Judith A Coppinger's research while affiliated with Royal College of Surgeons in Ireland and other places

Publications (48)

Article
To explore the role of extracellular vesicles (EVs) in chronic lung diseases. EVs are emerging as mediators of intercellular communication and possible diagnostic markers of disease. EVs harbour cargo molecules including RNA, lipids and proteins that they transfer to recipient cells. EVs are intercellular communicators within the lung microenvironm...
Figure 1 Extracellular vesicle (EV) release is upregulated in cystic...
Figure 2 Extracellular vesicle (EV) release can be modulated by cystic...
Figure 3 Extracellular vesicles (EVs) isolated from cystic fibrosis...
Figure 4 Bronchoalveolar lavage fluid (BALF) extracellular vesicles...
Article
Full-text available
Rationale Mutations in the cystic fibrosis transmembrane regulator ( CFTR ) gene form the basis of cystic fibrosis (CF). There remains an important knowledge gap in CF as to how diminished CFTR activity leads to the dominant inflammatory response within CF airways. Objectives To investigate if extracellular vesicles (EVs) contribute to inflammator...
Figure 1: BAG3 is expressed in TNBC cell lines and patient tissues. (A)...
Figure 2: High BAG3 mRNA expression correlates with poorer disease free...
Figure 2: High BAG3 mRNA expression correlates with poorer disease free...
Figure 3: BAG3 regulates cell proliferation, migration and invasion in...
Figure 4: BAG3 interacts with EGFR and components of the EGFR pathway....
Article
Full-text available
Triple-negative breast cancer (TNBC), is a heterogeneous disease characterised by absence of expression of the estrogen receptor (ER), progesterone receptor (PR) and lack of amplification of human epidermal growth factor receptor 2 (HER2). TNBC patients can exhibit poor prognosis and high recurrence stages despite early response to chemotherapy tre...
Figure 3. Targeting the PI3K/Akt/mTOR complex improves CFTR stability...
Figure 4. Autophagy is restored in ΔF508 CFBE41o-cells upon treatment...
Figure 5. PI3K/AKT/mTOR inhibition increases ΔF508 CFTR stability...
Figure 6. Regulation of ΔF508 CFTR stability by inhibitors to the...
Article
Full-text available
Deletion of phenylalanine 508 of the cystic fibrosis transmembrane conductance regulator (ΔF508 CFTR) is a major cause of cystic fibrosis (CF), one of the most common inherited childhood diseases. ΔF508 CFTR is a trafficking mutant that is retained in the endoplasmic reticulum (ER) and unable to reach the plasma membrane. Efforts to enhance exit of...
Table 1.  Demographics of island foxes with systemic amyloidosis...
Figure 1.  Histochemical and immunohistochemical staining of island fox...
Figure 2.  Congo red staining and electron microscopy of amyloid.
A:...
Table 2.  Organs affected in cases of systemic amyloidosis.
Figure 3.  SDS-PAGE and western blot of the dominant insoluble protein...
Article
Full-text available
Amyloid A (AA) amyloidosis is a debilitating, often fatal, systemic amyloid disease associated with chronic inflammation and persistently elevated serum amyloid A (SAA). Elevated SAA is necessary but not sufficient to cause disease and the risk factors for AA amyloidosis remain poorly understood. Here we identify an extraordinarily high prevalence...
Article
Full-text available
Rhodopsin is a G protein-coupled receptor essential for vision and rod photoreceptor viability. Disease-associated rhodopsin mutations, such as P23H rhodopsin, cause rhodopsin protein misfolding and trigger endoplasmic reticulum (ER) stress, activating the unfolded protein response (UPR). The pathophysiologic effects of ER stress and UPR activation...
Article
Senescence is a prominent solid tumor response to therapy in which cells avoid apoptosis and instead enter into prolonged cell cycle arrest. We applied a quantitative proteomics screen to identify signals that lead to therapy-induced senescence (TIS) and discovered that Bcl2-associated athanogene 3 (Bag3) is upregulated after adriamycin treatment i...
FIG. 1. Senescence is induced in MCF7 cells. A, MCF7 breast cancer...
FIG. 2. Quantitative Proteomic Analysis of Therapy Induced Senescence...
FIG. 3. Bag3 is up-regulated in TIS. A, A table of 10 proteins...
FIG. 4. Bag3 promotes the senescent phenotype and prevents apoptosis....
FIG. 5. Bag3 interacts with the Major Vault Complex and stabilizes it....
Article
Full-text available
Senescence is a prominent solid tumor response to therapy in which cells avoid apoptosis and instead enter into prolonged cell cycle arrest. We applied a quantitative proteomics screen to identify signals that lead to therapy-induced senescence (TIS) and discovered that Bcl2-associated athanogene 3 (Bag3) is upregulated after adriamycin treatment i...
Data
Peptides recovered in cross-linking experiments. Consensus peptides recovered in the cross-linking of Hsp90 with WT- or ΔF508-NBD1. The color of the respective peptides is in accordance with the highlighted peptides in Fig. 4A. The location of these peptides in WT- and ΔF508-CFTR are illustrated in the sequence. The corresponding Hsp90 cross-linked...
Data
Validation of absolute quantification method for rescue of CFTR. (A) Absolute abundances of Hsp90 peptides (ng/µl) calculated by SRM-MS: (1) ELISNASDALDK (2) ELISNANSDALDKIR ((3) ADLINNLGTIAK (4) NPDDITNEEYGEFYK. (B) Absolute abundances of Hsc70 peptides (ng/µl) calculated by SRM-MS: (1) NQVAMNPTNTVFDAK (2) SFYPEEVSSMVLTK (3) SQIHDIVLVGGSTR (4) SIN...
Figure 1. Quantification of CFTR, Hsc70 and Hsp90 in CFTRcontaining...
Table 2 . Stoichiometry of the DF508 CFTR interaction with core...
A. Absolute abundance (ng/µl) of Hsp90 calculated by 15N protein...
A. The absolute levels of CFTR, Hsp90 and Hsc70, expressed in pmol, in...
. A. Western blot analysis of HEK293 cells stably expressing ΔF508-CFTR...
Article
Full-text available
Protein folding is the primary role of proteostasis network (PN) where chaperone interactions with client proteins determine the success or failure of the folding reaction in the cell. We now address how the Phe508 deletion in the NBD1 domain of the cystic fibrosis (CF) transmembrane conductance regulator (CFTR) protein responsible for cystic fibro...
Data
▵F508 fails to exist the ER when bound to chaperones at physiological temperatures. Western blot analysis of CFBE cells treated with 50 μM MG132 or vehicle control for 6 h at 37°C. Data shown is the mean ± SD, n = 3. (TIF)
Article
Mitotic kinases orchestrate cell cycle processes by phosphorylation of cell cycle regulators. DDA3, a spindle-associated phosphor-protein, is a substrate of mitotic kinases that control chromosome movement and spindle microtubule (MT) dynamics. Through a mass spectrometry analysis, we identified phosphorylation sites on the endogenous mitotic DDA3,...
Figure 1. Domain structure of Aha1. (A) Schematic of Aha1 domains....
Figure 2. Effect of increasing Aha1 on Hsp90 binding and ATPase. (A)...
Table 2 . Cross-linked peptides
Figure 3. Molecular footprinting of the interaction between Hsp90 and...
Figure 4. Analysis of binding of Aha1 cross-linked to Hsp90. (A) A...
Article
Full-text available
The activator of Hsp90 ATPase 1, Aha1, has been shown to participate in the Hsp90 chaperone cycle by stimulating the low intrinsic ATPase activity of Hsp90. To elucidate the structural basis for ATPase stimulation of human Hsp90 by human Aha1, we have developed novel mass spectrometry approaches that demonstrate that the N- and C-terminal domains o...
Article
DDA3 is a microtubule-associated protein that controls chromosome congression and segregation by regulating the mitotic spindle. Depletion of DDA3 alters spindle structure, generates unaligned chromosomes at metaphase, and delays the mitotic progression. Through a mass spectrometry analysis, we found that DDA3 is phosphorylated on Ser225 during mit...
TABLE 1 Mass spectral identification of rod components from A431 cells
FIGURE 2. Isolated rods following OptiPrep gradient fractionation....
FIGURE 6. Rods formed in vitro from purified actin and ADF/cofilin....
FIGURE 6. Rods formed in vitro from purified actin and ADF/cofilin....
FIGURE 7. Time course of rod formation following ATP depletion. A431...
Article
Full-text available
Cofilin-actin bundles (rods), which form in axons and den-drites of stressed neurons, lead to synaptic dysfunction and may mediate cognitive deficits in dementias. Rods form abundantly in the cytoplasm of non-neuronal cells in response to many treatments that induce rods in neurons. Rods in cell lysates are not stable in detergents or with added ca...
Data
Cofilin-actin bundles (rods), which form in axons and den-drites of stressed neurons, lead to synaptic dysfunction and may mediate cognitive deficits in dementias. Rods form abundantly in the cytoplasm of non-neuronal cells in response to many treatments that induce rods in neurons. Rods in cell lysates are not stable in detergents or with added ca...
Article
Full-text available
Cofilin-actin bundles (rods), which form in axons and dendrites of stressed neurons, lead to synaptic dysfunction and may mediate cognitive deficits in dementias. Rods form abundantly in the cytoplasm of non-neuronal cells in response to many treatments that induce rods in neurons. Rods in cell lysates are not stable in detergents or with added cal...
FIG. 1. Localization and membrane topology of NET39. (A) HeLa cells...
FIG. 2. NET39 is a member of the LPP family but demonstrates no...
FIG. 3. NET39 is present at high levels in striated muscle tissue and...
FIG. 4. NET39 antagonizes C2C12 cell myogenic differentiation. (A)...
FIG. 5. Identification of NET39-associated proteins in myotubes by...
Article
Full-text available
Recently, several transmembrane proteins of the nuclear envelope have been implicated in regulation of signaling and gene expression. Here we demonstrate that the nuclear lamina-associated nuclear envelope transmembrane protein NET39 (Ppapdc3) functions as a negative regulator of myoblast differentiation, in part through effects on mTOR signaling....
Article
The microtubule depolymerase Kif2a controls spindle assembly and dynamics and is essential for chromosome congression and segregation. Through a proteomic analysis, we identified Kif2a as a target for regulation by the Polo-like kinase Plk1. Plk1 interacts with Kif2a, but only in mitosis, in a manner dependent on its kinase activity. Plk1 phosphory...
Article
Microtubules (MTs) are nucleated from centrosomes and chromatin. In addition, MTs can be generated from preexiting MTs in a gamma-tubulin-dependent manner in yeast, plant, and Drosophila cells, although the underlying mechanism remains unknown. Here we show the spindle-associated protein FAM29A promotes MT-dependent MT amplification and is required...
Figure 1. Bone marrow, MCF7 and MDA-MB231 cells contain a side...
Figure 2. MCF7 and MDA-MB231 cells express markers associated with...
Figure 3. MCF7 and MDA-MB231 SP cells are more resistant to chemotherapy  
Figure 5. Proteomic Flow Chart  
Figure 6. Detection of identified Proteins in Mammalian Cells by...
Article
Full-text available
A multifaceted approach is presented as a general strategy to identify new drug targets in a breast cancer stem cell-containing side population. The approach we have utilized combines side population cell sorting and stable isotope labeling by amino acids in cell culture with mass spectrometry to compare and identify proteins with differential expr...
Fig. 4. RCS1 controls the metaphase-to-anaphase transition. (A)...
Article
Full-text available
The anaphase-promoting complex/cyclosome (APC/C) controls the onset of anaphase by targeting securin for destruction. We report here the identification and characterization of a substrate of APC/C, RCS1, as a mitotic regulator that controls the metaphase-to-anaphase transition. We showed that the levels of RCS1 fluctuate in the cell cycle, peaking...
FIGURE 1. Activation of Plk1 is regulated at the G2/M transition 
FIGURE 2. Bora activates Plk1 and controls mitotic entry 
FIGURE 3. Bora and Aurora A synergistically activate Plk1 
FIGURE 4. Aurora A activates Plk1 and controls mitotic entry 
Article
Full-text available
A central question in the study of cell proliferation is, what controls cell-cycle transitions? Although the accumulation of mitotic cyclins drives the transition from the G2 phase to the M phase in embryonic cells, the trigger for mitotic entry in somatic cells remains unknown. We report that the synergistic action of Bora and the kinase Aurora A...
Figure 1. Bora is a cell cycle protein interacting with Plk1. (A and B)...
Figure 2. Bora is degraded in a Plk1-and proteasome-dependent manner....
Figure 3. Ubiquitination of Bora requires Plk1. (A) In vitro...
Figure 7. Knockdown of Bora delays anaphase onset. (A and B) Analysis...
Figure 8. Bora controls spindle stability and microtubule growth in...
Article
Full-text available
Through a convergence of functional genomic and proteomic studies, we identify Bora as a previously unknown cell cycle protein that interacts with the Plk1 kinase and the SCF-beta-TrCP ubiquitin ligase. We show that the Bora protein peaks in G2 and is degraded by proteasomes in mitosis. Proteolysis of Bora requires the Plk1 kinase activity and is m...
Figure 5. DDA3 recruits Kif2a to the mitotic spindle and spindle poles....
Figure 7. DDA3 directly interacts with Kif2a. (A) Myc-DDA3 was...
DDA3 is a spindle-associated cell cycle protein. (A–C) Shown are...
DDA3 controls spindle dynamics. (A–C) HeLa cells were transfected with...
Article
Full-text available
Dynamic turnover of the spindle is a driving force for chromosome congression and segregation in mitosis. Through a functional genomic analysis, we identify DDA3 as a previously unknown regulator of spindle dynamics that is essential for mitotic progression. DDA3 depletion results in a high frequency of unaligned chromosomes, a substantial reductio...
Figure 1. Modulation of platelet aggregation and protein release by...
Figure 2. Time course of collagen-stimulated platelet releasate. Equal...
Figure 4. Aspirin decreases agonist-induced release of platelet...
Article
Full-text available
Modulation of the proteins released during activation is one mechanism whereby aspirin may influence platelet-mediated human disease. We investigated the effect of aspirin on the platelet releasate using mass spectrometry and found that different agonists evoked different releasate profiles, with aspirin having a general moderating effect on the am...
Article
This chapter describes an approach to isolate, separate, and identify the contents of the platelet releasate, a fraction highly enriched for platelet granular and exosomal contents. Investigation into such a fraction will improve our understanding of platelet interactions with other cells, vascular remodeling, coagulation, and vessel growth.
Article
The platelet releasate comprises of a multitude of inflammatory and vasoactive substances, which can attract atherogenic leukocytes from the circulation, activate endothelial cells and stimulate vessel growth and repair by triggering vascular cell proliferation, migration, and inflammation. Thus, platelets are believed central in the development an...
Article
Platelets are anucleate, discoid cell fragments measuring 1.5 to 3.0 μM in diameter. They are derived from bone-marrow megakaryocytes that are normally maintained in a nonadhesive state, whereby they circulate freely in blood. Anucleate platelets are unique to mammals, with nonmammalian vertebrates (such as zebrafish) possessing nucleated thrombocy...
Article
The pathways that distinguish transport of folded and misfolded cargo through the exocytic (secretory) pathway of eukaryotic cells remain unknown. Using proteomics to assess global cystic fibrosis (CF) transmembrane conductance regulator (CFTR) protein interactions (the CFTR interactome), we show that Hsp90 cochaperones modulate Hsp90-dependent sta...
Article
Dept of Clinical Pharmacology, Royal College of Surgeons in Ireland, Dublin 2 Coppinger JA, O Connor RI, Cagney G, Cox D & Maguire PB. Recent evidence suggests that certain cytokines secreted by activated platelets can promote the development of atherosclerosis and thrombosis e.g the platelet specific cytokine platelet factor 4 (PF4) facilitates ma...
Table 1 : Proteins released from thrombin-activated platelets...
Table 2 ). Seventy percent of these 81 were identified in
Article
Full-text available
Proteins secreted by activated platelets can adhere to the vessel wall and promote the development of atherosclerosis and thrombosis. Despite this biologic significance, however, the complement of proteins comprising the platelet releasate is largely unknown. Using a proteomics approach, we have identified more than 300 proteins released by human p...
FIG. 4. Identifying platelet-specific genes. A total of 12,625...
FIG. 2. Correlation of log-transformed signal intensity from two...
FIG. 5. Information flow in experiments comparing transcriptome and...
Article
Full-text available
Platelets, while anucleate, contain RNA, some of which is translated into protein upon activation. Hypothesising that the platelet proteome is reflected in the transcriptome, we identified 82 proteins secreted from activated platelets and compared these, as well as published proteomic data, to the transcriptional profile. We also compared the trans...

Citations

... This disease is very common in dogs. So far it has not been reported in the blue fox (Alopex lagopus), while in the grey fox (Urocyon cinereoargenteus) it was not reported until 2016 [Elisen et al. 2004, Gaffney et al. 2014, Gaffney et al. 2016, Rising et al. 2017]. ...
... Platelets can interact with and signal endothelial cells in a variety of ways (6,34,90). In this section we focus on interactions that influence alveolar capillary barrier function because of its central importance in ALI/ARDS, particularly in the early edematous phase (7,30). ...
... Several preclinical and clinical trials of ASA supported its antitumor potential [6,7]. The mechanisms underlying antitumor action of ASA interrelate with its antiinflammatory properties, which are generally result from the inhibition of activity of cyclooxygenases [8,9] along with diminishing platelet activation and thrombosis involved in the cancer progression and metastasis [10,11]. Other reported mechanisms of ASA and its active metabolite SA comprise the inhibition of IkB kinase/NF-kB pathway in vitro and in vivo [12,13], allosteric activation of AMP-activated kinase [14], uncoupling of the respiratory chain by transporting protons across the inner mitochondrial membrane [15]. ...
... In addition, studies revealed unmapped protein-protein interactions of BAG3 with Cells 2020, 9, 2416 3 of 40 proteins such as IFITM-2 (interferon-induced transmembrane protein 2) or STK38 (serine/threonine-protein kinase 38) [69][70][71][72]. Proteomic studies have fundamentally expanded the interactome of BAG3 [33,[72][73][74][75][76][77]. ...
... Given the PIMREG function on proliferation and cell-cycle control 9,10,31,34,35 , together with the ndings presented in this study that PIMREG participates in the DNA damage response with ATM and ATR, it is tempting to speculate that PIMREG may play a role in the ATR-and ATM-dependent checkpoint pathways to block cell cycle progression. ...
... During mitosis, Kif2A localizes to spindle poles where it depolymerizes microtubule minus ends [10,15,16], thereby controlling the rate of poleward microtubule flux. Transport of Kif2A to spindle poles is ensured by minus-end-directed motor protein dynein/dynactin [10] and is increased by interaction with microtubule-associated Dda3 protein, whose expression and phosphorylation are markedly elevated in mitosis [17,18]. Depletion of either Dda3 or Kif2A increases mitotic spindle size [10,17]. ...
... A substantial amount of evidence indicates that hyperactive cofilin forms rods-shape aggregates composed of cofilin and saturated actin filament bundles, known as cofilin/actin rods (Nishida et al., 1987;Minamide et al., 2000Minamide et al., , 2010. Cofilin/actin rods formation in neurons represents a hallmark pathological feature of many neurodegenerative diseases such as Huntington's disease and AD, where it further promotes the progression of the disease (Minamide et al., 2000;Cichon et al., 2012). ...
... α-and dense-granules seem to derive, like lysosomes, from multivesicular precursors [49][50][51]. The content of α-granules consists of a large variety of proteins, such as adhesive molecules (e.g., fibrinogen, VWF, fibronectin, P-selectin), coagulation factors (e.g., FV, FIX, FXIII), anticoagulants (e.g., antithrombin), fibrinolytic proteins (e.g., plasminogen), and growth factors, immune mediators, and integral membrane proteins (e.g., αIIb3, P-selectin) [52,53]. Thus, α-granule proteins can be involved in a large spectrum of physiological functions, such as normal and pathological haemostasis, inflammation, wound healing, antimicrobial response, and cancer metastasis [54,55]. ...
... In postmortem AD brains, Aha1 colocalized with pathogenic tau and correlated with disease progression [90]. In addition to tau, Aha1 stabilizes other Hsp90 clients including mutant cystic fibrosis transmembrane conductance regulator, CFTR, which causes cystic fibrosis [59,100], and mutant melanocortin-4 receptor, another misfolded transmembrane protein [67]. Aha1 may also have a role in RNA processing and DNA repair [96]. ...
... However, the system also has limitations. Whereas chaperone overexpression typically improves the folding capacity of the chaperone system, overexpression of specific chaperones was shown to disrupt folding [19][20][21][22][23] . For example, overexpression of the folding enzyme FKBP51 in a tau transgenic mouse model resulted in accumulation of tau and its toxic oligomers 21 . ...