidence interval ranged over ± 7.85°C when the temperature was estimated by inserting a Sr/Ca value into this equation. The statolith Sr/Ca values are unlikely to provide reliable estimates for absolute temperatures, but it may allow reconstruction of a time-series of relative temperatures experienced by a particular individual.


The Effect of Low Temperature on the Early Life Stages of the Walleye Pollock, Gadus chalcogrammus—A Laboratory Study

July 2021

·

126 Reads

·

4 Citations

The walleye pollock Gadus chalcogrammus is an important commercial species in Japan whose larvae and eggs may be negatively affected by the cold water mass from the coastal Oyashio current that is present in the spawning ground of the Japanese Pacific stock of this species. Therefore, we investigated egg and larval specific density, larval mortality, and behavioral response to temperature change during the ontogenetic development of the walleye pollock to understand the effect of this cold surface water mass (<1.5 °C). Egg and larval specific density varied during development but were lower than the corresponding values from the coastal Oyashio waters. Within our study temperature range (0.3–10.0 °C), the number of days to 50% mortality (D50) was high at 3.1 °C. Below and above this temperature, the D50 showed a decreasing trend. Regarding larval response, at 1.5°C and 5.0°C, newly hatched larvae occurred abundantly in the surface layer, irrespective of the surface and rearing temperatures. When these larvae were released into a thermally stratified water column (surface: 1.5 °C, bottom: 5.0 °C), larvae reared at 5.0 °C with the mouth open and yolk sac completely absorbed moved to the lower layers. However, larvae reared at 1.5 °C remained in the surface layer. These results suggest that the cold water mass could negatively affect larval survival and may limit the escape ability of larvae from unfavorable cold conditions.


Estimating Pot Mesh Selectivity for Coon Stripe Shrimp Pandalus hypsinotus by Water Tank Experiment

March 2021

·

41 Reads

The stock level of cone stripe shrimp Pandalus hypsinotus in Funka-Bay of Hokkaido has been estimated to be medium level in recent years; however, because most of the catch is occupied by small individuals, the protection of young shrimp is still an important issue. In this study, we investigated mesh selectivity for several stretched mesh size (32, 35, 39, 43, 46, 52, 65 mm) by water tank experiment. For each experiment, 15 bred shrimps were released into experimental area which installed two netting panels as partitions. The number of shrimps that passed or not passed (retention) the panel during night was recorded, and their carapace length was measured. The retention rate of shrimp in each mesh size decreased as the mesh size expanded: 0.99 (32 mm mesh size) to 0.37 (65 mm mesh size). From the master curve of mesh selectivity, the retention rate of 20 mm carapace length (recruitment size) was estimated as 0.71 at 32 mm mesh size used in the current commercial fishery. The mesh size at which 50% retention length (L50 ) is 20 mm was estimated to be 35.8 mm.


Abundance, horizontal and vertical distribution of epipelagic ctenophores and scyphomedusae in the northern Bering Sea in summer 2017 and 2018: Quantification by underwater video imaging analysis

July 2020

·

71 Reads

·

5 Citations

Deep Sea Research Part II Topical Studies in Oceanography

We examined the abundance and horizontal and vertical distributions of epipelagic ctenophores and scyphomedusae in the northern Bering Sea using an underwater video camera during July of 2017 and 2018. The effects of environmental and biological parameters on the distribution of these species were evaluated by generalized additive modelling (GAM). In 2017, the dominant ctenophore, Bolinopsis infundibulum, was mainly distributed in the north and west of St. Lawrence Island (SLI), and their vertical distribution varied with the region but not by the time of day. We found that B. infundibulum was distributed in the upper pycnocline north of SLI, but below the pycnocline west of SLI. Biological interactions with other gelatinous zooplankton may explain these regional differences in vertical distribution; GAM analysis revealed a negative interaction between B. infundibulum and the large scyphomedusa, Chrysaora melanaster, which occurred in the upper layer in the west of SLI. B. infundibulum may avoid that layer to reduce feeding competition. For the ctenophore, Beroe sp., vertical and horizontal distributions were similar to those of B. infundibulum, and GAM analysis also revealed a positive interaction for both species. As B. infundibulum is an important prey of Beroe sp., a prey-predator interaction may result from their similar horizontal and vertical distributions. Standing stocks of epipelagic ctenophores and scyphomedusae in 2018 were low compared to those in 2017, by a factor of 1/20 (C. melanaster) and1/90 (Beroe sp.). This might be due to annual differences in water mass in this region, in that the thermal conditions characterized by a high abundance of the dominant B. infundibulum in 2017 (<2 and >8 °C) were absent in 2018. As this drastic decrease in standing stock in 2018 was apparent for both ctenophores and scyphomedusae, food availability was hypothesized to be poor that year.


Citations (38)


... It is a critical parameter that directly affects the accuracy of distribution estimates. The TS depends on various parameters, including the sound wave frequency, length of the organism, and swimming orientation (Chu et al., 1993;Mukai, 2004;Yan et al., 2024). ...

Reference:

Acoustic characteristics of Jesogammarus annandalei in Lake Biwa
Broadband target strength of arabesque greenling, Pacific sand lance, and pointhead flounder

ICES Journal of Marine Science

... Yamaguchi et al. (2015Yamaguchi et al. ( , 2018 estimated the migratory routes of Uroteuthis edulis after an experimental evaluation of the negative relationship between statolith Sr:Ca and water temperature. Recently, Hosono et al. (2022) have also shown a similar negative relationship through rearing experiments with Heterololigo bleekeri. However, without a large laboratory rearing tank under controlled temperature, keeping squid under good conditions is difficult even for a short period (Hanlon, 1990;Takahara et al., 2017). ...

Negative temperature dependence of statolith Sr/Ca and its intraspecific variability in experimentally maintained spear squid Heterololigo bleekeri

Journal of the Marine Biological Association of the UK

... Population genetic studies within the Turbinidae family have traditionally employed mitochondrial genes such as cytochrome c oxidase I (COI) and 16S rRNA due to their high mutation rates and maternal inheritance, while nuclear markers like internal transcribed spacer (ITS), 28S rRNA, and microsatellites provide complementary insights into biparental gene flow and recombination events [12][13][14][15]. In T. sazae, Kojima et al. [16] conducted a landmark study examining genetic differentiation among Japanese populations using COI, and Yanagimoto et al. [17] applied COI and 16S rRNA to reveal genetic divergence between the Sea of Japan (East Sea) and Pacific populations. ...

Genetic and morphological differentiation among local populations of Japanese top shell Turbo sazaeサザエTurbo sazae地域集団間の遺伝的及び形態的分化
  • Citing Article
  • September 2022

Nihon-suisan-gakkai-shi

... This finding underscores a crucial point frequently encountered in fish larviculture: maximizing hatching quantity is counterproductive if larval quality and subsequent viability are significantly compromised. Indeed, parallel observations exist in other species; for instance, studies on the tropical snapper Lutjanus carponotatus [31] and the temperate lingcod Ophiodon elongatus [32] similarly report that supra-optimal incubation temperatures can yield superficially high hatch numbers but result in non-viable or severely impaired larvae due to accumulated developmental stress and potentially accelerated, inefficient yolk consumption [33][34][35]. In all the above studies, warmer-than-optimal temperatures tended to shorten the incubation period but at the cost of reduced hatching success and increased malformation or deformity rates in the larvae. ...

The Effect of Low Temperature on the Early Life Stages of the Walleye Pollock, Gadus chalcogrammus—A Laboratory Study

... It is important to determine the vertical distribution of medusae to study their trophic interactions, vertical migration behavior, and spatiotemporal changes under global changes [11,53,54]. However, traditional sampling using plankton nets cannot effectively demonstrate the vertical distribution of jellyfish in shallow sea due to the trawling depths employed, the limited collection efficiency, and the damage caused to the fragile bodies of gelatinous organisms [55,56]. ...

Abundance, horizontal and vertical distribution of epipelagic ctenophores and scyphomedusae in the northern Bering Sea in summer 2017 and 2018: Quantification by underwater video imaging analysis
  • Citing Article
  • July 2020

Deep Sea Research Part II Topical Studies in Oceanography

... However, if the MH lamps are entirely replaced by LED lamps on fishing vessels, the capture efficiency will be significantly reduced. Other so-called optimal light colors for LED light fishing [13][14][15][16][17], such as cyan, green and white, have also been proved by many experiments to be necessarily combined with a certain number of MHs. ...

Swimming speed of Japanese flying squid Todarodes pacificus when attracted by white LED light stimulation白色LED光に誘引されるスルメイカの遊泳速度の測定

Nihon-suisan-gakkai-shi

... These SRs are located in the buccal membrane, which (being within the arms, encircling the mouth) is physically isolated from the oviduct, which opens inside the mantle cavity (Drew 1911;Hanlon et al. 1999Marian 2015. Fertilisation occurs externally and is usually achieved following a series of muscular contractions around the female SRs, releasing sperm to the vicinity of the eggs when depositing them with her arms at spawning (Iwata et al. 2019;Yamamoto et al. 2019). Since sperm transfer takes place without the insertion of male genitalia, the diversification of SSOs in cephalopods is clearly due to factors unrelated to the interaction between male and female genitalia (since there is no direct genital interaction in cephalopods). ...

Close-up observations on the spawning behavior of a captive Japanese flying squid (Todarodes pacificus)

... The thick-solid, thin-solid, and dashed lines indicate the predicted TS for the standardized sample obtained using the DWBA model at TL = 4.2 mm (minimum), 7.5 mm (mean), and 10.2 mm (maximum), respectively. The dashed vertical lines represent the frequency values of 38, 70, 120, 200, and 333 kHz, which are commonly used in the field (Behagle et al., 2017;Yan et al., 2020;Bernardes et al., 2020). ...

Acoustic discrimination between juvenile walleye pollock and pointhead flounder
  • Citing Article
  • November 2019

Fisheries Research

... These surveys revealed seasonal variations in fish length distributions and the characteristics of their target strength (TS) in acoustic monitoring, providing a basis for resource assessment through acoustic methods [54][55][56]. Target strength is a key parameter in acoustic surveys used to estimate fish volume and biomass, primarily influenced by fish length, body shape, and internal gas content (e.g., swim bladders) [57][58][59][60][61]. Acoustic surveys offer broader spatial coverage and greater efficiency compared to traditional trawl surveys, especially when assessing fish abundance over large water areas. ...

Acoustic characteristics of three bladderless fishes
  • Citing Article
  • October 2019

The Journal of the Acoustical Society of America

... A study by Funamoto et al. (2013) suggests that predation on juvenile walleye pollock in the nursery ground, outside of Funka Bay, affects the recruitment variability of the Pacific stock. However, predation by a flatfish, pointhead flounder (Cleisthenes pinetorum), is likely the cause of the predation pressure that affects the recruitment success of the 0-age walleye pollock (Yan et al., 2018). ...

Acoustic Distinction Between Pointhead Flounder and Juvenile Walleye Pollock by Echo Shape and Frequency Characteristics
  • Citing Conference Paper
  • May 2018