John J. Voorhees’s research while affiliated with Concordia University Ann Arbor and other places

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Publications (827)


Manhattan plot summarising genome-wide associations with psoriasis susceptibility
x-axis, genomic position; y-axis, −log10(P-value) of association (two-sided Z-test, unadjusted for multiple tests); red and green points, regions previously and newly associated, respectively, with psoriasis susceptibility at genome-wide significance (P = 5 × 10⁻⁸) in European ancestry populations; solid horizontal line, genome-wide significance threshold; dotted horizontal line, y-axis break at 10⁻³⁰; chromosomes (labelled 1–22) are alternately shaded for clarity.
Statistical and functional fine-mapping
A Comparison of 95% Bayesian credible sets to previous GWAS meta-analysis. Each point represents a different association signal established in the previous meta-analysis (Tsoi et al., 2017). Point colour indicates direction of change, blue dashed line indicates equality. B Prioritisation of protein-altering variants. Points represent protein-altering variants identified in Bayesian credible sets for independent psoriasis signals; x-axis: posterior probability of causality from statistical fine-mapping analysis, y-axis: CADD score estimating deleteriousness of protein altering variant, point colour: whether corresponding susceptibility signal is in a known or newly reported genomic region and whether primary or secondary signal. Note the TRAF3IP2 variant rs33980500 is discussed in the main text. C Highlighted high-confidence regulatory variants derived from TURF analysis. For each variant, bars show the generic and tissue-specific regulatory probabilities (y-axis) estimated by TURF for all tissues (x-axis). Blood and skin are highlighted in orange and blue, respectively.
Relative expression of TWAS genes in single-cell skin transcriptomes of psoriasis patients
Expression level (cell colour; purple-red scale) represents mean value among cells in the corresponding cell type/condition (x-axis). For each gene (y-axis), the values were standardised and expression patterns were used for clustering (dendrogram, left hand side). Five clusters were identified (CL1-CL5, grey/black bars, left hand side) and labelled according to the cell types that exhibit highest expression for the genes in the cluster. PP, psoriasis lesions; PN, non-lesional skin; Lymphatic Endo, lymphatic endothelial cells; IFE, interfollicular epidermis. Clusters are identified based on enrichment for: (1) eccrine cells; (2) keratinocytes and melanocytes; (3) dendritic cells; (4) endothelial and lymphatic endothelial cells and fibroblasts; (5) T cells.
GWAS meta-analysis of psoriasis identifies new susceptibility alleles impacting disease mechanisms and therapeutic targets
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February 2025

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138 Reads

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4 Citations

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Philip E. Stuart

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Psoriasis is a common, debilitating immune-mediated skin disease. Genetic studies have identified biological mechanisms of psoriasis risk, including those targeted by effective therapies. However, the genetic liability to psoriasis is not fully explained by variation at robustly identified risk loci. To refine the genetic map of psoriasis susceptibility we meta-analysed 18 GWAS comprising 36,466 cases and 458,078 controls and identified 109 distinct psoriasis susceptibility loci, including 46 that have not been previously reported. These include susceptibility variants at loci in which the therapeutic targets IL17RA and AHR are encoded, and deleterious coding variants supporting potential new drug targets (including in STAP2, CPVL and POU2F3). We conducted a transcriptome-wide association study to identify regulatory effects of psoriasis susceptibility variants and cross-referenced these against single cell expression profiles in psoriasis-affected skin, highlighting roles for the transcriptional regulation of haematopoietic cell development and epigenetic modulation of interferon signalling in psoriasis pathobiology.

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Skin Ageing

March 2024

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62 Reads

Skin ageing is an inevitable phenomenon with several characteristic manifestations. The genetic, molecular, and cellular factors that contribute to aged skin are becoming increasingly understood. As our knowledge of how skin ages advances, the potential therapeutic opportunities for skin rejuvenation are similarly increased and improved. In this chapter, the process of skin ageing based on both intrinsic factors and extrinsic influences across the spectrum of skin types is discussed. The biological mechanisms that contribute to these phenomena are further discussed, as well as the progress and opportunities for therapeutic interventions.


Implications for cumulative and prolonged clinical improvement induced by cross‐linked hyaluronic acid: An in vivo biochemical/microscopic study in humans

January 2024

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46 Reads

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7 Citations

Experimental Dermatology

In photoaged human skin, type I collagen fragmentation impairs dermal extracellular matrix (ECM) integrity, resulting in collapsed/contracted fibroblasts with reduced type I procollagen synthesis. Injections of cross‐linked hyaluronic acid (CL‐HA) reverse these deleterious changes. To investigate the time course and effects of biochemical changes induced by injected CL‐HA, particularly whether fibroblast activation leads to accumulation/deposition of dermal collagen, we injected CL‐HA into photoaged skin of human participants over 60 years‐old and performed biochemical/microscopic analyses of skin samples. Beginning 1 week post‐injection and lasting 6–9 months, fibroblasts exhibited activation, including increased immunostaining and gene expression of markers of type I collagen synthesis, such as heat shock protein 47 and components of the transforming growth factor‐β pathway. At 1 week post‐injection, multiphoton microscopy revealed elongation/stretching of fibroblasts, indicating enhanced dermal mechanical support. At 4 weeks, second‐harmonic generation microscopy revealed thick collagen bundles densely packed around pools of injected CL‐HA. At 12 months, accumulation of thick collagen bundles was observed and injected CL‐HA remained present in substantial amounts. Thus, by occupying space in the dermal ECM, injected CL‐HA rapidly and durably enhances mechanical support, stimulating fibroblast elongation and activation, which results in thick, densely packed type I collagen bundles accumulating as early as 4 weeks post‐injection and continuing for at least a year. These observations indicate that early and prolonged clinical improvement following CL‐HA injection results from space‐filling and collagen deposition. As type I collagen has an estimated half‐life of 15 years, our data provide the foundations for optimizing the timing/frequency of repeat CL‐HA injections.


GWAS meta-analysis of psoriasis identifies new susceptibility alleles impacting disease mechanisms and therapeutic targets

October 2023

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296 Reads

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16 Citations

Psoriasis is a common, debilitating immune-mediated skin disease. Genetic studies have identified biological mechanisms of psoriasis risk, including those targeted by effective therapies. However, the genetic liability to psoriasis is not fully explained by variation at robustly identified risk loci. To move towards a saturation map of psoriasis susceptibility we meta-analysed 18 GWAS comprising 36,466 cases and 458,078 controls and identified 109 distinct psoriasis susceptibility loci, including 45 that have not been previously reported. These include susceptibility variants at loci in which the therapeutic targets IL17RA and AHR are encoded, and deleterious coding variants supporting potential new drug targets (including in STAP2, CPVL and POU2F3). We conducted a transcriptome-wide association study to identify regulatory effects of psoriasis susceptibility variants and cross-referenced these against single cell expression profiles in psoriasis-affected skin, highlighting roles for the transcriptional regulation of haematopoietic cell development and epigenetic modulation of interferon signalling in psoriasis pathobiology.


Retrospective pharmacogenetic study of psoriasis highlights the role of KLK7 in TNF signaling

September 2023

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57 Reads

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2 Citations

British Journal of Dermatology

Background Multiple treatment options are available for the management of psoriasis, but clinical response varies among individual patients and no biomarkers are available to facilitate treatment selection for improved patient outcomes. Objectives To utilize retrospective data to conduct a pharmacogenetic study to explore the potential genetic pathways associated with drug response in the treatment of psoriasis. Methods We conducted a retrospective pharmacogenetic study using self-evaluated treatment response from 1942 genotyped patients with psoriasis. We examined 6 502 658 genetic markers to model their associations with response to six treatment options using linear regression, adjusting for cohort variables and demographic features. We further utilized an integrative approach incorporating epigenomics, transcriptomics and a longitudinal clinical cohort to provide biological implications for the topmost signals associated with drug response. Results Two novel markers were revealed to be associated with treatment response: rs1991820 (P = 1.30 × 10–6) for anti-tumour necrosis factor (TNF) biologics; and rs62264137 (P = 2.94 × 10–6) for methotrexate, which was also associated with cutaneous mRNA expression levels of two known psoriasis-related genes KLK7 (P = 1.0 × 10–12) and CD200 (P = 5.4 × 10–6). We demonstrated that KLK7 expression was increased in the psoriatic epidermis, as shown by immunohistochemistry, as well as single-cell RNA sequencing, and its responsiveness to anti-TNF treatment was highlighted. By inhibiting the expression of KLK7, we further illustrated that keratinocytes have decreased proinflammatory responses to TNF. Conclusions Our study implicates the genetic regulation of cytokine responses in predicting clinical drug response and supports the association between pharmacogenetic loci and anti-TNF response, as shown here for KLK7.


Single cell and spatial sequencing define processes by which keratinocytes and fibroblasts amplify inflammatory responses in psoriasis

June 2023

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534 Reads

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114 Citations

The immunopathogenesis of psoriasis, a common chronic inflammatory disease of the skin, is incompletely understood. Here we demonstrate, using a combination of single cell and spatial RNA sequencing, IL-36 dependent amplification of IL-17A and TNF inflammatory responses in the absence of neutrophil proteases, which primarily occur within the supraspinous layer of the psoriatic epidermis. We further show that a subset of SFRP2⁺ fibroblasts in psoriasis contribute to amplification of the immune network through transition to a pro-inflammatory state. The SFRP2⁺ fibroblast communication network involves production of CCL13, CCL19 and CXCL12, connected by ligand-receptor interactions to other spatially proximate cell types: CCR2⁺ myeloid cells, CCR7⁺LAMP3⁺ dendritic cells, and CXCR4 expressed on both CD8⁺ Tc17 cells and keratinocytes, respectively. The SFRP2⁺ fibroblasts also express cathepsin S, further amplifying inflammatory responses by activating IL-36G in keratinocytes. These data provide an in-depth view of psoriasis pathogenesis, which expands our understanding of the critical cellular participants to include inflammatory fibroblasts and their cellular interactions.




Citations (45)


... For several common diseases, genetic prediction using polygenic risk scores (PRS) can 164 identify significant proportions of individuals with increased disease risk (18) While psoriasis susceptibility has a strong genetic basis, with heritability of more than 60% 169 (21), and over 100 established susceptibility loci (22) there is comparatively little evidence 170 on the genetic involvement in disease severity. Several small studies have tested a limited 171 number of candidate genetic variants for associations with severity (23) as assessed using 172 objective measures of skin involvement or health care use proxies and report associations 173 ...

Reference:

Genetic liability to psoriasis predicts severe disease outcomes
GWAS meta-analysis of psoriasis identifies new susceptibility alleles impacting disease mechanisms and therapeutic targets

... 26 Locally, a collagenous matrix was deposited within the implanted HA, concomitant with progressive gel absorption. Mechanical stretching of the cell following tissue filling, 27 direct contact with key cell receptors (ie, CD44), 28 and local inflammation following injection have been reported to directly influence collagen secretion. When used in accordance with the instructions for use, RHA4 produced only a few mild and transient AEs, in line with those commonly reported for dermal fillers and mostly related to the injection itself. ...

Implications for cumulative and prolonged clinical improvement induced by cross‐linked hyaluronic acid: An in vivo biochemical/microscopic study in humans
  • Citing Article
  • January 2024

Experimental Dermatology

... Regarding genetic background, numerous studies have focused on identifying psoriasis susceptibility loci that are associated with its pathogenesis. Large-scale case-control Genome-Wide Association Studies (GWAS) for psoriasis have revealed that many single-nucleotide polymorphisms (SNPs) linked to the condition are located within genes involved in adaptive and innate immune responses crucial for T helper 17 cell activation (Dand et al., 2023). These genes include those encoding the human leukocyte antigen (HLA)-C, interleukin IL-23 receptor, IL-23A, IL-12B, and TRAF3-interacting protein 2 (Ogawa & Okada, 2020;Wang et al., 2020;J. ...

GWAS meta-analysis of psoriasis identifies new susceptibility alleles impacting disease mechanisms and therapeutic targets

... High pigmentation is generally protective and is able to provide a 500-fold level of protection from ultraviolet (UV) radiation [2]. The main clinical features of chrono-aging include dryness, homogeneous color, atrophy, and fine wrinkling [3]. Extrinsic factors are, to varying degrees, partially controllable. ...

Skin Ageing
  • Citing Chapter
  • October 2016

... Recent studies have shown that skin aging is not merely the functional decline in a single cell type but rather the result of complex interactions among multiple cell populations [9][10][11] (including keratinocytes, fibroblasts, immune cells, etc.). In young skin, the epidermis and dermis maintain dynamic coordination through various cytokines and signaling pathways (such as TGF-β, Wnt/β-catenin, Notch, etc.), maintaining efficient extracellular matrix renewal and antioxidant defense capabilities, ensuring barrier integrity To further elucidate the developmental trajectories of skin keratinocytes in young and aged individuals, we performed pseudotime analysis using "Monocle 2". ...

Single cell and spatial sequencing define processes by which keratinocytes and fibroblasts amplify inflammatory responses in psoriasis

... The compression moduli of SEs and RTA-SEs show no significant difference, both around 100 kPa, though RTA-SEs exhibit a slight increase in compressive moduli (Fig. SI 8). This result aligns with previous studies that highlight RTA's role in facilitating ECM reconstruction [101,107,108], further proving that SEs can serve as an effective platform for testing. ...

Skin aging from the perspective of dermal fibroblasts: the interplay between the adaptation to the extracellular matrix microenvironment and cell autonomous processes
  • Citing Article
  • April 2023

... ;https://doi.org/10.1101https://doi.org/10. /2024 CRISPR KO N/TERT cell line using established methods (Sarkar et al., 2023) alongside mock sgRNA controls for the tubulin alpha pseudogene (see Methods and Fig. 4B-C). ...

Keratinocytes sense and eliminate CRISPR DNA through STING/IFN-κ activation and APOBEC3G induction

The Journal of clinical investigation

... Proses penuaan yang terjadi pada kulit menyebabkan penurunan sel epidermis dan kolagen pada lapisan dermis. Penurunan jumlah sel tersebut mengakibatkan ketebalan kedua lapisan tersebut menjadi berkurang (2). Selain itu proses penuaan juga berdampak pada lapisan epidermis yang bisa menimbulkan efek negatif pada kulit serta meningkatkan risiko kerusakan kulit seperti disfungsi kulit sebagai barrier, lambatnya penyembuhan luka serta kanker kulit (2,3). ...

Matrix Metalloproteinase-1 Expression in Fibroblasts Accelerates Dermal Aging and Promotes Papilloma Development in Mouse Skin
  • Citing Article
  • March 2023

Journal of Investigative Dermatology

... TREM-1 is a surface receptor implicated in innate and adaptive immunity that amplifies infectionrelated inflammation, suggesting a potential role for these processes in AD pathogenesis.24 In recent years, the application of RNA-seq has expanded beyond skin biopsy specimens to include samples obtained through noninvasive tape stripping (TS).67 This technique involves the removal of the skin's SC using adhesive tape, such as Scotch tape.Intriguingly, RNA-seq analyses of tape-stripped samples have identified genes not only related to keratinocytes but also those associated with lymphocytes, including CD1A, CD4, IL-13, IL-17, and TARC. ...

Noninvasive Tape-Stripping with High-Resolution RNA Profiling Effectively Captures a Preinflammatory State in Nonlesional Psoriatic Skin
  • Citing Article
  • November 2021

Journal of Investigative Dermatology

... The association signal peaks at rs12189871 (odds ratio [OR]: 3.31, 95% confidence interval [CI] 3.21-3.40, P = 1.8 × 10 −1524 ) but genome-wide significant evidence of association (P < 5 × 10 −8 ) was observed from positions chr6:25,622,875 telomeric to and chr6:33,971,609 centromeric to the MHC, reflecting multiple independent associations and complex patterns of linkage disequilibrium (LD) 22 (Supplementary Fig. 1). ...

Transethnic analysis of psoriasis susceptibility in South Asians and Europeans enhances fine-mapping in the MHC and genomewide
  • Citing Article
  • November 2021

Human Genetics and Genomics Advances