João Marcelo Alvarenga Braga’s research while affiliated with Instituto de Pesquisas Jardim Botânico do Rio de Janeiro and other places

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Publications (140)


Figure 1 -a-j. Myrcia colpodes in fresh state -a. trunk with papery plates attached; b. trunk after bark peeling; c. young leaves; d. adaxial surface of leaves, detail: midvein raised; e. abaxial surface of leaves, detail: petioles slightly pulvinate and tomentose; f. fflowering branch with flower buds (detail: uniflorescences swollen at base in upper arrowhead, and bracts subtending uniflorescences in lower arrowhead); g. pendular inflorescence; h. detail of a typical terminal portion of uniflorescences axes, flower buds and a terminal post-anthetic flower; i. post-anthetic flowers after stamen fall, showing the sericeous staminal ring and the long style; j. immature fruit. (a-f. Fernandes 1006; g-i. Fernandes 1060; j. Fernandes 1484). Photos: a-b. Thiago Fernandes; c-i. Carlos Ferreira.
Figure 2 -a-e. Myrcia colpodes in dry state -a. leaf adaxial surface (detail: raised midvein); b. leaf abaxial surface (detail: corky petiole and tomentose indumentum); c. detail of a typical terminal portion of uniflorescences axes with flower buds; d. post-anthetic flowers showing the pubescent staminal ring; e. lateral view of an immature fruit. (a-c. Fernandes 1006; d. Fernandes 1060; e. Fernandes 1484).
Figure 3 -Map with the current known occurrence records of Myrcia colpodes and M. rubiginosa. White lines represent limits between municipalities in the state Rio de Janeiro.
Figure 4 -a-j. Myrcia rubiginosa in fresh state -a. trunk with rectangular strips; b. leaf adaxial surface (detail: raised midvein); c. leaf abaxial surface (detail: indumentum); d. young leaves; e. flowering branch with pendular inflorescences; f. uniflorescence (point of insertion is omitted, arrowhead points to the peduncle, i.e., first internode); g. lateral axis with flower buds and post-anthetic flowers; h. fruiting branch; i. topside detail of a fruit showing marcescent calyx lobes; j. mature fruit with dry calyx lobes. (a-g. Fernandes 934; h-i. Fernandes 1007; j. Fernandes 1088). Photos: Thiago Fernandes.
Figure 5 -a-e. Myrcia rubiginosa in dry state -a. leaf adaxial surface; b. leaf abaxial surface; c. detail of a typical terminal portion of uniflorescences axes with flower buds; d. open flowers showing the horizontal tearing between the calyx lobes; e. frontal view of an immature fruit. (a-d. Fernandes 934; e. Fernandes 1007).
Extended description and taxonomic notes on two recently rediscovered Myrcia (Myrtaceae) in the Brazilian Atlantic Forest
  • Article
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March 2025

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127 Reads

Rodriguesia

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Eve J. Lucas

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Thais Nogales Vasconcelos

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João Marcelo Alvarenga Braga

In this paper, we present comprehensive data on two endemic and threatened species of Myrcia (Myrtaceae) from the Brazilian Atlantic Forest. Both belong to Myrcia sect. Aulomyrcia and were previously known only from a few collections made in the state of Rio de Janeiro. Apart from the type specimens and our recent collections, each species has been recollected on only three occasions. Considering the last collections of each species, Myrcia colpodes was rediscovered by our team after a collection gap of 64 years, while M. rubiginosa was found after 16 years. Myrcia colpodes can be recognized by vinaceous, exfoliating bark on the trunk, strongly bullate leaves and relatively long, glabrous panicles. Myrcia rubiginosa is characterized by fissured, greyish-brown bark on the trunk, conspicuous brownish and tomentose indumentum on young leaves and inflorescences, and pendular panicles with relatively small flowers. Data provided here include updated morphological descriptions for the taxa, along with notes on their morphological affinities and geographic distribution. Their fruits are here described and illustrated for the first time.

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Use of the Alternative Stable States Concept in Tropical Terrestrial Ecosystem Research—A Systematic Literature Review

March 2025

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16 Reads

Biotropica

Global changes can impact ecosystem resilience, leading to abrupt and irreversible shifts in structure and function. In the face of increasing anthropogenic disturbances, understanding mechanisms that destabilize ecosystems and push them into alternative stable states is crucial. We conducted a systematic review of the application of concepts from dynamic systems theory—alternative stable states, tipping points, hysteresis, and alternative pathways—in tropical terrestrial ecosystem research. We identified 135 articles (71 observational, 59 theoretical/modeling, four experimental, one meta‐analysis) using these concepts, addressing ecosystem changes due to anthropogenic and natural disturbances. Most articles focused on conservation biology (46%), followed by climate change (31%), successional ecology (28%), ecological restoration (16%), physiology (15%), novel ecosystems (3%), and biological invasion (3%). Fire was the primary disturbance driving shifts into alternative stable states (54%). Disturbance roles varied across biomes. Numerous articles on tropical and subtropical broadleaf forests highlighted biodiversity and ecosystem service losses due to disturbances. Conversely, studies on tropical and subtropical grasslands, savannas, and shrublands emphasized fires and herbivory as key factors in the maintenance of the structure and composition of savannas. The high number of articles on these biomes underscores their importance. The review highlights that considering alternative stable states in the responses of ecosystems to global changes can enhance disturbance mitigation and ecological restoration, potentially averting future biodiversity and ecosystem service losses. Addressing ecosystem responses to global changes from this perspective can enable more effective disturbance mitigation and ecological restoration actions.



FIGURE 1. Representative specimen of Eugenia grandifolia (Fernandes 922, RB). Image reproduced with the consent of RB Herbarium.
FIGURE 2. Morphology of Eugenia grandifolia in fresh state. A. Habit. B. Trunk. C. Detail of leaf base and petioles in the abaxial surface. D. Detail of leaf abaxial surface. E. Flowering branch with ramiflorous inflorescences and flower buds at early stages of development, notice the marcescent bracts (arrowhead). F. Detail of the racemes and flower buds at late stages of development. G. Flowers at anthesis with campanulate corolla. H. Detail of post-anthetic flowers with dry stamens. J. A pair of immature fruits with longitudinal ridges. K.
FIGURE 3. Morphology of the colleters in Eugenia grandifolia. A. Ramiflorous inflorescence with a single pair of flowers, bearing colleters (white arrows) in the axil of a bract scar (Fernandes 883, RB). B. Detail of the group of colleters showing the size inequality in the axil of a bract scar (black arrow) (Fernandes 883, NIT). C. Detail of the colleters (white arrows) located between the bracts and the axis an axillary inflorescence (Fernandes 893, RB). Photos by Thiago Fernandes.
FIGURE 4. Known distribution of Eugenia grandifolia within Rio de Janeiro State, Brazil.
Revisiting the endemic Eugenia grandifolia (Myrtaceae), a rare species from the Brazilian state of Rio de Janeiro: extended description and conservation

January 2025

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201 Reads

Phytotaxa

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João Marcelo Alvarenga Braga

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[...]

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This paper documents the rediscovery of Eugenia grandifolia, an endemic species from the Brazilian state of Rio de Janeiro that was primarily known from 19 th century collections. Eugenia grandifolia is remarkable by its relatively large, subsessile leaves with cordate bases, inflorescences in racemes and often ramiflorous, and fruits with up to seven seeds. We provide herein a second step lectotypification, updated morphological description, notes on taxonomy, distribution, habitat, and phenology of the species. The presence of colleters in the species is first recorded here. Its fruits, previously unknown to science, are illustrated and described herein, and the first photographic documentation of the live plant in its habitat is also presented. Finally, we present a distribution map and a reassessment of the conservation status of E. grandifolia.


Two new species of Marantaceae from Reserva Natural Vale, Espírito Santo state, Brazil

January 2025

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17 Reads

Phytotaxa

We describe two new species of Marantaceae of the Brazilian Atlantic Forest. These species were discovered in northern Espírito Santo state, inside Reserva Natural Vale. Ctenanthe brevibractea is here compared to C. lanceolata, and can be distinguished by its overall shorter stature, glabrous leaf sheath, inflorescence rachis with shorter internodes, component bracts obovate-acuminate, deciduous, holding 1–2 cymules, per cymule with one bracteole, and flowers with solitary, spathulate outer staminodes. Saranthe rufopilosa is most similar to S. leptostachya, but differs by having 2-nodated inflorescences, and indumentum of long stiff reddish trichomes disposed on peduncles, rachis, internodes of inflorescences, cymule peduncles, pedicels, sepals and ovary. Their distribution maps and photographs are also provided.



FIGURE 2. Geographic distribution map of Ernestia rheophytica and putative relatives, and E. goudotii. A. Distribution of E. rheophytica (red star), E. karuruana (pink circles), E. tenella (white circles), and E. goudotii (orange circles). B. Habitat of the E. rheophytica on the banks of the Yarí River, Solano, Caquetá, Colombia. Photo: Saúl E. Hoyos-Gómez (B).
FIGURE 3. Details of the types of Ernestia goudotii and E. ovata. A. Holotype of E. goudotii at P herbarium. B. Lectotype of E. ovata at K herbarium. Sources: ©Muséum National d’Histoire Naturelle and ©Royal Botanic Gardens, Kew, respectively.
FIGURE 4. Ernestia goudotii in the habitat. A. Leaves. B–C. Flowers in front view. Photos: Nicolás Baresch (unvouchered).
Taxonomic and nomenclatural novelties in Marcetieae (Melastomataceae) from Colombia: A new species of Ernestia and the identity of Acisanthera goudotii

December 2024

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139 Reads

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1 Citation

Phytotaxa

During the development of the taxonomic treatment of Ernestia we came across a taxonomic novelty and a species for which taxonomic verification was needed from Colombia. Herein, we propose Ernestia rheophytica a new species belonging to the sensu stricto clade of the genus, and clarify the identity of Acisanthera goudotii, now treated as E. goudotii. We also clarify the status of the original material of E. goudotii and propose the lectotypification of E. ovata and its synonymization under E. goudotii. Ernestia rheophytica, as the name indicates, is a rheophytic species, a rare habit in Melastomataceae, especially in Marcetieae.


Fig. 1. type specimens. A Abbevillea langsdorffii (le00003983); B Britoa sessiliflora (F0064792F). images reproduced with the consent of le and f herbaria.
Fig. 2. Morphology of Campomanesia lorenziana in a dry state. A leaf adaxial surface; B leaf abaxial surface; C flower bud with calyx lobes distinctively folded at the very apex; D immature fruit with multiple longitudinal ridges. (All from Fernandes 1125).
Fig. 3. Campomanesia lorenziana, cultivated individual. A columnar architecture; B leaves; C flower bud with sepals distinctively folded at the very apex; D open flower; E immature fruits with longitudinal ribs; F ripe fruits; G lateral view of a ripe fruit. photos: joão marcelo alvarenga braga.
Fig. 4. Comparison of ripe fruits of A Campomanesia sessiliflora; B C. lorenziana; C C. hirsuta; D C. phaea. (squares = 1 cm 2 ). photos: A harri lorenzi; B -D marco t.c. lacerda.
Morphological features separating Campomanesia lorenziana and allied species.
Campomanesia lorenziana as a replacement name for Abbevillea langsdorffii (Myrtaceae), a rare and endemic fruiting species from the Brazilian Atlantic Forest

November 2024

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115 Reads

Kew Bulletin

This study was initially driven by efforts to identify a species of Campomanesia from the Brazilian Atlantic Forest that was introduced into cultivation because of it excellent fruits, using seeds collected in 2007. Tentatively interpreted as a new taxon, after examination of the types of synonyms of its apparent close relatives, we found that this taxon corresponds closely to the type and original description of Abbevillea langsdorffii, which is currently considered a synonym of Campomanesia sessiliflora var. sessiliflora. Examination of original descriptions, types, historical and modern herbarium collections and cultivated individuals support the recognition of A. langsdorffii as a distinct species. The existence of C. langsdorffii prevents using this combination, and, therefore, we propose Campomanesia lorenziana as a necessary replacement name. We provide herein an updated morphological description for C. lor-enziana, including a report on fruit taste, morphological photographs and drawings and a taxonomic discussion. Campomanesia lorenziana is similar to C. hirsuta and C. phaea, so we provide morphological data to distinguish them and a brief historical overview regarding the cultivation of C. lorenziana is also presented.


Taxonomic notes in Myrcia sect. Gomidesia (Myrtaceae) from Rio de Janeiro, Brazil: reestablishment of M. dolichopetala, and a new species, M. macrobracteosa

November 2024

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194 Reads

This study was conducted in the context of a taxonomic treatment for Myrcia species occurring in the Brazilian state of Rio de Janeiro. While revising current synonyms of endemic species of Myrcia sect. Gomidesia, we found consistent morphological separation between Myrcia gestasiana and Myrcia dolichopetala, presently treated as synonyms and detached here. Individuals co‐occurring with M. dolichopetala are here recognized and described as a new species, Myrcia macrobracteosa, the specific epithet being allusive of its unusually showy, persistent and accrescent bracts and bracteoles. A taxonomic treatment is provided for each species based on herbarium collections and field data, and their diagnostic characters are contrasted in a comparative table. Morphological plates of fresh and dry material are also provided with notes on taxonomy and distribution, including a map of occurrence records. The three taxa occur in urban forest remnants under extreme threat in the Rio de Janeiro Metropolitan Region. In this context, preliminary conservation assessments are also provided for each species based on occurrence data from herbaria and field information.


FIGURE 1. Phyllanthus celatus. A. Habitat, B. Habit, C. Branches showing both leaf surfaces (adaxial and abaxial), D. Pistillate flowers with details, E. Developed fruits. (Photographs by JCR Mendes).
FIGURE 3. Geographic distribution of Phyllanthus celatus.
FIGURE 4. A-C. Phyllanthus niruri. A. Branches with pistillate flowers and fruits, B. Staminate flowers, C. Pistillate flowers. D-H. P. augustinii. D. Habit, E-F. Staminate flower. G. Pistillate flower. H. Fruits. (Fotos: A. Otávio Marques, B-C. Joyce Assunção; D-H. Jone Mendes). Systematic position and morphological relationships:-Considering the morphological similarities Phyllanthus celatus was allocated to the Phyllanthus subgenus Phyllanthus section Phyllanthus subsection Phyllanthus. Currently this subsection consists of ten species, including recently described species: P. augustinii, P. capixaba Marques-Torres & M. J. Silva (2023a: 310), P. itamarajuensis Marques-Torres & M.J. Silva (2020: 174), P. lobatus Marques-Torres & M.J. Silva (2023b), P. longipedicellatus M.J. Silva (2009: 229), P. longipetiolatus Marques-Torres & M.J. Silva (2022b: 288), P. megastylus Marques-Torres & M.J. Silva (2023c: 186), P. niruri, P. perpusillus Baillon (1865: 358), and P. platystigma Marques-Torres & M.J. Silva (2023b). This subsection is characterized by its linear-lanceolate cataphyllary stipules, leaf blades asymmetrical at the base, staminate and pistillate flowers with five sepals, staminate flowers with three free or proximally connate stamens, vertically, obliquely, or horizontally dehiscent anthers, and a cupuliform pistillate disk (Webster 2002, Bouman et al. 2022).
Differential characters of Phyllanthus celatus, P. augustinii and P. niruri.
A new species of Phyllanthus (Phyllanthaceae) hiding in the shades in an urban Atlantic Forest in Rio de Janeiro State, Brazil

July 2024

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244 Reads

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2 Citations

Phytotaxa

A new and critically endangered species of Phyllanthus, endemic to the Parque Nacional da Tijuca in Rio de Janeiro State, Brazil, is described and illustrated here. Phyllanthus celatus is placed in Phyllanthus subgenus Phyllanthus section Phyllanthus subsection Phyllanthus. Morphologically it resembles P. augustinii, P. lobatus and P. niruri, but differs mainly by presenting reddish primary, secondary and intersecondary veins on the abaxial surface (vs absent in both species), and 5-lobed pistillate disc (vs entire only in P. augustinii and P. niruri). Of these, only P. lobatus has a lobed disc, but it differs in pistillate sepals light green (vs whitish or slightly pinkish), deeply 5-lobed pistillate glandular disc (vs 3–5-lobed), styles erect (vs curved), and geographic distribution restricted to the Southeast (vs South). The systematic position of this species and its morphological relationships with allies are discussed and field photographs, illustrations, a distribution map, preliminary conservation status, and taxonomic notes are provided.


Citations (57)


... y Álvarez 1997, Arbeláez y Callejas 1999, Duque et al. 2001, Hoyos-Gómez et al. 2023, Urrego et al. 2024. Besides this amount of field work and interesting results, new taxa still appear in this region and adjacent areas (e.g., Córtes-Ballén 2014, Daly & Melo 2017, Oliveira et al. 2020, Marcano-Berti et al. 2023, Da Silva et al. 2024), including the new species described here. ...

Reference:

A new species of Securidaca (Polygalaceae, Polygaleae) from Araracuara region, middle Caquetá river basin, Colombia Una nueva especie de Securidaca (Polygalaceae, Polygaleae) de la región de Araracuara, cuenca media del Río Caquetá, Colombia
Taxonomic and nomenclatural novelties in Marcetieae (Melastomataceae) from Colombia: A new species of Ernestia and the identity of Acisanthera goudotii
  • Citing Article
  • December 2024

Phytotaxa

... All localities except one (Morro Mundo Novo) are included in strictly protected areas (Parque Nacional da tijuca, Parque Natural Municipal Paisagem Carioca, Monumento Natural dos Morros Pão de Açúcar e da Urca and Parque Natural Municipal de Niterói). However, even these protected areas can suffer a decline in habitat area, extent, and/or quality due to the urban heat island effect (Peres et al. 2018), fire (Matos et al. 2002), pollution (Mello 2001), and soil compaction, introduction of exotic species, and removal of individuals that border the paths, consequences of the intense frequency of visitors to the parks (Mendes et al. 2024). All localities are separated from each other by densely urbanized areas, which is expected to impose a strong barrier to gene flow between them. ...

A new species of Phyllanthus (Phyllanthaceae) hiding in the shades in an urban Atlantic Forest in Rio de Janeiro State, Brazil

Phytotaxa

... Phyllanthus as being composed of 31 species, three of which were not placed in subsections while the others were arranged in subsections Almadenses (one sp.), Phyllanthus (seven spp.), and Clausseniani (20 spp.), with all them being predominantly Brazilian and found in the Atlantic Forest, Cerrado, and Caatinga. Mendes et al. ( , 2024a recently expanded the circumscription of the subsection Clausseniani by including four new species; similarly, Torres and Silva (2022, 2023a, b, c, 2024 Reflecting its relative diversity (40 species), P. sect. Phyllanthus is one of the largest of the genus and constitutes a group with interesting morphological patterns, such as: herbaceous, subshrub, or shrubby plants with or without phyllantoid branching, alternate leaves, and solitary flowers or flowers arranged in cymules (species from the subsections Phyllanthus and Clausseniani), or with opposite leaves and racemose inflorescences (subsect. ...

Phyllanthus novofriburgensis and P. pedrosae, two new species of Phyllanthus subsect. Clausseniani (Phyllanthaceae) from Southeastern Brazil

European Journal of Taxonomy

... This study was prepared in the context of continuous collection effort for Myrtaceae in the Brazilian state of Rio de Janeiro since 2018 (see Fernandes et al. 2020Fernandes et al. , 2022Fernandes et al. , 2023Fernandes et al. , 2024. Eugenia grandifolia was repeatedly visited in field along this period, resulting in a rich collection of fertile material along the entire reproductive cycle of the species. ...

Eugenia guapiassuana (Myrtaceae), a remarkable new tree species from the Brazilian Atlantic Forest

Kew Bulletin

... In Brazil, Melastomataceae stands out as the fifth largest angiosperm family (BFG 2022), comprising 59 genera and 1,483 species, out of which 10 genera are endemic to Brazil (Goldenberg et al. 2024;Michelangeli et al. 2019;Versiane et al. 2021; the number of genera according to Silva et al. 2023). The state of Minas Gerais ranks first in Melastomataceae richness, with 500 species distributed in the Cerrado and in the Atlantic Forest domains (Goldenberg et al. 2024). ...

New records for different lineages of Melastomataceae in the Brazilian Amazon

Acta Amazonica

... Species with invasive potential are often used in urban afforestation projects; however, they become ecologically harmful and can lead to the emergence of new plant individuals along bike paths. These individuals proliferate fast and block the passage, just as observed with Leucaena leucocephala and Talipariti tiliaceum (Narciso et al., 2023). ...

Impact of exotic tree species on the natural regeneration of an urban restinga forest

Trees

... According to Lourençoni et al. (2021), the evolution of soy in the Amazonian part of Mato Grosso has increased over the last few harvests, which conflicts with Brazil's commitment to achieving zero deforestation in the biome. This region has high plant biodiversity (Zappi et al. 2011;Fernandes et al. 2021), including many new taxa published in recent years (Benelli & Lopes 2015Koch et al. 2019;Silva et al. 2020Silva et al. , 2023Fernandes et al. 2023b). ...

Thismia pseudomelanomitra (Thismiaceae), a new mycoheterotrophic species from Brazilian Amazon Forest
  • Citing Article
  • May 2023

Phytotaxa

... Thismia Griffith (1844: 221) (Thismiaceae) comprises approximately 110 species, distributed in the tropical and subtropical regions, mainly concentrated in the Malay Peninsula, Neotropics and Australia (Merckx & Smets 2014;POWO 2023). In Brazil, the genus is represented by 19 species, 13 of which are endemic and occur in the Amazon, Atlantic Forest and Cerrado (Silva et al. 2023a(Silva et al. , 2023b; Flora e Funga do Brasil 2023). ...

Two new species of Thismia (Thismiaceae) from the Brazilian Amazon Forest
  • Citing Article
  • March 2023

Phytotaxa

... The remnants of the Atlantic Forest are in this situation, even those close to urbanized areas, such as Serra da Tiririca. Although it has already been inventoried by Barros (2008), new occurrences and species unknown to science are still recorded (Fernandes et al. 2023). ...

Two new species of Eugenia (Myrtaceae) from the Brazilian Atlantic Forest

Kew Bulletin

... Phyllanthus subsect. Clausseniani G.L.Webster is one of the largest subsections, with 26 species, including five species recently described from Brazil (Torres et al. 2020;Mendes et al. 2021Mendes et al. , 2022. This section is characterized by deeply emarginate anthers, distinct and often stipitate thecae, 4-colporate pollen grains, and mostly non-capitate stigmas (Webster 2002;Mendes 2022). ...

Two New Species of Phyllanthus (Phyllanthaceae) from Southeastern Brazil

Systematic Botany